Job ID = 9161708 sra ファイルのダウンロード中... Completed: 167377K bytes transferred in 4 seconds (284693K bits/sec), in 2 files, 3 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 4391615 spots for /home/okishinya/chipatlas/results/sacCer3/SRX092433/SRR332226.sra Written 4391615 spots total Written 5193124 spots for /home/okishinya/chipatlas/results/sacCer3/SRX092433/SRR332225.sra Written 5193124 spots total fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:54 9584739 reads; of these: 9584739 (100.00%) were unpaired; of these: 4620910 (48.21%) aligned 0 times 4091074 (42.68%) aligned exactly 1 time 872755 (9.11%) aligned >1 times 51.79% overall alignment rate Time searching: 00:00:54 Overall time: 00:00:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 1145957 / 4963829 = 0.2309 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Wed, 28 Jun 2017 04:23:24: # Command line: callpeak -t SRX092433.bam -f BAM -g 12100000 -n SRX092433.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX092433.05 # format = BAM # ChIP-seq file = ['SRX092433.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 04:23:24: #1 read tag files... INFO @ Wed, 28 Jun 2017 04:23:24: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 04:23:24: # Command line: callpeak -t SRX092433.bam -f BAM -g 12100000 -n SRX092433.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX092433.20 # format = BAM # ChIP-seq file = ['SRX092433.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 04:23:24: #1 read tag files... INFO @ Wed, 28 Jun 2017 04:23:24: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 04:23:24: # Command line: callpeak -t SRX092433.bam -f BAM -g 12100000 -n SRX092433.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX092433.10 # format = BAM # ChIP-seq file = ['SRX092433.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 04:23:24: #1 read tag files... INFO @ Wed, 28 Jun 2017 04:23:24: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 04:23:31: 1000000 INFO @ Wed, 28 Jun 2017 04:23:31: 1000000 INFO @ Wed, 28 Jun 2017 04:23:31: 1000000 INFO @ Wed, 28 Jun 2017 04:23:37: 2000000 INFO @ Wed, 28 Jun 2017 04:23:38: 2000000 INFO @ Wed, 28 Jun 2017 04:23:38: 2000000 INFO @ Wed, 28 Jun 2017 04:23:44: 3000000 INFO @ Wed, 28 Jun 2017 04:23:46: 3000000 INFO @ Wed, 28 Jun 2017 04:23:46: 3000000 INFO @ Wed, 28 Jun 2017 04:23:49: #1 tag size is determined as 32 bps INFO @ Wed, 28 Jun 2017 04:23:49: #1 tag size = 32 INFO @ Wed, 28 Jun 2017 04:23:49: #1 total tags in treatment: 3817872 INFO @ Wed, 28 Jun 2017 04:23:49: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 04:23:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 04:23:49: #1 tags after filtering in treatment: 3817872 INFO @ Wed, 28 Jun 2017 04:23:49: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 04:23:49: #1 finished! INFO @ Wed, 28 Jun 2017 04:23:49: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 04:23:49: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 04:23:49: #2 number of paired peaks: 31 WARNING @ Wed, 28 Jun 2017 04:23:49: Too few paired peaks (31) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 04:23:49: Process for pairing-model is terminated! cat: SRX092433.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX092433.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX092433.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX092433.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 04:23:52: #1 tag size is determined as 32 bps INFO @ Wed, 28 Jun 2017 04:23:52: #1 tag size = 32 INFO @ Wed, 28 Jun 2017 04:23:52: #1 total tags in treatment: 3817872 INFO @ Wed, 28 Jun 2017 04:23:52: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 04:23:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 04:23:53: #1 tag size is determined as 32 bps INFO @ Wed, 28 Jun 2017 04:23:53: #1 tag size = 32 INFO @ Wed, 28 Jun 2017 04:23:53: #1 total tags in treatment: 3817872 INFO @ Wed, 28 Jun 2017 04:23:53: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 04:23:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 04:23:53: #1 tags after filtering in treatment: 3817872 INFO @ Wed, 28 Jun 2017 04:23:53: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 04:23:53: #1 finished! INFO @ Wed, 28 Jun 2017 04:23:53: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 04:23:53: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 04:23:53: #1 tags after filtering in treatment: 3817872 INFO @ Wed, 28 Jun 2017 04:23:53: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 04:23:53: #1 finished! INFO @ Wed, 28 Jun 2017 04:23:53: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 04:23:53: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 04:23:53: #2 number of paired peaks: 31 WARNING @ Wed, 28 Jun 2017 04:23:53: Too few paired peaks (31) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 04:23:53: Process for pairing-model is terminated! cat: SRX092433.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms)INFO @ Wed, 28 Jun 2017 04:23:53: #2 number of paired peaks: 31 : 1 millis WARNING @ Wed, 28 Jun 2017 04:23:53: Too few paired peaks (31) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 04:23:53: Process for pairing-model is terminated! needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX092433.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX092433.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX092433.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling cat: SRX092433.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX092433.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX092433.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX092433.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。