Job ID = 14519955 SRX = SRX10341707 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 14329391 spots for SRR13963715/SRR13963715.sra Written 14329391 spots for SRR13963715/SRR13963715.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:41 14329391 reads; of these: 14329391 (100.00%) were unpaired; of these: 1381212 (9.64%) aligned 0 times 8630429 (60.23%) aligned exactly 1 time 4317750 (30.13%) aligned >1 times 90.36% overall alignment rate Time searching: 00:01:41 Overall time: 00:01:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 5794794 / 12948179 = 0.4475 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:17:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:17:23: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:17:23: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:17:28: 1000000 INFO @ Sat, 15 Jan 2022 18:17:33: 2000000 INFO @ Sat, 15 Jan 2022 18:17:37: 3000000 INFO @ Sat, 15 Jan 2022 18:17:42: 4000000 INFO @ Sat, 15 Jan 2022 18:17:46: 5000000 INFO @ Sat, 15 Jan 2022 18:17:50: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:17:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:17:53: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:17:53: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:17:55: 7000000 INFO @ Sat, 15 Jan 2022 18:17:56: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:17:56: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:17:56: #1 total tags in treatment: 7153385 INFO @ Sat, 15 Jan 2022 18:17:56: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:17:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:17:56: #1 tags after filtering in treatment: 7153385 INFO @ Sat, 15 Jan 2022 18:17:56: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:17:56: #1 finished! INFO @ Sat, 15 Jan 2022 18:17:56: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:17:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:17:56: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:17:56: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:17:56: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 18:17:59: 1000000 INFO @ Sat, 15 Jan 2022 18:18:04: 2000000 INFO @ Sat, 15 Jan 2022 18:18:09: 3000000 INFO @ Sat, 15 Jan 2022 18:18:15: 4000000 INFO @ Sat, 15 Jan 2022 18:18:20: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 18:18:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 18:18:23: #1 read tag files... INFO @ Sat, 15 Jan 2022 18:18:23: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 18:18:26: 6000000 INFO @ Sat, 15 Jan 2022 18:18:29: 1000000 INFO @ Sat, 15 Jan 2022 18:18:32: 7000000 INFO @ Sat, 15 Jan 2022 18:18:33: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:18:33: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:18:33: #1 total tags in treatment: 7153385 INFO @ Sat, 15 Jan 2022 18:18:33: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:18:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:18:33: #1 tags after filtering in treatment: 7153385 INFO @ Sat, 15 Jan 2022 18:18:33: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:18:33: #1 finished! INFO @ Sat, 15 Jan 2022 18:18:33: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:18:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:18:33: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:18:33: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:18:33: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 18:18:34: 2000000 INFO @ Sat, 15 Jan 2022 18:18:39: 3000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 18:18:46: 4000000 INFO @ Sat, 15 Jan 2022 18:18:51: 5000000 BigWig に変換しました。 INFO @ Sat, 15 Jan 2022 18:18:56: 6000000 INFO @ Sat, 15 Jan 2022 18:19:02: 7000000 INFO @ Sat, 15 Jan 2022 18:19:02: #1 tag size is determined as 50 bps INFO @ Sat, 15 Jan 2022 18:19:02: #1 tag size = 50 INFO @ Sat, 15 Jan 2022 18:19:02: #1 total tags in treatment: 7153385 INFO @ Sat, 15 Jan 2022 18:19:02: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 18:19:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 18:19:03: #1 tags after filtering in treatment: 7153385 INFO @ Sat, 15 Jan 2022 18:19:03: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 18:19:03: #1 finished! INFO @ Sat, 15 Jan 2022 18:19:03: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 18:19:03: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 18:19:03: #2 number of paired peaks: 0 WARNING @ Sat, 15 Jan 2022 18:19:03: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 18:19:03: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX10341707/SRX10341707.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling