Job ID = 9161740 sra ファイルのダウンロード中... Completed: 497549K bytes transferred in 7 seconds (512721K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 18682226 spots for /home/okishinya/chipatlas/results/sacCer3/SRX1004448/SRR1986266.sra Written 18682226 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:04:01 18682226 reads; of these: 18682226 (100.00%) were unpaired; of these: 1303832 (6.98%) aligned 0 times 15539538 (83.18%) aligned exactly 1 time 1838856 (9.84%) aligned >1 times 93.02% overall alignment rate Time searching: 00:04:01 Overall time: 00:04:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 10006112 / 17378394 = 0.5758 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Wed, 28 Jun 2017 04:34:44: # Command line: callpeak -t SRX1004448.bam -f BAM -g 12100000 -n SRX1004448.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1004448.10 # format = BAM # ChIP-seq file = ['SRX1004448.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 04:34:44: # Command line: callpeak -t SRX1004448.bam -f BAM -g 12100000 -n SRX1004448.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1004448.20 # format = BAM # ChIP-seq file = ['SRX1004448.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 04:34:44: # Command line: callpeak -t SRX1004448.bam -f BAM -g 12100000 -n SRX1004448.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1004448.05 # format = BAM # ChIP-seq file = ['SRX1004448.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 04:34:44: #1 read tag files... INFO @ Wed, 28 Jun 2017 04:34:44: #1 read tag files... INFO @ Wed, 28 Jun 2017 04:34:44: #1 read tag files... INFO @ Wed, 28 Jun 2017 04:34:44: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 04:34:44: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 04:34:44: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 04:34:51: 1000000 INFO @ Wed, 28 Jun 2017 04:34:51: 1000000 INFO @ Wed, 28 Jun 2017 04:34:52: 1000000 INFO @ Wed, 28 Jun 2017 04:34:59: 2000000 INFO @ Wed, 28 Jun 2017 04:34:59: 2000000 INFO @ Wed, 28 Jun 2017 04:35:00: 2000000 INFO @ Wed, 28 Jun 2017 04:35:06: 3000000 INFO @ Wed, 28 Jun 2017 04:35:06: 3000000 INFO @ Wed, 28 Jun 2017 04:35:08: 3000000 INFO @ Wed, 28 Jun 2017 04:35:14: 4000000 INFO @ Wed, 28 Jun 2017 04:35:14: 4000000 INFO @ Wed, 28 Jun 2017 04:35:16: 4000000 INFO @ Wed, 28 Jun 2017 04:35:22: 5000000 INFO @ Wed, 28 Jun 2017 04:35:22: 5000000 INFO @ Wed, 28 Jun 2017 04:35:25: 5000000 INFO @ Wed, 28 Jun 2017 04:35:30: 6000000 INFO @ Wed, 28 Jun 2017 04:35:30: 6000000 INFO @ Wed, 28 Jun 2017 04:35:33: 6000000 INFO @ Wed, 28 Jun 2017 04:35:37: 7000000 INFO @ Wed, 28 Jun 2017 04:35:37: 7000000 INFO @ Wed, 28 Jun 2017 04:35:40: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 04:35:40: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 04:35:40: #1 total tags in treatment: 7372282 INFO @ Wed, 28 Jun 2017 04:35:40: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 04:35:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 04:35:40: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 04:35:40: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 04:35:40: #1 total tags in treatment: 7372282 INFO @ Wed, 28 Jun 2017 04:35:40: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 04:35:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 04:35:40: #1 tags after filtering in treatment: 7372282 INFO @ Wed, 28 Jun 2017 04:35:40: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 04:35:40: #1 tags after filtering in treatment: 7372282 INFO @ Wed, 28 Jun 2017 04:35:40: #1 finished! INFO @ Wed, 28 Jun 2017 04:35:40: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 04:35:40: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 04:35:40: #1 finished! INFO @ Wed, 28 Jun 2017 04:35:40: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 04:35:40: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 04:35:40: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 04:35:41: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 04:35:41: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 04:35:41: Process for pairing-model is terminated! INFO @ Wed, 28 Jun 2017 04:35:41: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 04:35:41: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 04:35:41: Process for pairing-model is terminated! cat: SRX1004448.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX1004448.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1004448.20_model.r': そのようなファイルやディレクトリはありません rm: rm: cannot remove `SRX1004448.20_*.xls'cannot remove `SRX1004448.05_model.r': そのようなファイルやディレクトリはありません : そのようなファイルやディレクトリはありません rm: cannot remove `SRX1004448.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1004448.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1004448.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 04:35:41: 7000000 INFO @ Wed, 28 Jun 2017 04:35:44: #1 tag size is determined as 51 bps INFO @ Wed, 28 Jun 2017 04:35:44: #1 tag size = 51 INFO @ Wed, 28 Jun 2017 04:35:44: #1 total tags in treatment: 7372282 INFO @ Wed, 28 Jun 2017 04:35:44: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 04:35:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 04:35:44: #1 tags after filtering in treatment: 7372282 INFO @ Wed, 28 Jun 2017 04:35:44: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 04:35:44: #1 finished! INFO @ Wed, 28 Jun 2017 04:35:44: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 04:35:44: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 04:35:44: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 04:35:44: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 04:35:44: Process for pairing-model is terminated! cat: SRX1004448.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1004448.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1004448.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1004448.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。