Job ID = 2006628 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 1,764,710 reads read : 1,764,710 reads written : 1,764,710 spots read : 1,678,326 reads read : 1,678,326 reads written : 1,678,326 spots read : 1,716,477 reads read : 1,716,477 reads written : 1,716,477 spots read : 1,700,498 reads read : 1,700,498 reads written : 1,700,498 rm: cannot remove ‘/home/okishinya/ncbi/public/sra/ERR2529551.sra.cache’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/ERR2529552.sra.cache’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/ERR2529553.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:37 6860011 reads; of these: 6860011 (100.00%) were unpaired; of these: 331422 (4.83%) aligned 0 times 5540468 (80.76%) aligned exactly 1 time 988121 (14.40%) aligned >1 times 95.17% overall alignment rate Time searching: 00:03:37 Overall time: 00:03:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 5749355 / 6528589 = 0.8806 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 15:43:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 15:43:28: #1 read tag files... INFO @ Fri, 05 Jul 2019 15:43:28: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 15:43:29: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 15:43:29: #1 read tag files... INFO @ Fri, 05 Jul 2019 15:43:29: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 15:43:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 15:43:30: #1 read tag files... INFO @ Fri, 05 Jul 2019 15:43:30: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 15:43:37: #1 tag size is determined as 75 bps INFO @ Fri, 05 Jul 2019 15:43:37: #1 tag size = 75 INFO @ Fri, 05 Jul 2019 15:43:37: #1 total tags in treatment: 779234 INFO @ Fri, 05 Jul 2019 15:43:37: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 15:43:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 15:43:37: #1 tags after filtering in treatment: 779234 INFO @ Fri, 05 Jul 2019 15:43:37: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 15:43:37: #1 finished! INFO @ Fri, 05 Jul 2019 15:43:37: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 15:43:37: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 15:43:38: #2 number of paired peaks: 93 WARNING @ Fri, 05 Jul 2019 15:43:38: Too few paired peaks (93) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 15:43:38: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 15:43:38: #1 tag size is determined as 75 bps INFO @ Fri, 05 Jul 2019 15:43:38: #1 tag size = 75 INFO @ Fri, 05 Jul 2019 15:43:38: #1 total tags in treatment: 779234 INFO @ Fri, 05 Jul 2019 15:43:38: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 15:43:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 15:43:38: #1 tags after filtering in treatment: 779234 INFO @ Fri, 05 Jul 2019 15:43:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 15:43:38: #1 finished! INFO @ Fri, 05 Jul 2019 15:43:38: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 15:43:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 15:43:38: #2 number of paired peaks: 93 WARNING @ Fri, 05 Jul 2019 15:43:38: Too few paired peaks (93) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 15:43:38: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 15:43:38: #1 tag size is determined as 75 bps INFO @ Fri, 05 Jul 2019 15:43:38: #1 tag size = 75 INFO @ Fri, 05 Jul 2019 15:43:38: #1 total tags in treatment: 779234 INFO @ Fri, 05 Jul 2019 15:43:38: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 15:43:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 15:43:38: #1 tags after filtering in treatment: 779234 INFO @ Fri, 05 Jul 2019 15:43:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 15:43:38: #1 finished! INFO @ Fri, 05 Jul 2019 15:43:38: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 15:43:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 15:43:38: #2 number of paired peaks: 93 WARNING @ Fri, 05 Jul 2019 15:43:38: Too few paired peaks (93) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 15:43:38: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/ERX2548171/ERX2548171.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。