Job ID = 9384006 sra ファイルのダウンロード中... Completed: 325094K bytes transferred in 65 seconds (40623K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 10260863 spots for /home/okishinya/chipatlas/results/sacCer3/SRX2174496/SRR4254724.sra Written 10260863 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:07 10260863 reads; of these: 10260863 (100.00%) were unpaired; of these: 834699 (8.13%) aligned 0 times 8483413 (82.68%) aligned exactly 1 time 942751 (9.19%) aligned >1 times 91.87% overall alignment rate Time searching: 00:02:07 Overall time: 00:02:07 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 4571846 / 9426164 = 0.4850 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 05 Aug 2017 23:33:44: # Command line: callpeak -t SRX2174496.bam -f BAM -g 12100000 -n SRX2174496.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2174496.10 # format = BAM # ChIP-seq file = ['SRX2174496.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 05 Aug 2017 23:33:44: #1 read tag files... INFO @ Sat, 05 Aug 2017 23:33:44: #1 read treatment tags... INFO @ Sat, 05 Aug 2017 23:33:44: # Command line: callpeak -t SRX2174496.bam -f BAM -g 12100000 -n SRX2174496.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2174496.20 # format = BAM # ChIP-seq file = ['SRX2174496.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 05 Aug 2017 23:33:44: #1 read tag files... INFO @ Sat, 05 Aug 2017 23:33:44: # Command line: callpeak -t SRX2174496.bam -f BAM -g 12100000 -n SRX2174496.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2174496.05 # format = BAM # ChIP-seq file = ['SRX2174496.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 05 Aug 2017 23:33:44: #1 read treatment tags... INFO @ Sat, 05 Aug 2017 23:33:44: #1 read tag files... INFO @ Sat, 05 Aug 2017 23:33:44: #1 read treatment tags... INFO @ Sat, 05 Aug 2017 23:33:51: 1000000 INFO @ Sat, 05 Aug 2017 23:33:53: 1000000 INFO @ Sat, 05 Aug 2017 23:33:53: 1000000 INFO @ Sat, 05 Aug 2017 23:33:58: 2000000 INFO @ Sat, 05 Aug 2017 23:34:00: 2000000 INFO @ Sat, 05 Aug 2017 23:34:01: 2000000 INFO @ Sat, 05 Aug 2017 23:34:05: 3000000 INFO @ Sat, 05 Aug 2017 23:34:08: 3000000 INFO @ Sat, 05 Aug 2017 23:34:08: 3000000 INFO @ Sat, 05 Aug 2017 23:34:13: 4000000 INFO @ Sat, 05 Aug 2017 23:34:16: 4000000 INFO @ Sat, 05 Aug 2017 23:34:16: 4000000 INFO @ Sat, 05 Aug 2017 23:34:19: #1 tag size is determined as 51 bps INFO @ Sat, 05 Aug 2017 23:34:19: #1 tag size = 51 INFO @ Sat, 05 Aug 2017 23:34:19: #1 total tags in treatment: 4854318 INFO @ Sat, 05 Aug 2017 23:34:19: #1 user defined the maximum tags... INFO @ Sat, 05 Aug 2017 23:34:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 05 Aug 2017 23:34:19: #1 tags after filtering in treatment: 4854318 INFO @ Sat, 05 Aug 2017 23:34:19: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 05 Aug 2017 23:34:19: #1 finished! INFO @ Sat, 05 Aug 2017 23:34:19: #2 Build Peak Model... INFO @ Sat, 05 Aug 2017 23:34:19: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 05 Aug 2017 23:34:19: #2 number of paired peaks: 0 WARNING @ Sat, 05 Aug 2017 23:34:19: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 05 Aug 2017 23:34:19: Process for pairing-model is terminated! cat: SRX2174496.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2174496.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174496.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174496.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 05 Aug 2017 23:34:22: #1 tag size is determined as 51 bps INFO @ Sat, 05 Aug 2017 23:34:22: #1 tag size = 51 INFO @ Sat, 05 Aug 2017 23:34:22: #1 total tags in treatment: 4854318 INFO @ Sat, 05 Aug 2017 23:34:22: #1 user defined the maximum tags... INFO @ Sat, 05 Aug 2017 23:34:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 05 Aug 2017 23:34:23: #1 tag size is determined as 51 bps INFO @ Sat, 05 Aug 2017 23:34:23: #1 tag size = 51 INFO @ Sat, 05 Aug 2017 23:34:23: #1 total tags in treatment: 4854318 INFO @ Sat, 05 Aug 2017 23:34:23: #1 user defined the maximum tags... INFO @ Sat, 05 Aug 2017 23:34:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 05 Aug 2017 23:34:23: #1 tags after filtering in treatment: 4854318 INFO @ Sat, 05 Aug 2017 23:34:23: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 05 Aug 2017 23:34:23: #1 finished! INFO @ Sat, 05 Aug 2017 23:34:23: #2 Build Peak Model... INFO @ Sat, 05 Aug 2017 23:34:23: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 05 Aug 2017 23:34:23: #1 tags after filtering in treatment: 4854318 INFO @ Sat, 05 Aug 2017 23:34:23: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 05 Aug 2017 23:34:23: #1 finished! INFO @ Sat, 05 Aug 2017 23:34:23: #2 Build Peak Model... INFO @ Sat, 05 Aug 2017 23:34:23: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 05 Aug 2017 23:34:23: #2 number of paired peaks: 0 WARNING @ Sat, 05 Aug 2017 23:34:23: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 05 Aug 2017 23:34:23: Process for pairing-model is terminated! cat: SRX2174496.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2174496.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174496.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174496.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 05 Aug 2017 23:34:23: #2 number of paired peaks: 0 WARNING @ Sat, 05 Aug 2017 23:34:23: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 05 Aug 2017 23:34:23: Process for pairing-model is terminated! cat: SRX2174496.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2174496.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174496.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174496.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。