Job ID = 8184613 SRX = SRX8047624 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T04:56:23 prefetch.2.10.7: 1) Downloading 'SRR11471348'... 2020-08-10T04:56:23 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T05:02:07 prefetch.2.10.7: HTTPS download succeed 2020-08-10T05:02:07 prefetch.2.10.7: 1) 'SRR11471348' was downloaded successfully Read 92690144 spots for SRR11471348/SRR11471348.sra Written 92690144 spots for SRR11471348/SRR11471348.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:17:32 92690144 reads; of these: 92690144 (100.00%) were unpaired; of these: 2643219 (2.85%) aligned 0 times 64420168 (69.50%) aligned exactly 1 time 25626757 (27.65%) aligned >1 times 97.15% overall alignment rate Time searching: 01:17:36 Overall time: 01:17:36 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 6562848 / 90046925 = 0.0729 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:46:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:46:42: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:46:42: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:46:48: 1000000 INFO @ Mon, 10 Aug 2020 15:46:54: 2000000 INFO @ Mon, 10 Aug 2020 15:47:00: 3000000 INFO @ Mon, 10 Aug 2020 15:47:06: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:47:11: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:47:11: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:47:11: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:47:11: 5000000 INFO @ Mon, 10 Aug 2020 15:47:18: 1000000 INFO @ Mon, 10 Aug 2020 15:47:18: 6000000 INFO @ Mon, 10 Aug 2020 15:47:25: 2000000 INFO @ Mon, 10 Aug 2020 15:47:25: 7000000 INFO @ Mon, 10 Aug 2020 15:47:31: 3000000 INFO @ Mon, 10 Aug 2020 15:47:32: 8000000 INFO @ Mon, 10 Aug 2020 15:47:38: 4000000 INFO @ Mon, 10 Aug 2020 15:47:39: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 15:47:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 15:47:41: #1 read tag files... INFO @ Mon, 10 Aug 2020 15:47:41: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 15:47:45: 5000000 INFO @ Mon, 10 Aug 2020 15:47:45: 10000000 INFO @ Mon, 10 Aug 2020 15:47:48: 1000000 INFO @ Mon, 10 Aug 2020 15:47:52: 11000000 INFO @ Mon, 10 Aug 2020 15:47:52: 6000000 INFO @ Mon, 10 Aug 2020 15:47:55: 2000000 INFO @ Mon, 10 Aug 2020 15:47:59: 12000000 INFO @ Mon, 10 Aug 2020 15:47:59: 7000000 INFO @ Mon, 10 Aug 2020 15:48:02: 3000000 INFO @ Mon, 10 Aug 2020 15:48:06: 13000000 INFO @ Mon, 10 Aug 2020 15:48:06: 8000000 INFO @ Mon, 10 Aug 2020 15:48:08: 4000000 INFO @ Mon, 10 Aug 2020 15:48:13: 14000000 INFO @ Mon, 10 Aug 2020 15:48:13: 9000000 INFO @ Mon, 10 Aug 2020 15:48:15: 5000000 INFO @ Mon, 10 Aug 2020 15:48:19: 15000000 INFO @ Mon, 10 Aug 2020 15:48:20: 10000000 INFO @ Mon, 10 Aug 2020 15:48:22: 6000000 INFO @ Mon, 10 Aug 2020 15:48:26: 16000000 INFO @ Mon, 10 Aug 2020 15:48:27: 11000000 INFO @ Mon, 10 Aug 2020 15:48:29: 7000000 INFO @ Mon, 10 Aug 2020 15:48:33: 17000000 INFO @ Mon, 10 Aug 2020 15:48:34: 12000000 INFO @ Mon, 10 Aug 2020 15:48:36: 8000000 INFO @ Mon, 10 Aug 2020 15:48:40: 18000000 INFO @ Mon, 10 Aug 2020 15:48:41: 13000000 INFO @ Mon, 10 Aug 2020 15:48:43: 9000000 INFO @ Mon, 10 Aug 2020 15:48:47: 19000000 INFO @ Mon, 10 Aug 2020 15:48:48: 14000000 INFO @ Mon, 10 Aug 2020 15:48:50: 10000000 INFO @ Mon, 10 Aug 2020 15:48:54: 20000000 INFO @ Mon, 10 Aug 2020 15:48:54: 15000000 INFO @ Mon, 10 Aug 2020 15:48:57: 11000000 INFO @ Mon, 10 Aug 2020 15:49:01: 21000000 INFO @ Mon, 10 Aug 2020 15:49:01: 16000000 INFO @ Mon, 10 Aug 2020 15:49:04: 12000000 INFO @ Mon, 10 Aug 2020 15:49:07: 22000000 INFO @ Mon, 10 Aug 2020 15:49:08: 17000000 INFO @ Mon, 10 Aug 2020 15:49:10: 13000000 INFO @ Mon, 10 Aug 2020 15:49:14: 23000000 INFO @ Mon, 10 Aug 2020 15:49:15: 18000000 INFO @ Mon, 10 Aug 2020 15:49:17: 14000000 INFO @ Mon, 10 Aug 2020 15:49:21: 24000000 INFO @ Mon, 10 Aug 2020 15:49:22: 19000000 INFO @ Mon, 10 Aug 2020 15:49:24: 15000000 INFO @ Mon, 10 Aug 2020 15:49:28: 25000000 INFO @ Mon, 10 Aug 2020 15:49:29: 20000000 INFO @ Mon, 10 Aug 2020 15:49:31: 16000000 INFO @ Mon, 10 Aug 2020 15:49:35: 26000000 INFO @ Mon, 10 Aug 2020 15:49:36: 21000000 INFO @ Mon, 10 Aug 2020 15:49:38: 17000000 INFO @ Mon, 10 Aug 2020 15:49:42: 27000000 INFO @ Mon, 10 Aug 2020 15:49:43: 22000000 INFO @ Mon, 10 Aug 2020 15:49:45: 18000000 INFO @ Mon, 10 Aug 2020 15:49:49: 28000000 INFO @ Mon, 10 Aug 2020 15:49:50: 23000000 INFO @ Mon, 10 Aug 2020 15:49:52: 19000000 INFO @ Mon, 10 Aug 2020 15:49:55: 29000000 INFO @ Mon, 10 Aug 2020 15:49:56: 24000000 INFO @ Mon, 10 Aug 2020 15:49:59: 20000000 INFO @ Mon, 10 Aug 2020 15:50:02: 30000000 INFO @ Mon, 10 Aug 2020 15:50:03: 25000000 INFO @ Mon, 10 Aug 2020 15:50:06: 21000000 INFO @ Mon, 10 Aug 2020 15:50:09: 31000000 INFO @ Mon, 10 Aug 2020 15:50:10: 26000000 INFO @ Mon, 10 Aug 2020 15:50:13: 22000000 INFO @ Mon, 10 Aug 2020 15:50:16: 32000000 INFO @ Mon, 10 Aug 2020 15:50:17: 27000000 INFO @ Mon, 10 Aug 2020 15:50:20: 23000000 INFO @ Mon, 10 Aug 2020 15:50:23: 33000000 INFO @ Mon, 10 Aug 2020 15:50:24: 28000000 INFO @ Mon, 10 Aug 2020 15:50:26: 24000000 INFO @ Mon, 10 Aug 2020 15:50:30: 34000000 INFO @ Mon, 10 Aug 2020 15:50:31: 29000000 INFO @ Mon, 10 Aug 2020 15:50:33: 25000000 INFO @ Mon, 10 Aug 2020 15:50:37: 35000000 INFO @ Mon, 10 Aug 2020 15:50:38: 30000000 INFO @ Mon, 10 Aug 2020 15:50:40: 26000000 INFO @ Mon, 10 Aug 2020 15:50:43: 36000000 INFO @ Mon, 10 Aug 2020 15:50:45: 31000000 INFO @ Mon, 10 Aug 2020 15:50:47: 27000000 INFO @ Mon, 10 Aug 2020 15:50:50: 37000000 INFO @ Mon, 10 Aug 2020 15:50:52: 32000000 INFO @ Mon, 10 Aug 2020 15:50:54: 28000000 INFO @ Mon, 10 Aug 2020 15:50:57: 38000000 INFO @ Mon, 10 Aug 2020 15:50:59: 33000000 INFO @ Mon, 10 Aug 2020 15:51:01: 29000000 INFO @ Mon, 10 Aug 2020 15:51:04: 39000000 INFO @ Mon, 10 Aug 2020 15:51:05: 34000000 INFO @ Mon, 10 Aug 2020 15:51:08: 30000000 INFO @ Mon, 10 Aug 2020 15:51:11: 40000000 INFO @ Mon, 10 Aug 2020 15:51:12: 35000000 INFO @ Mon, 10 Aug 2020 15:51:15: 31000000 INFO @ Mon, 10 Aug 2020 15:51:18: 41000000 INFO @ Mon, 10 Aug 2020 15:51:19: 36000000 INFO @ Mon, 10 Aug 2020 15:51:22: 32000000 INFO @ Mon, 10 Aug 2020 15:51:24: 42000000 INFO @ Mon, 10 Aug 2020 15:51:26: 37000000 INFO @ Mon, 10 Aug 2020 15:51:29: 33000000 INFO @ Mon, 10 Aug 2020 15:51:31: 43000000 INFO @ Mon, 10 Aug 2020 15:51:33: 38000000 INFO @ Mon, 10 Aug 2020 15:51:36: 34000000 INFO @ Mon, 10 Aug 2020 15:51:38: 44000000 INFO @ Mon, 10 Aug 2020 15:51:40: 39000000 INFO @ Mon, 10 Aug 2020 15:51:42: 35000000 INFO @ Mon, 10 Aug 2020 15:51:45: 45000000 INFO @ Mon, 10 Aug 2020 15:51:47: 40000000 INFO @ Mon, 10 Aug 2020 15:51:49: 36000000 INFO @ Mon, 10 Aug 2020 15:51:52: 46000000 INFO @ Mon, 10 Aug 2020 15:51:54: 41000000 INFO @ Mon, 10 Aug 2020 15:51:56: 37000000 INFO @ Mon, 10 Aug 2020 15:51:59: 47000000 INFO @ Mon, 10 Aug 2020 15:52:01: 42000000 INFO @ Mon, 10 Aug 2020 15:52:03: 38000000 INFO @ Mon, 10 Aug 2020 15:52:05: 48000000 INFO @ Mon, 10 Aug 2020 15:52:07: 43000000 INFO @ Mon, 10 Aug 2020 15:52:10: 39000000 INFO @ Mon, 10 Aug 2020 15:52:12: 49000000 INFO @ Mon, 10 Aug 2020 15:52:14: 44000000 INFO @ Mon, 10 Aug 2020 15:52:17: 40000000 INFO @ Mon, 10 Aug 2020 15:52:19: 50000000 INFO @ Mon, 10 Aug 2020 15:52:21: 45000000 INFO @ Mon, 10 Aug 2020 15:52:24: 41000000 INFO @ Mon, 10 Aug 2020 15:52:26: 51000000 INFO @ Mon, 10 Aug 2020 15:52:28: 46000000 INFO @ Mon, 10 Aug 2020 15:52:31: 42000000 INFO @ Mon, 10 Aug 2020 15:52:33: 52000000 INFO @ Mon, 10 Aug 2020 15:52:35: 47000000 INFO @ Mon, 10 Aug 2020 15:52:38: 43000000 INFO @ Mon, 10 Aug 2020 15:52:40: 53000000 INFO @ Mon, 10 Aug 2020 15:52:42: 48000000 INFO @ Mon, 10 Aug 2020 15:52:44: 44000000 INFO @ Mon, 10 Aug 2020 15:52:47: 54000000 INFO @ Mon, 10 Aug 2020 15:52:49: 49000000 INFO @ Mon, 10 Aug 2020 15:52:51: 45000000 INFO @ Mon, 10 Aug 2020 15:52:53: 55000000 INFO @ Mon, 10 Aug 2020 15:52:56: 50000000 INFO @ Mon, 10 Aug 2020 15:52:58: 46000000 INFO @ Mon, 10 Aug 2020 15:53:00: 56000000 INFO @ Mon, 10 Aug 2020 15:53:02: 51000000 INFO @ Mon, 10 Aug 2020 15:53:05: 47000000 INFO @ Mon, 10 Aug 2020 15:53:07: 57000000 INFO @ Mon, 10 Aug 2020 15:53:09: 52000000 INFO @ Mon, 10 Aug 2020 15:53:12: 48000000 INFO @ Mon, 10 Aug 2020 15:53:14: 58000000 INFO @ Mon, 10 Aug 2020 15:53:16: 53000000 INFO @ Mon, 10 Aug 2020 15:53:19: 49000000 INFO @ Mon, 10 Aug 2020 15:53:21: 59000000 INFO @ Mon, 10 Aug 2020 15:53:23: 54000000 INFO @ Mon, 10 Aug 2020 15:53:26: 50000000 INFO @ Mon, 10 Aug 2020 15:53:28: 60000000 INFO @ Mon, 10 Aug 2020 15:53:30: 55000000 INFO @ Mon, 10 Aug 2020 15:53:33: 51000000 INFO @ Mon, 10 Aug 2020 15:53:35: 61000000 INFO @ Mon, 10 Aug 2020 15:53:37: 56000000 INFO @ Mon, 10 Aug 2020 15:53:40: 52000000 INFO @ Mon, 10 Aug 2020 15:53:41: 62000000 INFO @ Mon, 10 Aug 2020 15:53:44: 57000000 INFO @ Mon, 10 Aug 2020 15:53:46: 53000000 INFO @ Mon, 10 Aug 2020 15:53:48: 63000000 INFO @ Mon, 10 Aug 2020 15:53:50: 58000000 INFO @ Mon, 10 Aug 2020 15:53:53: 54000000 INFO @ Mon, 10 Aug 2020 15:53:55: 64000000 INFO @ Mon, 10 Aug 2020 15:53:57: 59000000 INFO @ Mon, 10 Aug 2020 15:54:00: 55000000 INFO @ Mon, 10 Aug 2020 15:54:02: 65000000 INFO @ Mon, 10 Aug 2020 15:54:04: 60000000 INFO @ Mon, 10 Aug 2020 15:54:07: 56000000 INFO @ Mon, 10 Aug 2020 15:54:09: 66000000 INFO @ Mon, 10 Aug 2020 15:54:11: 61000000 INFO @ Mon, 10 Aug 2020 15:54:14: 57000000 INFO @ Mon, 10 Aug 2020 15:54:16: 67000000 INFO @ Mon, 10 Aug 2020 15:54:18: 62000000 INFO @ Mon, 10 Aug 2020 15:54:21: 58000000 INFO @ Mon, 10 Aug 2020 15:54:23: 68000000 INFO @ Mon, 10 Aug 2020 15:54:25: 63000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 15:54:28: 59000000 INFO @ Mon, 10 Aug 2020 15:54:29: 69000000 INFO @ Mon, 10 Aug 2020 15:54:32: 64000000 INFO @ Mon, 10 Aug 2020 15:54:35: 60000000 INFO @ Mon, 10 Aug 2020 15:54:36: 70000000 INFO @ Mon, 10 Aug 2020 15:54:39: 65000000 INFO @ Mon, 10 Aug 2020 15:54:42: 61000000 INFO @ Mon, 10 Aug 2020 15:54:43: 71000000 INFO @ Mon, 10 Aug 2020 15:54:46: 66000000 INFO @ Mon, 10 Aug 2020 15:54:49: 62000000 INFO @ Mon, 10 Aug 2020 15:54:50: 72000000 INFO @ Mon, 10 Aug 2020 15:54:52: 67000000 INFO @ Mon, 10 Aug 2020 15:54:56: 63000000 INFO @ Mon, 10 Aug 2020 15:54:57: 73000000 INFO @ Mon, 10 Aug 2020 15:54:59: 68000000 INFO @ Mon, 10 Aug 2020 15:55:02: 64000000 INFO @ Mon, 10 Aug 2020 15:55:04: 74000000 INFO @ Mon, 10 Aug 2020 15:55:06: 69000000 INFO @ Mon, 10 Aug 2020 15:55:09: 65000000 INFO @ Mon, 10 Aug 2020 15:55:11: 75000000 INFO @ Mon, 10 Aug 2020 15:55:13: 70000000 INFO @ Mon, 10 Aug 2020 15:55:16: 66000000 INFO @ Mon, 10 Aug 2020 15:55:18: 76000000 INFO @ Mon, 10 Aug 2020 15:55:20: 71000000 INFO @ Mon, 10 Aug 2020 15:55:23: 67000000 INFO @ Mon, 10 Aug 2020 15:55:24: 77000000 INFO @ Mon, 10 Aug 2020 15:55:27: 72000000 INFO @ Mon, 10 Aug 2020 15:55:30: 68000000 INFO @ Mon, 10 Aug 2020 15:55:31: 78000000 INFO @ Mon, 10 Aug 2020 15:55:34: 73000000 INFO @ Mon, 10 Aug 2020 15:55:37: 69000000 INFO @ Mon, 10 Aug 2020 15:55:38: 79000000 INFO @ Mon, 10 Aug 2020 15:55:41: 74000000 INFO @ Mon, 10 Aug 2020 15:55:44: 70000000 INFO @ Mon, 10 Aug 2020 15:55:45: 80000000 INFO @ Mon, 10 Aug 2020 15:55:48: 75000000 INFO @ Mon, 10 Aug 2020 15:55:51: 71000000 INFO @ Mon, 10 Aug 2020 15:55:52: 81000000 INFO @ Mon, 10 Aug 2020 15:55:54: 76000000 INFO @ Mon, 10 Aug 2020 15:55:58: 72000000 INFO @ Mon, 10 Aug 2020 15:55:59: 82000000 INFO @ Mon, 10 Aug 2020 15:56:01: 77000000 INFO @ Mon, 10 Aug 2020 15:56:05: 73000000 INFO @ Mon, 10 Aug 2020 15:56:06: 83000000 INFO @ Mon, 10 Aug 2020 15:56:08: 78000000 INFO @ Mon, 10 Aug 2020 15:56:10: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:56:10: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:56:10: #1 total tags in treatment: 83484077 INFO @ Mon, 10 Aug 2020 15:56:10: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:56:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:56:11: #1 tags after filtering in treatment: 83484045 INFO @ Mon, 10 Aug 2020 15:56:11: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:56:11: #1 finished! INFO @ Mon, 10 Aug 2020 15:56:11: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:56:11: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:56:11: 74000000 INFO @ Mon, 10 Aug 2020 15:56:15: 79000000 INFO @ Mon, 10 Aug 2020 15:56:17: #2 number of paired peaks: 5648 INFO @ Mon, 10 Aug 2020 15:56:17: start model_add_line... INFO @ Mon, 10 Aug 2020 15:56:18: start X-correlation... INFO @ Mon, 10 Aug 2020 15:56:18: end of X-cor INFO @ Mon, 10 Aug 2020 15:56:18: #2 finished! INFO @ Mon, 10 Aug 2020 15:56:18: #2 predicted fragment length is 55 bps INFO @ Mon, 10 Aug 2020 15:56:18: #2 alternative fragment length(s) may be 55 bps INFO @ Mon, 10 Aug 2020 15:56:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.05_model.r WARNING @ Mon, 10 Aug 2020 15:56:18: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:56:18: #2 You may need to consider one of the other alternative d(s): 55 WARNING @ Mon, 10 Aug 2020 15:56:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:56:18: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:56:18: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:56:18: 75000000 INFO @ Mon, 10 Aug 2020 15:56:22: 80000000 INFO @ Mon, 10 Aug 2020 15:56:25: 76000000 INFO @ Mon, 10 Aug 2020 15:56:29: 81000000 INFO @ Mon, 10 Aug 2020 15:56:32: 77000000 INFO @ Mon, 10 Aug 2020 15:56:35: 82000000 INFO @ Mon, 10 Aug 2020 15:56:38: 78000000 INFO @ Mon, 10 Aug 2020 15:56:42: 83000000 INFO @ Mon, 10 Aug 2020 15:56:45: 79000000 INFO @ Mon, 10 Aug 2020 15:56:46: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:56:46: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:56:46: #1 total tags in treatment: 83484077 INFO @ Mon, 10 Aug 2020 15:56:46: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:56:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:56:48: #1 tags after filtering in treatment: 83484045 INFO @ Mon, 10 Aug 2020 15:56:48: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:56:48: #1 finished! INFO @ Mon, 10 Aug 2020 15:56:48: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:56:48: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:56:52: 80000000 INFO @ Mon, 10 Aug 2020 15:56:54: #2 number of paired peaks: 5648 INFO @ Mon, 10 Aug 2020 15:56:54: start model_add_line... INFO @ Mon, 10 Aug 2020 15:56:54: start X-correlation... INFO @ Mon, 10 Aug 2020 15:56:54: end of X-cor INFO @ Mon, 10 Aug 2020 15:56:54: #2 finished! INFO @ Mon, 10 Aug 2020 15:56:54: #2 predicted fragment length is 55 bps INFO @ Mon, 10 Aug 2020 15:56:54: #2 alternative fragment length(s) may be 55 bps INFO @ Mon, 10 Aug 2020 15:56:54: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.10_model.r WARNING @ Mon, 10 Aug 2020 15:56:54: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:56:54: #2 You may need to consider one of the other alternative d(s): 55 WARNING @ Mon, 10 Aug 2020 15:56:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:56:54: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:56:54: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 15:56:58: 81000000 INFO @ Mon, 10 Aug 2020 15:57:03: 82000000 INFO @ Mon, 10 Aug 2020 15:57:09: 83000000 INFO @ Mon, 10 Aug 2020 15:57:13: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 15:57:13: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 15:57:13: #1 total tags in treatment: 83484077 INFO @ Mon, 10 Aug 2020 15:57:13: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 15:57:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 15:57:14: #1 tags after filtering in treatment: 83484045 INFO @ Mon, 10 Aug 2020 15:57:14: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 15:57:14: #1 finished! INFO @ Mon, 10 Aug 2020 15:57:14: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 15:57:14: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 15:57:20: #2 number of paired peaks: 5648 INFO @ Mon, 10 Aug 2020 15:57:20: start model_add_line... INFO @ Mon, 10 Aug 2020 15:57:21: start X-correlation... INFO @ Mon, 10 Aug 2020 15:57:21: end of X-cor INFO @ Mon, 10 Aug 2020 15:57:21: #2 finished! INFO @ Mon, 10 Aug 2020 15:57:21: #2 predicted fragment length is 55 bps INFO @ Mon, 10 Aug 2020 15:57:21: #2 alternative fragment length(s) may be 55 bps INFO @ Mon, 10 Aug 2020 15:57:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.20_model.r WARNING @ Mon, 10 Aug 2020 15:57:21: #2 Since the d (55) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 15:57:21: #2 You may need to consider one of the other alternative d(s): 55 WARNING @ Mon, 10 Aug 2020 15:57:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 15:57:21: #3 Call peaks... INFO @ Mon, 10 Aug 2020 15:57:21: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 15:59:06: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 15:59:43: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 16:00:09: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 16:00:38: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.05_peaks.xls INFO @ Mon, 10 Aug 2020 16:00:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 16:00:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.05_summits.bed INFO @ Mon, 10 Aug 2020 16:00:38: Done! pass1 - making usageList (87 chroms): 2 millis pass2 - checking and writing primary data (9208 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 16:01:16: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.10_peaks.xls INFO @ Mon, 10 Aug 2020 16:01:16: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 16:01:16: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.10_summits.bed INFO @ Mon, 10 Aug 2020 16:01:16: Done! pass1 - making usageList (59 chroms): 1 millis pass2 - checking and writing primary data (3452 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 16:01:42: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.20_peaks.xls INFO @ Mon, 10 Aug 2020 16:01:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 16:01:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047624/SRX8047624.20_summits.bed INFO @ Mon, 10 Aug 2020 16:01:42: Done! pass1 - making usageList (44 chroms): 0 millis pass2 - checking and writing primary data (1183 records, 4 fields): 4 millis CompletedMACS2peakCalling