Job ID = 14521451 SRX = SRX10468475 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 4434716 spots for SRR14094887/SRR14094887.sra Written 4434716 spots for SRR14094887/SRR14094887.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:33 4434716 reads; of these: 4434716 (100.00%) were paired; of these: 663811 (14.97%) aligned concordantly 0 times 3049293 (68.76%) aligned concordantly exactly 1 time 721612 (16.27%) aligned concordantly >1 times ---- 663811 pairs aligned concordantly 0 times; of these: 40313 (6.07%) aligned discordantly 1 time ---- 623498 pairs aligned 0 times concordantly or discordantly; of these: 1246996 mates make up the pairs; of these: 1157033 (92.79%) aligned 0 times 53032 (4.25%) aligned exactly 1 time 36931 (2.96%) aligned >1 times 86.95% overall alignment rate Time searching: 00:01:33 Overall time: 00:01:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrIX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrVI... [bam_rmdup_core] processing reference chrVII... [bam_rmdup_core] processing reference chrVIII... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXI... [bam_rmdup_core] processing reference chrXII... [bam_rmdup_core] processing reference chrXIII... [bam_rmdup_core] processing reference chrXIV... [bam_rmdup_core] processing reference chrXV... [bam_rmdup_core] processing reference chrXVI... [bam_rmdup_core] 91991 / 3774158 = 0.0244 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 21:03:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 21:03:04: #1 read tag files... INFO @ Sat, 15 Jan 2022 21:03:04: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 21:03:09: 1000000 INFO @ Sat, 15 Jan 2022 21:03:14: 2000000 INFO @ Sat, 15 Jan 2022 21:03:19: 3000000 INFO @ Sat, 15 Jan 2022 21:03:25: 4000000 INFO @ Sat, 15 Jan 2022 21:03:30: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 21:03:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 21:03:34: #1 read tag files... INFO @ Sat, 15 Jan 2022 21:03:34: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 21:03:36: 6000000 INFO @ Sat, 15 Jan 2022 21:03:39: 1000000 INFO @ Sat, 15 Jan 2022 21:03:42: 7000000 INFO @ Sat, 15 Jan 2022 21:03:45: #1 tag size is determined as 25 bps INFO @ Sat, 15 Jan 2022 21:03:45: #1 tag size = 25 INFO @ Sat, 15 Jan 2022 21:03:45: #1 total tags in treatment: 3678940 INFO @ Sat, 15 Jan 2022 21:03:45: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 21:03:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 21:03:45: #1 tags after filtering in treatment: 3026766 INFO @ Sat, 15 Jan 2022 21:03:45: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 15 Jan 2022 21:03:45: #1 finished! INFO @ Sat, 15 Jan 2022 21:03:45: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 21:03:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 21:03:45: #2 number of paired peaks: 28 WARNING @ Sat, 15 Jan 2022 21:03:45: Too few paired peaks (28) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 21:03:45: Process for pairing-model is terminated! INFO @ Sat, 15 Jan 2022 21:03:45: 2000000 cut: /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 21:03:50: 3000000 INFO @ Sat, 15 Jan 2022 21:03:55: 4000000 INFO @ Sat, 15 Jan 2022 21:03:59: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 21:04:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 21:04:04: #1 read tag files... INFO @ Sat, 15 Jan 2022 21:04:04: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 21:04:04: 6000000 INFO @ Sat, 15 Jan 2022 21:04:10: 1000000 INFO @ Sat, 15 Jan 2022 21:04:10: 7000000 INFO @ Sat, 15 Jan 2022 21:04:13: #1 tag size is determined as 25 bps INFO @ Sat, 15 Jan 2022 21:04:13: #1 tag size = 25 INFO @ Sat, 15 Jan 2022 21:04:13: #1 total tags in treatment: 3678940 INFO @ Sat, 15 Jan 2022 21:04:13: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 21:04:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 21:04:13: #1 tags after filtering in treatment: 3026766 INFO @ Sat, 15 Jan 2022 21:04:13: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 15 Jan 2022 21:04:13: #1 finished! INFO @ Sat, 15 Jan 2022 21:04:13: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 21:04:13: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 21:04:13: #2 number of paired peaks: 28 WARNING @ Sat, 15 Jan 2022 21:04:13: Too few paired peaks (28) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 21:04:13: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 21:04:15: 2000000 INFO @ Sat, 15 Jan 2022 21:04:21: 3000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 21:04:26: 4000000 INFO @ Sat, 15 Jan 2022 21:04:31: 5000000 BigWig に変換しました。 INFO @ Sat, 15 Jan 2022 21:04:37: 6000000 INFO @ Sat, 15 Jan 2022 21:04:42: 7000000 INFO @ Sat, 15 Jan 2022 21:04:45: #1 tag size is determined as 25 bps INFO @ Sat, 15 Jan 2022 21:04:45: #1 tag size = 25 INFO @ Sat, 15 Jan 2022 21:04:45: #1 total tags in treatment: 3678940 INFO @ Sat, 15 Jan 2022 21:04:45: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 21:04:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 21:04:45: #1 tags after filtering in treatment: 3026766 INFO @ Sat, 15 Jan 2022 21:04:45: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 15 Jan 2022 21:04:45: #1 finished! INFO @ Sat, 15 Jan 2022 21:04:45: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 21:04:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 21:04:45: #2 number of paired peaks: 28 WARNING @ Sat, 15 Jan 2022 21:04:45: Too few paired peaks (28) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 21:04:45: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10468475/SRX10468475.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling