Job ID = 2009717 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 19,120,673 reads read : 19,120,673 reads written : 19,120,673 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:06:03 19120673 reads; of these: 19120673 (100.00%) were unpaired; of these: 4550189 (23.80%) aligned 0 times 12038132 (62.96%) aligned exactly 1 time 2532352 (13.24%) aligned >1 times 76.20% overall alignment rate Time searching: 00:06:03 Overall time: 00:06:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 6016032 / 14570484 = 0.4129 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 19:59:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 19:59:50: #1 read tag files... INFO @ Fri, 05 Jul 2019 19:59:50: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 19:59:51: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 19:59:51: #1 read tag files... INFO @ Fri, 05 Jul 2019 19:59:51: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 19:59:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 19:59:52: #1 read tag files... INFO @ Fri, 05 Jul 2019 19:59:52: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 19:59:56: 1000000 INFO @ Fri, 05 Jul 2019 19:59:59: 1000000 INFO @ Fri, 05 Jul 2019 20:00:02: 1000000 INFO @ Fri, 05 Jul 2019 20:00:03: 2000000 INFO @ Fri, 05 Jul 2019 20:00:08: 2000000 INFO @ Fri, 05 Jul 2019 20:00:10: 3000000 INFO @ Fri, 05 Jul 2019 20:00:10: 2000000 INFO @ Fri, 05 Jul 2019 20:00:16: 3000000 INFO @ Fri, 05 Jul 2019 20:00:17: 4000000 INFO @ Fri, 05 Jul 2019 20:00:19: 3000000 INFO @ Fri, 05 Jul 2019 20:00:24: 5000000 INFO @ Fri, 05 Jul 2019 20:00:25: 4000000 INFO @ Fri, 05 Jul 2019 20:00:27: 4000000 INFO @ Fri, 05 Jul 2019 20:00:30: 6000000 INFO @ Fri, 05 Jul 2019 20:00:33: 5000000 INFO @ Fri, 05 Jul 2019 20:00:35: 5000000 INFO @ Fri, 05 Jul 2019 20:00:37: 7000000 INFO @ Fri, 05 Jul 2019 20:00:41: 6000000 INFO @ Fri, 05 Jul 2019 20:00:43: 6000000 INFO @ Fri, 05 Jul 2019 20:00:43: 8000000 INFO @ Fri, 05 Jul 2019 20:00:47: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 20:00:47: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 20:00:47: #1 total tags in treatment: 8554452 INFO @ Fri, 05 Jul 2019 20:00:47: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 20:00:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 20:00:47: #1 tags after filtering in treatment: 8554452 INFO @ Fri, 05 Jul 2019 20:00:47: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 20:00:47: #1 finished! INFO @ Fri, 05 Jul 2019 20:00:47: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 20:00:47: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 20:00:48: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 20:00:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 20:00:48: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 20:00:49: 7000000 INFO @ Fri, 05 Jul 2019 20:00:51: 7000000 INFO @ Fri, 05 Jul 2019 20:00:57: 8000000 INFO @ Fri, 05 Jul 2019 20:00:59: 8000000 INFO @ Fri, 05 Jul 2019 20:01:01: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 20:01:01: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 20:01:01: #1 total tags in treatment: 8554452 INFO @ Fri, 05 Jul 2019 20:01:01: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 20:01:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 20:01:01: #1 tags after filtering in treatment: 8554452 INFO @ Fri, 05 Jul 2019 20:01:01: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 20:01:01: #1 finished! INFO @ Fri, 05 Jul 2019 20:01:01: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 20:01:01: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 20:01:02: #2 number of paired peaks: 0 INFO @ Fri, 05 Jul 2019 20:01:04: #1 tag size is determined as 51 bps WARNING @ Fri, 05 Jul 2019 20:01:25: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 20:01:25: Process for pairing-model is terminated! INFO @ Fri, 05 Jul 2019 20:01:25: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 20:01:25: #1 total tags in treatment: 8554452 INFO @ Fri, 05 Jul 2019 20:01:25: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 20:01:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) cut: /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 20:01:25: #1 tags after filtering in treatment: 8554452 INFO @ Fri, 05 Jul 2019 20:01:25: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 20:01:25: #1 finished! INFO @ Fri, 05 Jul 2019 20:01:25: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 20:01:25: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 20:01:26: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 20:01:26: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 20:01:26: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1163833/SRX1163833.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。