Job ID = 8184445 SRX = SRX8047589 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-08-10T03:19:27 prefetch.2.10.7: 1) Downloading 'SRR11471314'... 2020-08-10T03:19:27 prefetch.2.10.7: Downloading via HTTPS... 2020-08-10T03:27:24 prefetch.2.10.7: HTTPS download succeed 2020-08-10T03:27:24 prefetch.2.10.7: 1) 'SRR11471314' was downloaded successfully Read 64585537 spots for SRR11471314/SRR11471314.sra Written 64585537 spots for SRR11471314/SRR11471314.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:51:11 64585537 reads; of these: 64585537 (100.00%) were unpaired; of these: 1380567 (2.14%) aligned 0 times 45549677 (70.53%) aligned exactly 1 time 17655293 (27.34%) aligned >1 times 97.86% overall alignment rate Time searching: 00:51:15 Overall time: 00:51:15 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 2954803 / 63204970 = 0.0467 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:38:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:38:24: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:38:24: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:38:31: 1000000 INFO @ Mon, 10 Aug 2020 13:38:38: 2000000 INFO @ Mon, 10 Aug 2020 13:38:45: 3000000 INFO @ Mon, 10 Aug 2020 13:38:52: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:38:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:38:54: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:38:54: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:38:59: 5000000 INFO @ Mon, 10 Aug 2020 13:39:02: 1000000 INFO @ Mon, 10 Aug 2020 13:39:06: 6000000 INFO @ Mon, 10 Aug 2020 13:39:09: 2000000 INFO @ Mon, 10 Aug 2020 13:39:14: 7000000 INFO @ Mon, 10 Aug 2020 13:39:17: 3000000 INFO @ Mon, 10 Aug 2020 13:39:21: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Mon, 10 Aug 2020 13:39:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 10 Aug 2020 13:39:24: #1 read tag files... INFO @ Mon, 10 Aug 2020 13:39:24: #1 read treatment tags... INFO @ Mon, 10 Aug 2020 13:39:24: 4000000 INFO @ Mon, 10 Aug 2020 13:39:29: 9000000 INFO @ Mon, 10 Aug 2020 13:39:32: 1000000 INFO @ Mon, 10 Aug 2020 13:39:32: 5000000 INFO @ Mon, 10 Aug 2020 13:39:37: 10000000 INFO @ Mon, 10 Aug 2020 13:39:39: 6000000 INFO @ Mon, 10 Aug 2020 13:39:40: 2000000 INFO @ Mon, 10 Aug 2020 13:39:44: 11000000 INFO @ Mon, 10 Aug 2020 13:39:47: 7000000 INFO @ Mon, 10 Aug 2020 13:39:47: 3000000 INFO @ Mon, 10 Aug 2020 13:39:52: 12000000 INFO @ Mon, 10 Aug 2020 13:39:55: 8000000 INFO @ Mon, 10 Aug 2020 13:39:55: 4000000 INFO @ Mon, 10 Aug 2020 13:40:00: 13000000 INFO @ Mon, 10 Aug 2020 13:40:02: 9000000 INFO @ Mon, 10 Aug 2020 13:40:02: 5000000 INFO @ Mon, 10 Aug 2020 13:40:07: 14000000 INFO @ Mon, 10 Aug 2020 13:40:10: 10000000 INFO @ Mon, 10 Aug 2020 13:40:10: 6000000 INFO @ Mon, 10 Aug 2020 13:40:15: 15000000 INFO @ Mon, 10 Aug 2020 13:40:18: 11000000 INFO @ Mon, 10 Aug 2020 13:40:18: 7000000 INFO @ Mon, 10 Aug 2020 13:40:23: 16000000 INFO @ Mon, 10 Aug 2020 13:40:25: 12000000 INFO @ Mon, 10 Aug 2020 13:40:25: 8000000 INFO @ Mon, 10 Aug 2020 13:40:30: 17000000 INFO @ Mon, 10 Aug 2020 13:40:33: 13000000 INFO @ Mon, 10 Aug 2020 13:40:33: 9000000 INFO @ Mon, 10 Aug 2020 13:40:38: 18000000 INFO @ Mon, 10 Aug 2020 13:40:40: 14000000 INFO @ Mon, 10 Aug 2020 13:40:41: 10000000 INFO @ Mon, 10 Aug 2020 13:40:46: 19000000 INFO @ Mon, 10 Aug 2020 13:40:48: 15000000 INFO @ Mon, 10 Aug 2020 13:40:48: 11000000 INFO @ Mon, 10 Aug 2020 13:40:53: 20000000 INFO @ Mon, 10 Aug 2020 13:40:56: 16000000 INFO @ Mon, 10 Aug 2020 13:40:56: 12000000 INFO @ Mon, 10 Aug 2020 13:41:01: 21000000 INFO @ Mon, 10 Aug 2020 13:41:03: 17000000 INFO @ Mon, 10 Aug 2020 13:41:04: 13000000 INFO @ Mon, 10 Aug 2020 13:41:08: 22000000 INFO @ Mon, 10 Aug 2020 13:41:11: 18000000 INFO @ Mon, 10 Aug 2020 13:41:11: 14000000 INFO @ Mon, 10 Aug 2020 13:41:16: 23000000 INFO @ Mon, 10 Aug 2020 13:41:18: 19000000 INFO @ Mon, 10 Aug 2020 13:41:19: 15000000 INFO @ Mon, 10 Aug 2020 13:41:24: 24000000 INFO @ Mon, 10 Aug 2020 13:41:26: 20000000 INFO @ Mon, 10 Aug 2020 13:41:26: 16000000 INFO @ Mon, 10 Aug 2020 13:41:31: 25000000 INFO @ Mon, 10 Aug 2020 13:41:34: 21000000 INFO @ Mon, 10 Aug 2020 13:41:34: 17000000 INFO @ Mon, 10 Aug 2020 13:41:39: 26000000 INFO @ Mon, 10 Aug 2020 13:41:41: 22000000 INFO @ Mon, 10 Aug 2020 13:41:42: 18000000 INFO @ Mon, 10 Aug 2020 13:41:47: 27000000 INFO @ Mon, 10 Aug 2020 13:41:49: 23000000 INFO @ Mon, 10 Aug 2020 13:41:49: 19000000 INFO @ Mon, 10 Aug 2020 13:41:54: 28000000 INFO @ Mon, 10 Aug 2020 13:41:57: 24000000 INFO @ Mon, 10 Aug 2020 13:41:57: 20000000 INFO @ Mon, 10 Aug 2020 13:42:02: 29000000 INFO @ Mon, 10 Aug 2020 13:42:04: 25000000 INFO @ Mon, 10 Aug 2020 13:42:05: 21000000 INFO @ Mon, 10 Aug 2020 13:42:10: 30000000 INFO @ Mon, 10 Aug 2020 13:42:12: 26000000 INFO @ Mon, 10 Aug 2020 13:42:12: 22000000 INFO @ Mon, 10 Aug 2020 13:42:17: 31000000 INFO @ Mon, 10 Aug 2020 13:42:19: 27000000 INFO @ Mon, 10 Aug 2020 13:42:20: 23000000 INFO @ Mon, 10 Aug 2020 13:42:25: 32000000 INFO @ Mon, 10 Aug 2020 13:42:27: 28000000 INFO @ Mon, 10 Aug 2020 13:42:28: 24000000 INFO @ Mon, 10 Aug 2020 13:42:33: 33000000 INFO @ Mon, 10 Aug 2020 13:42:35: 29000000 INFO @ Mon, 10 Aug 2020 13:42:35: 25000000 INFO @ Mon, 10 Aug 2020 13:42:40: 34000000 INFO @ Mon, 10 Aug 2020 13:42:42: 30000000 INFO @ Mon, 10 Aug 2020 13:42:43: 26000000 INFO @ Mon, 10 Aug 2020 13:42:48: 35000000 INFO @ Mon, 10 Aug 2020 13:42:50: 31000000 INFO @ Mon, 10 Aug 2020 13:42:50: 27000000 INFO @ Mon, 10 Aug 2020 13:42:56: 36000000 INFO @ Mon, 10 Aug 2020 13:42:57: 32000000 INFO @ Mon, 10 Aug 2020 13:42:58: 28000000 INFO @ Mon, 10 Aug 2020 13:43:03: 37000000 INFO @ Mon, 10 Aug 2020 13:43:05: 33000000 INFO @ Mon, 10 Aug 2020 13:43:06: 29000000 INFO @ Mon, 10 Aug 2020 13:43:11: 38000000 INFO @ Mon, 10 Aug 2020 13:43:13: 34000000 INFO @ Mon, 10 Aug 2020 13:43:13: 30000000 INFO @ Mon, 10 Aug 2020 13:43:19: 39000000 INFO @ Mon, 10 Aug 2020 13:43:20: 35000000 INFO @ Mon, 10 Aug 2020 13:43:21: 31000000 INFO @ Mon, 10 Aug 2020 13:43:26: 40000000 INFO @ Mon, 10 Aug 2020 13:43:28: 36000000 INFO @ Mon, 10 Aug 2020 13:43:29: 32000000 INFO @ Mon, 10 Aug 2020 13:43:34: 41000000 INFO @ Mon, 10 Aug 2020 13:43:35: 37000000 INFO @ Mon, 10 Aug 2020 13:43:36: 33000000 INFO @ Mon, 10 Aug 2020 13:43:41: 42000000 INFO @ Mon, 10 Aug 2020 13:43:43: 38000000 INFO @ Mon, 10 Aug 2020 13:43:44: 34000000 INFO @ Mon, 10 Aug 2020 13:43:49: 43000000 INFO @ Mon, 10 Aug 2020 13:43:51: 39000000 INFO @ Mon, 10 Aug 2020 13:43:52: 35000000 INFO @ Mon, 10 Aug 2020 13:43:57: 44000000 INFO @ Mon, 10 Aug 2020 13:43:58: 40000000 INFO @ Mon, 10 Aug 2020 13:43:59: 36000000 INFO @ Mon, 10 Aug 2020 13:44:04: 45000000 INFO @ Mon, 10 Aug 2020 13:44:06: 41000000 INFO @ Mon, 10 Aug 2020 13:44:07: 37000000 INFO @ Mon, 10 Aug 2020 13:44:12: 46000000 INFO @ Mon, 10 Aug 2020 13:44:14: 42000000 INFO @ Mon, 10 Aug 2020 13:44:15: 38000000 INFO @ Mon, 10 Aug 2020 13:44:20: 47000000 INFO @ Mon, 10 Aug 2020 13:44:21: 43000000 INFO @ Mon, 10 Aug 2020 13:44:22: 39000000 INFO @ Mon, 10 Aug 2020 13:44:28: 48000000 INFO @ Mon, 10 Aug 2020 13:44:29: 44000000 INFO @ Mon, 10 Aug 2020 13:44:30: 40000000 INFO @ Mon, 10 Aug 2020 13:44:35: 49000000 INFO @ Mon, 10 Aug 2020 13:44:37: 45000000 INFO @ Mon, 10 Aug 2020 13:44:38: 41000000 INFO @ Mon, 10 Aug 2020 13:44:43: 50000000 INFO @ Mon, 10 Aug 2020 13:44:45: 46000000 INFO @ Mon, 10 Aug 2020 13:44:45: 42000000 INFO @ Mon, 10 Aug 2020 13:44:51: 51000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 10 Aug 2020 13:44:52: 47000000 INFO @ Mon, 10 Aug 2020 13:44:53: 43000000 INFO @ Mon, 10 Aug 2020 13:44:59: 52000000 INFO @ Mon, 10 Aug 2020 13:45:00: 48000000 INFO @ Mon, 10 Aug 2020 13:45:01: 44000000 INFO @ Mon, 10 Aug 2020 13:45:07: 53000000 INFO @ Mon, 10 Aug 2020 13:45:08: 49000000 INFO @ Mon, 10 Aug 2020 13:45:08: 45000000 INFO @ Mon, 10 Aug 2020 13:45:14: 54000000 INFO @ Mon, 10 Aug 2020 13:45:16: 50000000 INFO @ Mon, 10 Aug 2020 13:45:16: 46000000 INFO @ Mon, 10 Aug 2020 13:45:22: 55000000 INFO @ Mon, 10 Aug 2020 13:45:23: 51000000 INFO @ Mon, 10 Aug 2020 13:45:24: 47000000 INFO @ Mon, 10 Aug 2020 13:45:30: 56000000 INFO @ Mon, 10 Aug 2020 13:45:31: 52000000 INFO @ Mon, 10 Aug 2020 13:45:32: 48000000 INFO @ Mon, 10 Aug 2020 13:45:38: 57000000 INFO @ Mon, 10 Aug 2020 13:45:39: 53000000 INFO @ Mon, 10 Aug 2020 13:45:39: 49000000 INFO @ Mon, 10 Aug 2020 13:45:46: 58000000 INFO @ Mon, 10 Aug 2020 13:45:47: 54000000 INFO @ Mon, 10 Aug 2020 13:45:47: 50000000 INFO @ Mon, 10 Aug 2020 13:45:53: 59000000 INFO @ Mon, 10 Aug 2020 13:45:54: 55000000 INFO @ Mon, 10 Aug 2020 13:45:55: 51000000 INFO @ Mon, 10 Aug 2020 13:46:01: 60000000 INFO @ Mon, 10 Aug 2020 13:46:02: 56000000 INFO @ Mon, 10 Aug 2020 13:46:02: 52000000 INFO @ Mon, 10 Aug 2020 13:46:04: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:46:04: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:46:04: #1 total tags in treatment: 60250167 INFO @ Mon, 10 Aug 2020 13:46:04: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:46:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:46:05: #1 tags after filtering in treatment: 60250117 INFO @ Mon, 10 Aug 2020 13:46:05: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:46:05: #1 finished! INFO @ Mon, 10 Aug 2020 13:46:05: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:46:05: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:46:09: #2 number of paired peaks: 5269 INFO @ Mon, 10 Aug 2020 13:46:09: start model_add_line... INFO @ Mon, 10 Aug 2020 13:46:10: start X-correlation... INFO @ Mon, 10 Aug 2020 13:46:10: 57000000 INFO @ Mon, 10 Aug 2020 13:46:10: end of X-cor INFO @ Mon, 10 Aug 2020 13:46:10: #2 finished! INFO @ Mon, 10 Aug 2020 13:46:10: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:46:10: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:46:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.05_model.r WARNING @ Mon, 10 Aug 2020 13:46:10: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:46:10: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:46:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:46:10: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:46:10: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:46:10: 53000000 INFO @ Mon, 10 Aug 2020 13:46:18: 58000000 INFO @ Mon, 10 Aug 2020 13:46:18: 54000000 INFO @ Mon, 10 Aug 2020 13:46:25: 59000000 INFO @ Mon, 10 Aug 2020 13:46:25: 55000000 INFO @ Mon, 10 Aug 2020 13:46:33: 60000000 INFO @ Mon, 10 Aug 2020 13:46:33: 56000000 INFO @ Mon, 10 Aug 2020 13:46:35: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:46:35: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:46:35: #1 total tags in treatment: 60250167 INFO @ Mon, 10 Aug 2020 13:46:35: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:46:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:46:36: #1 tags after filtering in treatment: 60250117 INFO @ Mon, 10 Aug 2020 13:46:36: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:46:36: #1 finished! INFO @ Mon, 10 Aug 2020 13:46:36: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:46:36: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:46:40: 57000000 INFO @ Mon, 10 Aug 2020 13:46:41: #2 number of paired peaks: 5269 INFO @ Mon, 10 Aug 2020 13:46:41: start model_add_line... INFO @ Mon, 10 Aug 2020 13:46:42: start X-correlation... INFO @ Mon, 10 Aug 2020 13:46:42: end of X-cor INFO @ Mon, 10 Aug 2020 13:46:42: #2 finished! INFO @ Mon, 10 Aug 2020 13:46:42: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:46:42: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:46:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.10_model.r WARNING @ Mon, 10 Aug 2020 13:46:42: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:46:42: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:46:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:46:42: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:46:42: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 10 Aug 2020 13:46:47: 58000000 INFO @ Mon, 10 Aug 2020 13:46:54: 59000000 INFO @ Mon, 10 Aug 2020 13:47:01: 60000000 INFO @ Mon, 10 Aug 2020 13:47:03: #1 tag size is determined as 50 bps INFO @ Mon, 10 Aug 2020 13:47:03: #1 tag size = 50 INFO @ Mon, 10 Aug 2020 13:47:03: #1 total tags in treatment: 60250167 INFO @ Mon, 10 Aug 2020 13:47:03: #1 user defined the maximum tags... INFO @ Mon, 10 Aug 2020 13:47:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 10 Aug 2020 13:47:04: #1 tags after filtering in treatment: 60250117 INFO @ Mon, 10 Aug 2020 13:47:04: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 10 Aug 2020 13:47:04: #1 finished! INFO @ Mon, 10 Aug 2020 13:47:04: #2 Build Peak Model... INFO @ Mon, 10 Aug 2020 13:47:04: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 10 Aug 2020 13:47:09: #2 number of paired peaks: 5269 INFO @ Mon, 10 Aug 2020 13:47:09: start model_add_line... INFO @ Mon, 10 Aug 2020 13:47:10: start X-correlation... INFO @ Mon, 10 Aug 2020 13:47:10: end of X-cor INFO @ Mon, 10 Aug 2020 13:47:10: #2 finished! INFO @ Mon, 10 Aug 2020 13:47:10: #2 predicted fragment length is 52 bps INFO @ Mon, 10 Aug 2020 13:47:10: #2 alternative fragment length(s) may be 52 bps INFO @ Mon, 10 Aug 2020 13:47:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.20_model.r WARNING @ Mon, 10 Aug 2020 13:47:10: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 10 Aug 2020 13:47:10: #2 You may need to consider one of the other alternative d(s): 52 WARNING @ Mon, 10 Aug 2020 13:47:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 10 Aug 2020 13:47:10: #3 Call peaks... INFO @ Mon, 10 Aug 2020 13:47:10: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Mon, 10 Aug 2020 13:48:14: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:48:47: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:49:14: #3 Call peaks for each chromosome... INFO @ Mon, 10 Aug 2020 13:49:21: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.05_peaks.xls INFO @ Mon, 10 Aug 2020 13:49:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.05_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:49:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.05_summits.bed INFO @ Mon, 10 Aug 2020 13:49:21: Done! pass1 - making usageList (63 chroms): 1 millis pass2 - checking and writing primary data (3691 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:49:53: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.10_peaks.xls INFO @ Mon, 10 Aug 2020 13:49:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.10_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:49:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.10_summits.bed INFO @ Mon, 10 Aug 2020 13:49:53: Done! pass1 - making usageList (53 chroms): 1 millis pass2 - checking and writing primary data (1775 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Mon, 10 Aug 2020 13:50:20: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.20_peaks.xls INFO @ Mon, 10 Aug 2020 13:50:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.20_peaks.narrowPeak INFO @ Mon, 10 Aug 2020 13:50:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX8047589/SRX8047589.20_summits.bed INFO @ Mon, 10 Aug 2020 13:50:20: Done! pass1 - making usageList (40 chroms): 0 millis pass2 - checking and writing primary data (785 records, 4 fields): 3 millis CompletedMACS2peakCalling