Job ID = 9384000 sra ファイルのダウンロード中... Completed: 745165K bytes transferred in 107 seconds (56905K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 34354201 spots for /home/okishinya/chipatlas/results/sacCer3/SRX2174490/SRR4254718.sra Written 34354201 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:06:35 34354201 reads; of these: 34354201 (100.00%) were unpaired; of these: 2441522 (7.11%) aligned 0 times 27438293 (79.87%) aligned exactly 1 time 4474386 (13.02%) aligned >1 times 92.89% overall alignment rate Time searching: 00:06:35 Overall time: 00:06:35 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 16 files... [bam_rmdupse_core] 16789783 / 31912679 = 0.5261 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 05 Aug 2017 23:45:19: # Command line: callpeak -t SRX2174490.bam -f BAM -g 12100000 -n SRX2174490.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2174490.10 # format = BAM # ChIP-seq file = ['SRX2174490.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 05 Aug 2017 23:45:19: #1 read tag files... INFO @ Sat, 05 Aug 2017 23:45:19: #1 read treatment tags... INFO @ Sat, 05 Aug 2017 23:45:19: # Command line: callpeak -t SRX2174490.bam -f BAM -g 12100000 -n SRX2174490.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2174490.05 # format = BAM # ChIP-seq file = ['SRX2174490.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 05 Aug 2017 23:45:19: #1 read tag files... INFO @ Sat, 05 Aug 2017 23:45:19: #1 read treatment tags... INFO @ Sat, 05 Aug 2017 23:45:19: # Command line: callpeak -t SRX2174490.bam -f BAM -g 12100000 -n SRX2174490.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2174490.20 # format = BAM # ChIP-seq file = ['SRX2174490.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 05 Aug 2017 23:45:19: #1 read tag files... INFO @ Sat, 05 Aug 2017 23:45:19: #1 read treatment tags... INFO @ Sat, 05 Aug 2017 23:45:27: 1000000 INFO @ Sat, 05 Aug 2017 23:45:27: 1000000 INFO @ Sat, 05 Aug 2017 23:45:27: 1000000 INFO @ Sat, 05 Aug 2017 23:45:34: 2000000 INFO @ Sat, 05 Aug 2017 23:45:35: 2000000 INFO @ Sat, 05 Aug 2017 23:45:35: 2000000 INFO @ Sat, 05 Aug 2017 23:45:42: 3000000 INFO @ Sat, 05 Aug 2017 23:45:44: 3000000 INFO @ Sat, 05 Aug 2017 23:45:44: 3000000 INFO @ Sat, 05 Aug 2017 23:45:50: 4000000 INFO @ Sat, 05 Aug 2017 23:45:52: 4000000 INFO @ Sat, 05 Aug 2017 23:45:53: 4000000 INFO @ Sat, 05 Aug 2017 23:45:58: 5000000 INFO @ Sat, 05 Aug 2017 23:46:01: 5000000 INFO @ Sat, 05 Aug 2017 23:46:02: 5000000 INFO @ Sat, 05 Aug 2017 23:46:05: 6000000 INFO @ Sat, 05 Aug 2017 23:46:10: 6000000 INFO @ Sat, 05 Aug 2017 23:46:11: 6000000 INFO @ Sat, 05 Aug 2017 23:46:13: 7000000 INFO @ Sat, 05 Aug 2017 23:46:19: 7000000 INFO @ Sat, 05 Aug 2017 23:46:19: 7000000 INFO @ Sat, 05 Aug 2017 23:46:21: 8000000 INFO @ Sat, 05 Aug 2017 23:46:27: 8000000 INFO @ Sat, 05 Aug 2017 23:46:28: 8000000 INFO @ Sat, 05 Aug 2017 23:46:28: 9000000 INFO @ Sat, 05 Aug 2017 23:46:36: 9000000 INFO @ Sat, 05 Aug 2017 23:46:36: 10000000 INFO @ Sat, 05 Aug 2017 23:46:37: 9000000 INFO @ Sat, 05 Aug 2017 23:46:44: 11000000 INFO @ Sat, 05 Aug 2017 23:46:44: 10000000 INFO @ Sat, 05 Aug 2017 23:46:46: 10000000 INFO @ Sat, 05 Aug 2017 23:46:51: 12000000 INFO @ Sat, 05 Aug 2017 23:46:53: 11000000 INFO @ Sat, 05 Aug 2017 23:46:55: 11000000 INFO @ Sat, 05 Aug 2017 23:46:59: 13000000 INFO @ Sat, 05 Aug 2017 23:47:01: 12000000 INFO @ Sat, 05 Aug 2017 23:47:04: 12000000 INFO @ Sat, 05 Aug 2017 23:47:07: 14000000 INFO @ Sat, 05 Aug 2017 23:47:10: 13000000 INFO @ Sat, 05 Aug 2017 23:47:12: 13000000 INFO @ Sat, 05 Aug 