Job ID = 9161880 sra ファイルのダウンロード中... Completed: 636255K bytes transferred in 7 seconds (714480K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 31803548 spots for /home/okishinya/chipatlas/results/sacCer3/SRX1241192/SRR2394707.sra Written 31803548 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:06:32 31803548 reads; of these: 31803548 (100.00%) were unpaired; of these: 1013950 (3.19%) aligned 0 times 26207121 (82.40%) aligned exactly 1 time 4582477 (14.41%) aligned >1 times 96.81% overall alignment rate Time searching: 00:06:32 Overall time: 00:06:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 16 files... [bam_rmdupse_core] 14674956 / 30789598 = 0.4766 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Wed, 28 Jun 2017 05:04:50: # Command line: callpeak -t SRX1241192.bam -f BAM -g 12100000 -n SRX1241192.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1241192.10 # format = BAM # ChIP-seq file = ['SRX1241192.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 05:04:50: #1 read tag files... INFO @ Wed, 28 Jun 2017 05:04:50: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 05:04:50: # Command line: callpeak -t SRX1241192.bam -f BAM -g 12100000 -n SRX1241192.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1241192.20 # format = BAM # ChIP-seq file = ['SRX1241192.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 05:04:50: #1 read tag files... INFO @ Wed, 28 Jun 2017 05:04:50: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 05:04:50: # Command line: callpeak -t SRX1241192.bam -f BAM -g 12100000 -n SRX1241192.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1241192.05 # format = BAM # ChIP-seq file = ['SRX1241192.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 05:04:50: #1 read tag files... INFO @ Wed, 28 Jun 2017 05:04:50: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 05:04:56: 1000000 INFO @ Wed, 28 Jun 2017 05:04:56: 1000000 INFO @ Wed, 28 Jun 2017 05:04:56: 1000000 INFO @ Wed, 28 Jun 2017 05:05:02: 2000000 INFO @ Wed, 28 Jun 2017 05:05:02: 2000000 INFO @ Wed, 28 Jun 2017 05:05:03: 2000000 INFO @ Wed, 28 Jun 2017 05:05:09: 3000000 INFO @ Wed, 28 Jun 2017 05:05:09: 3000000 INFO @ Wed, 28 Jun 2017 05:05:09: 3000000 INFO @ Wed, 28 Jun 2017 05:05:15: 4000000 INFO @ Wed, 28 Jun 2017 05:05:15: 4000000 INFO @ Wed, 28 Jun 2017 05:05:16: 4000000 INFO @ Wed, 28 Jun 2017 05:05:21: 5000000 INFO @ Wed, 28 Jun 2017 05:05:22: 5000000 INFO @ Wed, 28 Jun 2017 05:05:23: 5000000 INFO @ Wed, 28 Jun 2017 05:05:29: 6000000 INFO @ Wed, 28 Jun 2017 05:05:29: 6000000 INFO @ Wed, 28 Jun 2017 05:05:30: 6000000 INFO @ Wed, 28 Jun 2017 05:05:36: 7000000 INFO @ Wed, 28 Jun 2017 05:05:37: 7000000 INFO @ Wed, 28 Jun 2017 05:05:38: 7000000 INFO @ Wed, 28 Jun 2017 05:05:43: 8000000 INFO @ Wed, 28 Jun 2017 05:05:45: 8000000 INFO @ Wed, 28 Jun 2017 05:05:45: 8000000 INFO @ Wed, 28 Jun 2017 05:05:50: 9000000 INFO @ Wed, 28 Jun 2017 05:05:52: 9000000 INFO @ Wed, 28 Jun 2017 05:05:54: 9000000 INFO @ Wed, 28 Jun 2017 05:05:57: 10000000 INFO @ Wed, 28 Jun 2017 05:06:00: 10000000 INFO @ Wed, 28 Jun 2017 05:06:02: 10000000 INFO @ Wed, 28 Jun 2017 05:06:04: 11000000 INFO @ Wed, 28 Jun 2017 05:06:07: 11000000 INFO @ Wed, 28 Jun 2017 05:06:10: 11000000 INFO @ Wed, 28 Jun 2017 05:06:11: 12000000 INFO @ Wed, 28 Jun 2017 05:06:14: 12000000 INFO @ Wed, 28 Jun 2017 05:06:18: 13000000 INFO @ Wed, 28 Jun 2017 05:06:18: 12000000 INFO @ Wed, 28 Jun 2017 05:06:22: 13000000 INFO @ Wed, 28 Jun 2017 05:06:25: 14000000 INFO @ Wed, 28 Jun 2017 05:06:27: 13000000 INFO @ Wed, 28 Jun 2017 05:06:29: 14000000 INFO @ Wed, 28 Jun 2017 05:06:32: 15000000 INFO @ Wed, 28 Jun 2017 05:06:33: 14000000 INFO @ Wed, 28 Jun 2017 05:06:36: 15000000 INFO @ Wed, 28 Jun 2017 05:06:39: 15000000 INFO @ Wed, 28 Jun 2017 05:06:39: 16000000 INFO @ Wed, 28 Jun 2017 05:06:40: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 05:06:40: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 05:06:40: #1 total tags in treatment: 16114642 INFO @ Wed, 28 Jun 2017 05:06:40: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 05:06:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 05:06:40: #1 tags after filtering in treatment: 16114642 INFO @ Wed, 28 Jun 2017 05:06:40: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 05:06:40: #1 finished! INFO @ Wed, 28 Jun 2017 05:06:40: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 05:06:40: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 05:06:41: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 05:06:41: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 05:06:41: Process for pairing-model is terminated! cat: SRX1241192.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1241192.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1241192.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1241192.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 05:06:43: 16000000 INFO @ Wed, 28 Jun 2017 05:06:44: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 05:06:44: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 05:06:44: #1 total tags in treatment: 16114642 INFO @ Wed, 28 Jun 2017 05:06:44: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 05:06:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 05:06:44: #1 tags after filtering in treatment: 16114642 INFO @ Wed, 28 Jun 2017 05:06:44: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 05:06:44: #1 finished! INFO @ Wed, 28 Jun 2017 05:06:44: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 05:06:44: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 05:06:45: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 05:06:45: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 05:06:45: Process for pairing-model is terminated! cat: SRX1241192.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1241192.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1241192.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1241192.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 05:06:45: 16000000 INFO @ Wed, 28 Jun 2017 05:06:46: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 05:06:46: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 05:06:46: #1 total tags in treatment: 16114642 INFO @ Wed, 28 Jun 2017 05:06:46: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 05:06:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 05:06:46: #1 tags after filtering in treatment: 16114642 INFO @ Wed, 28 Jun 2017 05:06:46: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 05:06:46: #1 finished! INFO @ Wed, 28 Jun 2017 05:06:46: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 05:06:46: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 05:06:47: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 05:06:47: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 05:06:47: Process for pairing-model is terminated! cat: SRX1241192.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1241192.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1241192.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1241192.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。