Job ID = 10608938 sra ファイルのダウンロード中... Completed: 564754K bytes transferred in 52 seconds (88216K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 14076379 spots for /home/okishinya/chipatlas/results/sacCer3/SRX2737497/SRR5448630.sra Written 14076379 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:42 14076379 reads; of these: 14076379 (100.00%) were unpaired; of these: 1955196 (13.89%) aligned 0 times 9616720 (68.32%) aligned exactly 1 time 2504463 (17.79%) aligned >1 times 86.11% overall alignment rate Time searching: 00:03:42 Overall time: 00:03:42 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 4283847 / 12121183 = 0.3534 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Thu, 03 May 2018 22:54:23: # Command line: callpeak -t SRX2737497.bam -f BAM -g 12100000 -n SRX2737497.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2737497.10 # format = BAM # ChIP-seq file = ['SRX2737497.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 03 May 2018 22:54:23: #1 read tag files... INFO @ Thu, 03 May 2018 22:54:23: #1 read treatment tags... INFO @ Thu, 03 May 2018 22:54:23: # Command line: callpeak -t SRX2737497.bam -f BAM -g 12100000 -n SRX2737497.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2737497.20 # format = BAM # ChIP-seq file = ['SRX2737497.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 03 May 2018 22:54:23: #1 read tag files... INFO @ Thu, 03 May 2018 22:54:23: #1 read treatment tags... INFO @ Thu, 03 May 2018 22:54:23: # Command line: callpeak -t SRX2737497.bam -f BAM -g 12100000 -n SRX2737497.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2737497.05 # format = BAM # ChIP-seq file = ['SRX2737497.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 03 May 2018 22:54:23: #1 read tag files... INFO @ Thu, 03 May 2018 22:54:23: #1 read treatment tags... INFO @ Thu, 03 May 2018 22:54:30: 1000000 INFO @ Thu, 03 May 2018 22:54:30: 1000000 INFO @ Thu, 03 May 2018 22:54:30: 1000000 INFO @ Thu, 03 May 2018 22:54:38: 2000000 INFO @ Thu, 03 May 2018 22:54:38: 2000000 INFO @ Thu, 03 May 2018 22:54:38: 2000000 INFO @ Thu, 03 May 2018 22:54:45: 3000000 INFO @ Thu, 03 May 2018 22:54:45: 3000000 INFO @ Thu, 03 May 2018 22:54:45: 3000000 INFO @ Thu, 03 May 2018 22:54:53: 4000000 INFO @ Thu, 03 May 2018 22:54:53: 4000000 INFO @ Thu, 03 May 2018 22:54:53: 4000000 INFO @ Thu, 03 May 2018 22:55:00: 5000000 INFO @ Thu, 03 May 2018 22:55:00: 5000000 INFO @ Thu, 03 May 2018 22:55:00: 5000000 INFO @ Thu, 03 May 2018 22:55:08: 6000000 INFO @ Thu, 03 May 2018 22:55:08: 6000000 INFO @ Thu, 03 May 2018 22:55:08: 6000000 INFO @ Thu, 03 May 2018 22:55:15: 7000000 INFO @ Thu, 03 May 2018 22:55:15: 7000000 INFO @ Thu, 03 May 2018 22:55:15: 7000000 INFO @ Thu, 03 May 2018 22:55:21: #1 tag size is determined as 101 bps INFO @ Thu, 03 May 2018 22:55:21: #1 tag size = 101 INFO @ Thu, 03 May 2018 22:55:21: #1 total tags in treatment: 7837336 INFO @ Thu, 03 May 2018 22:55:21: #1 user defined the maximum tags... INFO @ Thu, 03 May 2018 22:55:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 03 May 2018 22:55:21: #1 tag size is determined as 101 bps INFO @ Thu, 03 May 2018 22:55:21: #1 tag size = 101 INFO @ Thu, 03 May 2018 22:55:21: #1 total tags in treatment: 7837336 INFO @ Thu, 03 May 2018 22:55:21: #1 user defined the maximum tags... INFO @ Thu, 03 May 2018 22:55:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 03 May 2018 22:55:21: #1 tags after filtering in treatment: 7837336 INFO @ Thu, 03 May 2018 22:55:21: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 03 May 2018 22:55:21: #1 finished! INFO @ Thu, 03 May 2018 22:55:21: #2 Build Peak Model... INFO @ Thu, 03 May 2018 22:55:21: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 03 May 2018 22:55:22: #1 tags after filtering in treatment: 7837336 INFO @ Thu, 03 May 2018 22:55:22: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 03 May 2018 22:55:22: #1 finished! INFO @ Thu, 03 May 2018 22:55:22: #2 Build Peak Model... INFO @ Thu, 03 May 2018 22:55:22: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 03 May 2018 22:55:22: #1 tag size is determined as 101 bps INFO @ Thu, 03 May 2018 22:55:22: #1 tag size = 101 INFO @ Thu, 03 May 2018 22:55:22: #1 total tags in treatment: 7837336 INFO @ Thu, 03 May 2018 22:55:22: #1 user defined the maximum tags... INFO @ Thu, 03 May 2018 22:55:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 03 May 2018 22:55:22: #1 tags after filtering in treatment: 7837336 INFO @ Thu, 03 May 2018 22:55:22: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 03 May 2018 22:55:22: #1 finished! INFO @ Thu, 03 May 2018 22:55:22: #2 Build Peak Model... INFO @ Thu, 03 May 2018 22:55:22: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 03 May 2018 22:55:22: #2 number of paired peaks: 0 WARNING @ Thu, 03 May 2018 22:55:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 03 May 2018 22:55:22: Process for pairing-model is terminated! cat: SRX2737497.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2737497.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737497.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737497.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Thu, 03 May 2018 22:55:22: #2 number of paired peaks: 0 WARNING @ Thu, 03 May 2018 22:55:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 03 May 2018 22:55:22: Process for pairing-model is terminated! cat: SRX2737497.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2737497.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737497.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737497.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Thu, 03 May 2018 22:55:22: #2 number of paired peaks: 0 WARNING @ Thu, 03 May 2018 22:55:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 03 May 2018 22:55:22: Process for pairing-model is terminated! cat: SRX2737497.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2737497.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737497.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737497.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。