Job ID = 14520319 SRX = SRX11361072 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 24322845 spots for SRR15050649/SRR15050649.sra Written 24322845 spots for SRR15050649/SRR15050649.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:04:35 24322845 reads; of these: 24322845 (100.00%) were unpaired; of these: 878191 (3.61%) aligned 0 times 18824987 (77.40%) aligned exactly 1 time 4619667 (18.99%) aligned >1 times 96.39% overall alignment rate Time searching: 00:04:35 Overall time: 00:04:35 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 12 files... [bam_rmdupse_core] 18644265 / 23444654 = 0.7952 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 19:06:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 19:06:58: #1 read tag files... INFO @ Sat, 15 Jan 2022 19:06:58: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 19:07:05: 1000000 INFO @ Sat, 15 Jan 2022 19:07:11: 2000000 INFO @ Sat, 15 Jan 2022 19:07:17: 3000000 INFO @ Sat, 15 Jan 2022 19:07:23: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 19:07:28: #1 tag size is determined as 67 bps INFO @ Sat, 15 Jan 2022 19:07:28: #1 tag size = 67 INFO @ Sat, 15 Jan 2022 19:07:28: #1 total tags in treatment: 4800389 INFO @ Sat, 15 Jan 2022 19:07:28: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 19:07:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 19:07:28: #1 tags after filtering in treatment: 4800389 INFO @ Sat, 15 Jan 2022 19:07:28: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 19:07:28: #1 finished! INFO @ Sat, 15 Jan 2022 19:07:28: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 19:07:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 19:07:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 19:07:28: #1 read tag files... INFO @ Sat, 15 Jan 2022 19:07:28: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 19:07:29: #2 number of paired peaks: 23 WARNING @ Sat, 15 Jan 2022 19:07:29: Too few paired peaks (23) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 19:07:29: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 19:07:35: 1000000 INFO @ Sat, 15 Jan 2022 19:07:42: 2000000 INFO @ Sat, 15 Jan 2022 19:07:48: 3000000 INFO @ Sat, 15 Jan 2022 19:07:54: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 19:07:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 19:07:58: #1 read tag files... INFO @ Sat, 15 Jan 2022 19:07:58: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 19:07:59: #1 tag size is determined as 67 bps INFO @ Sat, 15 Jan 2022 19:07:59: #1 tag size = 67 INFO @ Sat, 15 Jan 2022 19:07:59: #1 total tags in treatment: 4800389 INFO @ Sat, 15 Jan 2022 19:07:59: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 19:07:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 19:07:59: #1 tags after filtering in treatment: 4800389 INFO @ Sat, 15 Jan 2022 19:07:59: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 19:07:59: #1 finished! INFO @ Sat, 15 Jan 2022 19:07:59: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 19:07:59: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 19:07:59: #2 number of paired peaks: 23 WARNING @ Sat, 15 Jan 2022 19:07:59: Too few paired peaks (23) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 19:07:59: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 19:08:05: 1000000 INFO @ Sat, 15 Jan 2022 19:08:11: 2000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 19:08:18: 3000000 INFO @ Sat, 15 Jan 2022 19:08:24: 4000000 BigWig に変換しました。 INFO @ Sat, 15 Jan 2022 19:08:29: #1 tag size is determined as 67 bps INFO @ Sat, 15 Jan 2022 19:08:29: #1 tag size = 67 INFO @ Sat, 15 Jan 2022 19:08:29: #1 total tags in treatment: 4800389 INFO @ Sat, 15 Jan 2022 19:08:29: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 19:08:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 19:08:29: #1 tags after filtering in treatment: 4800389 INFO @ Sat, 15 Jan 2022 19:08:29: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 19:08:29: #1 finished! INFO @ Sat, 15 Jan 2022 19:08:29: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 19:08:29: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 19:08:30: #2 number of paired peaks: 23 WARNING @ Sat, 15 Jan 2022 19:08:30: Too few paired peaks (23) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 19:08:30: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX11361072/SRX11361072.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling