Job ID = 14519991 SRX = SRX10341713 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 6736308 spots for SRR13963721/SRR13963721.sra Written 6736308 spots for SRR13963721/SRR13963721.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:56 6736308 reads; of these: 6736308 (100.00%) were unpaired; of these: 748156 (11.11%) aligned 0 times 5353006 (79.46%) aligned exactly 1 time 635146 (9.43%) aligned >1 times 88.89% overall alignment rate Time searching: 00:00:56 Overall time: 00:00:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 151282 / 5988152 = 0.0253 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:18:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:18:33: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:18:33: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:18:38: 1000000 INFO @ Sat, 15 Jan 2022 18:18:44: 2000000 INFO @ Sat, 15 Jan 2022 18:18:49: 3000000 INFO @ Sat, 15 Jan 2022 18:18:55: 4000000 INFO @ Sat, 15 Jan 2022 18:19:00: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:19:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:19:03: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:19:03: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:19:05: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:19:05: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:19:05: #1 total tags in treatment: 5836870 INFO @ Sat, 15 Jan 2022 18:19:05: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:19:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:19:05: #1 tags after filtering in treatment: 5836870 INFO @ Sat, 15 Jan 2022 18:19:05: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:19:05: #1 finished! INFO @ Sat, 15 Jan 2022 18:19:05: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:19:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:19:05: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:19:05: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:19:05: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 18:19:08: 1000000 INFO @ Sat, 15 Jan 2022 18:19:14: 2000000 INFO @ Sat, 15 Jan 2022 18:19:19: 3000000 INFO @ Sat, 15 Jan 2022 18:19:24: 4000000 INFO @ Sat, 15 Jan 2022 18:19:30: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:19:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:19:33: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:19:33: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:19:34: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:19:34: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:19:34: #1 total tags in treatment: 5836870 INFO @ Sat, 15 Jan 2022 18:19:34: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:19:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:19:34: #1 tags after filtering in treatment: 5836870 INFO @ Sat, 15 Jan 2022 18:19:34: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:19:34: #1 finished! INFO @ Sat, 15 Jan 2022 18:19:34: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:19:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:19:35: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:19:35: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:19:35: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 18:19:38: 1000000 INFO @ Sat, 15 Jan 2022 18:19:44: 2000000 INFO @ Sat, 15 Jan 2022 18:19:49: 3000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 18:19:55: 4000000 INFO @ Sat, 15 Jan 2022 18:20:00: 5000000 BigWig に変換しました。 INFO @ Sat, 15 Jan 2022 18:20:05: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:20:05: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:20:05: #1 total tags in treatment: 5836870 INFO @ Sat, 15 Jan 2022 18:20:05: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:20:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:20:05: #1 tags after filtering in treatment: 5836870 INFO @ Sat, 15 Jan 2022 18:20:05: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:20:05: #1 finished! INFO @ Sat, 15 Jan 2022 18:20:05: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:20:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:20:05: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:20:05: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:20:05: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341713/SRX10341713.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling