Job ID = 2009705 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 8,154,495 reads read : 8,154,495 reads written : 8,154,495 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:59 8154495 reads; of these: 8154495 (100.00%) were unpaired; of these: 1608208 (19.72%) aligned 0 times 5453168 (66.87%) aligned exactly 1 time 1093119 (13.41%) aligned >1 times 80.28% overall alignment rate Time searching: 00:00:59 Overall time: 00:00:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 1725272 / 6546287 = 0.2635 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 19:41:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 19:41:30: #1 read tag files... INFO @ Fri, 05 Jul 2019 19:41:30: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 19:41:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 19:41:31: #1 read tag files... INFO @ Fri, 05 Jul 2019 19:41:31: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 19:41:32: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 19:41:32: #1 read tag files... INFO @ Fri, 05 Jul 2019 19:41:32: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 19:41:38: 1000000 INFO @ Fri, 05 Jul 2019 19:41:39: 1000000 INFO @ Fri, 05 Jul 2019 19:41:39: 1000000 INFO @ Fri, 05 Jul 2019 19:41:46: 2000000 INFO @ Fri, 05 Jul 2019 19:41:47: 2000000 INFO @ Fri, 05 Jul 2019 19:41:47: 2000000 INFO @ Fri, 05 Jul 2019 19:41:54: 3000000 INFO @ Fri, 05 Jul 2019 19:41:55: 3000000 INFO @ Fri, 05 Jul 2019 19:41:55: 3000000 INFO @ Fri, 05 Jul 2019 19:42:01: 4000000 INFO @ Fri, 05 Jul 2019 19:42:01: 4000000 INFO @ Fri, 05 Jul 2019 19:42:03: 4000000 INFO @ Fri, 05 Jul 2019 19:42:07: #1 tag size is determined as 32 bps INFO @ Fri, 05 Jul 2019 19:42:07: #1 tag size = 32 INFO @ Fri, 05 Jul 2019 19:42:07: #1 total tags in treatment: 4821015 INFO @ Fri, 05 Jul 2019 19:42:07: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 19:42:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 19:42:07: #1 tags after filtering in treatment: 4821015 INFO @ Fri, 05 Jul 2019 19:42:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 19:42:07: #1 finished! INFO @ Fri, 05 Jul 2019 19:42:07: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 19:42:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 19:42:07: #2 number of paired peaks: 16 WARNING @ Fri, 05 Jul 2019 19:42:07: Too few paired peaks (16) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 19:42:07: Process for pairing-model is terminated! INFO @ Fri, 05 Jul 2019 19:42:07: #1 tag size is determined as 32 bps INFO @ Fri, 05 Jul 2019 19:42:07: #1 tag size = 32 INFO @ Fri, 05 Jul 2019 19:42:07: #1 total tags in treatment: 4821015 INFO @ Fri, 05 Jul 2019 19:42:07: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 19:42:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) cut: /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 19:42:07: #1 tags after filtering in treatment: 4821015 INFO @ Fri, 05 Jul 2019 19:42:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 19:42:07: #1 finished! INFO @ Fri, 05 Jul 2019 19:42:07: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 19:42:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 19:42:08: #2 number of paired peaks: 16 WARNING @ Fri, 05 Jul 2019 19:42:08: Too few paired peaks (16) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 19:42:08: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 19:42:10: #1 tag size is determined as 32 bps INFO @ Fri, 05 Jul 2019 19:42:10: #1 tag size = 32 INFO @ Fri, 05 Jul 2019 19:42:10: #1 total tags in treatment: 4821015 INFO @ Fri, 05 Jul 2019 19:42:10: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 19:42:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 19:42:10: #1 tags after filtering in treatment: 4821015 INFO @ Fri, 05 Jul 2019 19:42:10: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 19:42:10: #1 finished! INFO @ Fri, 05 Jul 2019 19:42:10: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 19:42:10: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 19:42:10: #2 number of paired peaks: 16 WARNING @ Fri, 05 Jul 2019 19:42:10: Too few paired peaks (16) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 19:42:10: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX1067734/SRX1067734.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。