Job ID = 9160143 sra ファイルのダウンロード中... Completed: 355925K bytes transferred in 20 seconds (142496K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 10838191 spots for /home/okishinya/chipatlas/results/sacCer3/SRX2737257/SRR5448390.sra Written 10838191 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:49 10838191 reads; of these: 10838191 (100.00%) were unpaired; of these: 2804875 (25.88%) aligned 0 times 6250967 (57.68%) aligned exactly 1 time 1782349 (16.45%) aligned >1 times 74.12% overall alignment rate Time searching: 00:01:49 Overall time: 00:01:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 3932618 / 8033316 = 0.4895 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Wed, 28 Jun 2017 02:00:36: # Command line: callpeak -t SRX2737257.bam -f BAM -g 12100000 -n SRX2737257.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2737257.20 # format = BAM # ChIP-seq file = ['SRX2737257.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 02:00:36: #1 read tag files... INFO @ Wed, 28 Jun 2017 02:00:36: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 02:00:36: # Command line: callpeak -t SRX2737257.bam -f BAM -g 12100000 -n SRX2737257.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2737257.10 # format = BAM # ChIP-seq file = ['SRX2737257.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 02:00:36: #1 read tag files... INFO @ Wed, 28 Jun 2017 02:00:36: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 02:00:36: # Command line: callpeak -t SRX2737257.bam -f BAM -g 12100000 -n SRX2737257.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2737257.05 # format = BAM # ChIP-seq file = ['SRX2737257.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 02:00:36: #1 read tag files... INFO @ Wed, 28 Jun 2017 02:00:36: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 02:00:44: 1000000 INFO @ Wed, 28 Jun 2017 02:00:44: 1000000 INFO @ Wed, 28 Jun 2017 02:00:44: 1000000 INFO @ Wed, 28 Jun 2017 02:00:52: 2000000 INFO @ Wed, 28 Jun 2017 02:00:52: 2000000 INFO @ Wed, 28 Jun 2017 02:00:52: 2000000 INFO @ Wed, 28 Jun 2017 02:01:00: 3000000 INFO @ Wed, 28 Jun 2017 02:01:00: 3000000 INFO @ Wed, 28 Jun 2017 02:01:00: 3000000 INFO @ Wed, 28 Jun 2017 02:01:08: 4000000 INFO @ Wed, 28 Jun 2017 02:01:09: 4000000 INFO @ Wed, 28 Jun 2017 02:01:09: 4000000 INFO @ Wed, 28 Jun 2017 02:01:09: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 02:01:09: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 02:01:09: #1 total tags in treatment: 4100698 INFO @ Wed, 28 Jun 2017 02:01:09: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 02:01:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 02:01:09: #1 tags after filtering in treatment: 4100698 INFO @ Wed, 28 Jun 2017 02:01:09: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 02:01:09: #1 finished! INFO @ Wed, 28 Jun 2017 02:01:09: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 02:01:09: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 02:01:09: #2 number of paired peaks: 31 WARNING @ Wed, 28 Jun 2017 02:01:09: Too few paired peaks (31) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 02:01:09: Process for pairing-model is terminated! cat: SRX2737257.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2737257.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737257.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737257.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 02:01:09: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 02:01:09: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 02:01:09: #1 total tags in treatment: 4100698 INFO @ Wed, 28 Jun 2017 02:01:09: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 02:01:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 02:01:09: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 02:01:09: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 02:01:09: #1 total tags in treatment: 4100698 INFO @ Wed, 28 Jun 2017 02:01:09: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 02:01:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 02:01:09: #1 tags after filtering in treatment: 4100698 INFO @ Wed, 28 Jun 2017 02:01:09: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 02:01:09: #1 finished! INFO @ Wed, 28 Jun 2017 02:01:09: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 02:01:09: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 02:01:09: #1 tags after filtering in treatment: 4100698 INFO @ Wed, 28 Jun 2017 02:01:09: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 02:01:09: #1 finished! INFO @ Wed, 28 Jun 2017 02:01:09: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 02:01:09: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 02:01:09: #2 number of paired peaks: 31 WARNING @ Wed, 28 Jun 2017 02:01:09: Too few paired peaks (31) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 02:01:09: Process for pairing-model is terminated! cat: SRX2737257.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません INFO @ Wed, 28 Jun 2017 02:01:09: #2 number of paired peaks: 31 WARNING @ Wed, 28 Jun 2017 02:01:09: Too few paired peaks (31) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 02:01:09: Process for pairing-model is terminated! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2737257.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737257.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737257.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling cat: SRX2737257.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2737257.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737257.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2737257.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。