Job ID = 2010050 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 12,216,148 reads read : 12,216,148 reads written : 12,216,148 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:18 12216148 reads; of these: 12216148 (100.00%) were unpaired; of these: 646307 (5.29%) aligned 0 times 9402363 (76.97%) aligned exactly 1 time 2167478 (17.74%) aligned >1 times 94.71% overall alignment rate Time searching: 00:02:18 Overall time: 00:02:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 4876688 / 11569841 = 0.4215 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 21:12:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:12:13: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:12:13: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:12:14: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:12:14: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:12:14: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:12:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:12:15: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:12:15: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:12:21: 1000000 INFO @ Fri, 05 Jul 2019 21:12:23: 1000000 INFO @ Fri, 05 Jul 2019 21:12:24: 1000000 INFO @ Fri, 05 Jul 2019 21:12:29: 2000000 INFO @ Fri, 05 Jul 2019 21:12:31: 2000000 INFO @ Fri, 05 Jul 2019 21:12:32: 2000000 INFO @ Fri, 05 Jul 2019 21:12:36: 3000000 INFO @ Fri, 05 Jul 2019 21:12:39: 3000000 INFO @ Fri, 05 Jul 2019 21:12:41: 3000000 INFO @ Fri, 05 Jul 2019 21:12:44: 4000000 INFO @ Fri, 05 Jul 2019 21:12:47: 4000000 INFO @ Fri, 05 Jul 2019 21:12:49: 4000000 INFO @ Fri, 05 Jul 2019 21:12:51: 5000000 INFO @ Fri, 05 Jul 2019 21:12:55: 5000000 INFO @ Fri, 05 Jul 2019 21:12:57: 5000000 INFO @ Fri, 05 Jul 2019 21:12:59: 6000000 INFO @ Fri, 05 Jul 2019 21:13:03: 6000000 INFO @ Fri, 05 Jul 2019 21:13:04: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:13:04: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:13:04: #1 total tags in treatment: 6693153 INFO @ Fri, 05 Jul 2019 21:13:04: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:13:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:13:04: #1 tags after filtering in treatment: 6693153 INFO @ Fri, 05 Jul 2019 21:13:04: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:13:04: #1 finished! INFO @ Fri, 05 Jul 2019 21:13:04: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:13:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:13:04: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:13:04: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:13:04: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:13:05: 6000000 INFO @ Fri, 05 Jul 2019 21:13:08: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:13:08: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:13:08: #1 total tags in treatment: 6693153 INFO @ Fri, 05 Jul 2019 21:13:08: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:13:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:13:08: #1 tags after filtering in treatment: 6693153 INFO @ Fri, 05 Jul 2019 21:13:08: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:13:08: #1 finished! INFO @ Fri, 05 Jul 2019 21:13:08: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:13:08: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:13:09: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:13:09: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:13:09: Process for pairing-model is terminated! INFO @ Fri, 05 Jul 2019 21:13:10: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:13:10: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:13:10: #1 total tags in treatment: 6693153 INFO @ Fri, 05 Jul 2019 21:13:10: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:13:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:13:10: #1 tags after filtering in treatment: 6693153 INFO @ Fri, 05 Jul 2019 21:13:10: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:13:10: #1 finished! INFO @ Fri, 05 Jul 2019 21:13:10: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:13:10: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:13:11: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:13:11: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:13:11: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.10_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.20_model.r’rm: : No such file or directorycannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.10_*.xls’ : No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.10_peaks.narrowPeak’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609714/SRX2609714.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。