2017 23:47:15: 15000000 INFO @ Sat, 05 Aug 2017 23:47:16: #1 tag size is determined as 51 bps INFO @ Sat, 05 Aug 2017 23:47:16: #1 tag size = 51 INFO @ Sat, 05 Aug 2017 23:47:16: #1 total tags in treatment: 15122896 INFO @ Sat, 05 Aug 2017 23:47:16: #1 user defined the maximum tags... INFO @ Sat, 05 Aug 2017 23:47:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 05 Aug 2017 23:47:17: #1 tags after filtering in treatment: 15122896 INFO @ Sat, 05 Aug 2017 23:47:17: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 05 Aug 2017 23:47:17: #1 finished! INFO @ Sat, 05 Aug 2017 23:47:17: #2 Build Peak Model... INFO @ Sat, 05 Aug 2017 23:47:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 05 Aug 2017 23:47:18: #2 number of paired peaks: 0 WARNING @ Sat, 05 Aug 2017 23:47:18: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 05 Aug 2017 23:47:18: Process for pairing-model is terminated! cat: SRX2174490.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2174490.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174490.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174490.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 05 Aug 2017 23:47:18: 14000000 INFO @ Sat, 05 Aug 2017 23:47:21: 14000000 INFO @ Sat, 05 Aug 2017 23:47:26: 15000000 INFO @ Sat, 05 Aug 2017 23:47:27: #1 tag size is determined as 51 bps INFO @ Sat, 05 Aug 2017 23:47:27: #1 tag size = 51 INFO @ Sat, 05 Aug 2017 23:47:27: #1 total tags in treatment: 15122896 INFO @ Sat, 05 Aug 2017 23:47:27: #1 user defined the maximum tags... INFO @ Sat, 05 Aug 2017 23:47:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 05 Aug 2017 23:47:27: #1 tags after filtering in treatment: 15122896 INFO @ Sat, 05 Aug 2017 23:47:27: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 05 Aug 2017 23:47:27: #1 finished! INFO @ Sat, 05 Aug 2017 23:47:27: #2 Build Peak Model... INFO @ Sat, 05 Aug 2017 23:47:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 05 Aug 2017 23:47:28: #2 number of paired peaks: 0 WARNING @ Sat, 05 Aug 2017 23:47:28: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 05 Aug 2017 23:47:28: Process for pairing-model is terminated! cat: SRX2174490.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2174490.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174490.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174490.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 05 Aug 2017 23:47:30: 15000000 INFO @ Sat, 05 Aug 2017 23:47:31: #1 tag size is determined as 51 bps INFO @ Sat, 05 Aug 2017 23:47:31: #1 tag size = 51 INFO @ Sat, 05 Aug 2017 23:47:31: #1 total tags in treatment: 15122896 INFO @ Sat, 05 Aug 2017 23:47:31: #1 user defined the maximum tags... INFO @ Sat, 05 Aug 2017 23:47:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 05 Aug 2017 23:47:31: #1 tags after filtering in treatment: 15122896 INFO @ Sat, 05 Aug 2017 23:47:31: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 05 Aug 2017 23:47:31: #1 finished! INFO @ Sat, 05 Aug 2017 23:47:31: #2 Build Peak Model... INFO @ Sat, 05 Aug 2017 23:47:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 05 Aug 2017 23:47:32: #2 number of paired peaks: 0 WARNING @ Sat, 05 Aug 2017 23:47:32: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 05 Aug 2017 23:47:32: Process for pairing-model is terminated! cat: SRX2174490.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2174490.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174490.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2174490.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。