Job ID = 9162154 sra ファイルのダウンロード中... Completed: 286779K bytes transferred in 5 seconds (407547K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 15806035 spots for /home/okishinya/chipatlas/results/sacCer3/SRX170676/SRR526916.sra Written 15806035 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:26 15806035 reads; of these: 15806035 (100.00%) were unpaired; of these: 632582 (4.00%) aligned 0 times 10466750 (66.22%) aligned exactly 1 time 4706703 (29.78%) aligned >1 times 96.00% overall alignment rate Time searching: 00:03:26 Overall time: 00:03:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 7541857 / 15173453 = 0.4970 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Wed, 28 Jun 2017 06:36:29: # Command line: callpeak -t SRX170676.bam -f BAM -g 12100000 -n SRX170676.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX170676.05 # format = BAM # ChIP-seq file = ['SRX170676.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 06:36:29: #1 read tag files... INFO @ Wed, 28 Jun 2017 06:36:29: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 06:36:29: # Command line: callpeak -t SRX170676.bam -f BAM -g 12100000 -n SRX170676.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX170676.20 # format = BAM # ChIP-seq file = ['SRX170676.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 06:36:29: #1 read tag files... INFO @ Wed, 28 Jun 2017 06:36:29: # Command line: callpeak -t SRX170676.bam -f BAM -g 12100000 -n SRX170676.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX170676.10 # format = BAM # ChIP-seq file = ['SRX170676.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 06:36:29: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 06:36:29: #1 read tag files... INFO @ Wed, 28 Jun 2017 06:36:29: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 06:36:34: 1000000 INFO @ Wed, 28 Jun 2017 06:36:34: 1000000 INFO @ Wed, 28 Jun 2017 06:36:34: 1000000 INFO @ Wed, 28 Jun 2017 06:36:40: 2000000 INFO @ Wed, 28 Jun 2017 06:36:40: 2000000 INFO @ Wed, 28 Jun 2017 06:36:40: 2000000 INFO @ Wed, 28 Jun 2017 06:36:45: 3000000 INFO @ Wed, 28 Jun 2017 06:36:46: 3000000 INFO @ Wed, 28 Jun 2017 06:36:46: 3000000 INFO @ Wed, 28 Jun 2017 06:36:51: 4000000 INFO @ Wed, 28 Jun 2017 06:36:52: 4000000 INFO @ Wed, 28 Jun 2017 06:36:52: 4000000 INFO @ Wed, 28 Jun 2017 06:36:56: 5000000 INFO @ Wed, 28 Jun 2017 06:36:58: 5000000 INFO @ Wed, 28 Jun 2017 06:36:58: 5000000 INFO @ Wed, 28 Jun 2017 06:37:02: 6000000 INFO @ Wed, 28 Jun 2017 06:37:03: 6000000 INFO @ Wed, 28 Jun 2017 06:37:04: 6000000 INFO @ Wed, 28 Jun 2017 06:37:08: 7000000 INFO @ Wed, 28 Jun 2017 06:37:09: 7000000 INFO @ Wed, 28 Jun 2017 06:37:10: 7000000 INFO @ Wed, 28 Jun 2017 06:37:11: #1 tag size is determined as 36 bps INFO @ Wed, 28 Jun 2017 06:37:11: #1 tag size = 36 INFO @ Wed, 28 Jun 2017 06:37:11: #1 total tags in treatment: 7631596 INFO @ Wed, 28 Jun 2017 06:37:11: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 06:37:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 06:37:11: #1 tags after filtering in treatment: 7631596 INFO @ Wed, 28 Jun 2017 06:37:11: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 06:37:11: #1 finished! INFO @ Wed, 28 Jun 2017 06:37:11: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 06:37:11: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 06:37:12: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 06:37:12: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 06:37:12: Process for pairing-model is terminated! cat: SRX170676.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX170676.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX170676.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX170676.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 06:37:13: #1 tag size is determined as 36 bps INFO @ Wed, 28 Jun 2017 06:37:13: #1 tag size = 36 INFO @ Wed, 28 Jun 2017 06:37:13: #1 total tags in treatment: 7631596 INFO @ Wed, 28 Jun 2017 06:37:13: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 06:37:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 06:37:13: #1 tags after filtering in treatment: 7631596 INFO @ Wed, 28 Jun 2017 06:37:13: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 06:37:13: #1 finished! INFO @ Wed, 28 Jun 2017 06:37:13: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 06:37:13: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 06:37:14: #1 tag size is determined as 36 bps INFO @ Wed, 28 Jun 2017 06:37:14: #1 tag size = 36 INFO @ Wed, 28 Jun 2017 06:37:14: #1 total tags in treatment: 7631596 INFO @ Wed, 28 Jun 2017 06:37:14: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 06:37:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 06:37:14: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 06:37:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 06:37:14: Process for pairing-model is terminated! cat: SRX170676.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX170676.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX170676.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX170676.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 06:37:14: #1 tags after filtering in treatment: 7631596 INFO @ Wed, 28 Jun 2017 06:37:14: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 06:37:14: #1 finished! INFO @ Wed, 28 Jun 2017 06:37:14: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 06:37:14: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 06:37:14: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 06:37:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 06:37:14: Process for pairing-model is terminated! cat: SRX170676.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX170676.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX170676.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX170676.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。