Job ID = 2010036 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 13,940,588 reads read : 13,940,588 reads written : 13,940,588 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:20 13940588 reads; of these: 13940588 (100.00%) were unpaired; of these: 930522 (6.67%) aligned 0 times 10469082 (75.10%) aligned exactly 1 time 2540984 (18.23%) aligned >1 times 93.33% overall alignment rate Time searching: 00:02:20 Overall time: 00:02:20 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 5955721 / 13010066 = 0.4578 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 21:13:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:13:43: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:13:43: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:13:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:13:44: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:13:44: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:13:44: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:13:44: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:13:44: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:13:53: 1000000 INFO @ Fri, 05 Jul 2019 21:13:54: 1000000 INFO @ Fri, 05 Jul 2019 21:13:54: 1000000 INFO @ Fri, 05 Jul 2019 21:14:02: 2000000 INFO @ Fri, 05 Jul 2019 21:14:03: 2000000 INFO @ Fri, 05 Jul 2019 21:14:05: 2000000 INFO @ Fri, 05 Jul 2019 21:14:11: 3000000 INFO @ Fri, 05 Jul 2019 21:14:12: 3000000 INFO @ Fri, 05 Jul 2019 21:14:15: 3000000 INFO @ Fri, 05 Jul 2019 21:14:20: 4000000 INFO @ Fri, 05 Jul 2019 21:14:21: 4000000 INFO @ Fri, 05 Jul 2019 21:14:26: 4000000 INFO @ Fri, 05 Jul 2019 21:14:29: 5000000 INFO @ Fri, 05 Jul 2019 21:14:31: 5000000 INFO @ Fri, 05 Jul 2019 21:14:36: 5000000 INFO @ Fri, 05 Jul 2019 21:14:37: 6000000 INFO @ Fri, 05 Jul 2019 21:14:40: 6000000 INFO @ Fri, 05 Jul 2019 21:14:46: 7000000 INFO @ Fri, 05 Jul 2019 21:14:47: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:14:47: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:14:47: #1 total tags in treatment: 7054345 INFO @ Fri, 05 Jul 2019 21:14:47: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:14:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:14:47: 6000000 INFO @ Fri, 05 Jul 2019 21:14:47: #1 tags after filtering in treatment: 7054345 INFO @ Fri, 05 Jul 2019 21:14:47: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:14:47: #1 finished! INFO @ Fri, 05 Jul 2019 21:14:47: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:14:47: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:14:47: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:14:47: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:14:47: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:14:48: 7000000 INFO @ Fri, 05 Jul 2019 21:14:49: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:14:49: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:14:49: #1 total tags in treatment: 7054345 INFO @ Fri, 05 Jul 2019 21:14:49: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:14:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:14:49: #1 tags after filtering in treatment: 7054345 INFO @ Fri, 05 Jul 2019 21:14:49: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:14:49: #1 finished! INFO @ Fri, 05 Jul 2019 21:14:49: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:14:49: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:14:50: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:14:50: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:14:50: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:14:57: 7000000 INFO @ Fri, 05 Jul 2019 21:14:57: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:14:57: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:14:57: #1 total tags in treatment: 7054345 INFO @ Fri, 05 Jul 2019 21:14:57: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:14:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:14:57: #1 tags after filtering in treatment: 7054345 INFO @ Fri, 05 Jul 2019 21:14:57: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:14:57: #1 finished! INFO @ Fri, 05 Jul 2019 21:14:57: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:14:57: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:14:58: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:14:58: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:14:58: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2609701/SRX2609701.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。