Job ID = 2003647 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-05T04:15:02 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 76,948,093 reads read : 76,948,093 reads written : 76,948,093 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:40:48 76948093 reads; of these: 76948093 (100.00%) were unpaired; of these: 3417581 (4.44%) aligned 0 times 52040757 (67.63%) aligned exactly 1 time 21489755 (27.93%) aligned >1 times 95.56% overall alignment rate Time searching: 00:40:49 Overall time: 00:40:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 20 files... [bam_rmdupse_core] 4182792 / 73530512 = 0.0569 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 14:24:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 14:24:15: #1 read tag files... INFO @ Fri, 05 Jul 2019 14:24:15: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 14:24:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 14:24:16: #1 read tag files... INFO @ Fri, 05 Jul 2019 14:24:16: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 14:24:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 14:24:17: #1 read tag files... INFO @ Fri, 05 Jul 2019 14:24:17: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 14:24:25: 1000000 INFO @ Fri, 05 Jul 2019 14:24:25: 1000000 INFO @ Fri, 05 Jul 2019 14:24:27: 1000000 INFO @ Fri, 05 Jul 2019 14:24:34: 2000000 INFO @ Fri, 05 Jul 2019 14:24:35: 2000000 INFO @ Fri, 05 Jul 2019 14:24:37: 2000000 INFO @ Fri, 05 Jul 2019 14:24:44: 3000000 INFO @ Fri, 05 Jul 2019 14:24:45: 3000000 INFO @ Fri, 05 Jul 2019 14:24:46: 3000000 INFO @ Fri, 05 Jul 2019 14:24:52: 4000000 INFO @ Fri, 05 Jul 2019 14:24:56: 4000000 INFO @ Fri, 05 Jul 2019 14:24:57: 4000000 INFO @ Fri, 05 Jul 2019 14:25:01: 5000000 INFO @ Fri, 05 Jul 2019 14:25:06: 5000000 INFO @ Fri, 05 Jul 2019 14:25:07: 5000000 INFO @ Fri, 05 Jul 2019 14:25:10: 6000000 INFO @ Fri, 05 Jul 2019 14:25:16: 6000000 INFO @ Fri, 05 Jul 2019 14:25:17: 6000000 INFO @ Fri, 05 Jul 2019 14:25:19: 7000000 INFO @ Fri, 05 Jul 2019 14:25:25: 7000000 INFO @ Fri, 05 Jul 2019 14:25:28: 7000000 INFO @ Fri, 05 Jul 2019 14:25:29: 8000000 INFO @ Fri, 05 Jul 2019 14:25:34: 8000000 INFO @ Fri, 05 Jul 2019 14:25:38: 8000000 INFO @ Fri, 05 Jul 2019 14:25:38: 9000000 INFO @ Fri, 05 Jul 2019 14:25:44: 9000000 INFO @ Fri, 05 Jul 2019 14:25:48: 10000000 INFO @ Fri, 05 Jul 2019 14:25:48: 9000000 INFO @ Fri, 05 Jul 2019 14:25:53: 10000000 INFO @ Fri, 05 Jul 2019 14:25:57: 11000000 INFO @ Fri, 05 Jul 2019 14:25:58: 10000000 INFO @ Fri, 05 Jul 2019 14:26:03: 11000000 INFO @ Fri, 05 Jul 2019 14:26:05: 12000000 INFO @ Fri, 05 Jul 2019 14:26:08: 11000000 INFO @ Fri, 05 Jul 2019 14:26:12: 12000000 INFO @ Fri, 05 Jul 2019 14:26:14: 13000000 INFO @ Fri, 05 Jul 2019 14:26:18: 12000000 INFO @ Fri, 05 Jul 2019 14:26:21: 13000000 INFO @ Fri, 05 Jul 2019 14:26:23: 14000000 INFO @ Fri, 05 Jul 2019 14:26:27: 13000000 INFO @ Fri, 05 Jul 2019 14:26:31: 14000000 INFO @ Fri, 05 Jul 2019 14:26:31: 15000000 INFO @ Fri, 05 Jul 2019 14:26:37: 14000000 INFO @ Fri, 05 Jul 2019 14:26:40: 16000000 INFO @ Fri, 05 Jul 2019 14:26:40: 15000000 INFO @ Fri, 05 Jul 2019 14:26:47: 15000000 INFO @ Fri, 05 Jul 2019 14:26:49: 17000000 INFO @ Fri, 05 Jul 2019 14:26:49: 16000000 INFO @ Fri, 05 Jul 2019 14:26:57: 16000000 INFO @ Fri, 05 Jul 2019 14:26:57: 18000000 INFO @ Fri, 05 Jul 2019 14:26:59: 17000000 INFO @ Fri, 05 Jul 2019 14:27:06: 19000000 INFO @ Fri, 05 Jul 2019 14:27:06: 17000000 INFO @ Fri, 05 Jul 2019 14:27:08: 18000000 INFO @ Fri, 05 Jul 2019 14:27:15: 20000000 INFO @ Fri, 05 Jul 2019 14:27:16: 18000000 INFO @ Fri, 05 Jul 2019 14:27:18: 19000000 INFO @ Fri, 05 Jul 2019 14:27:24: 21000000 INFO @ Fri, 05 Jul 2019 14:27:26: 19000000 INFO @ Fri, 05 Jul 2019 14:27:27: 20000000 INFO @ Fri, 05 Jul 2019 14:27:32: 22000000 INFO @ Fri, 05 Jul 2019 14:27:36: 20000000 INFO @ Fri, 05 Jul 2019 14:27:36: 21000000 INFO @ Fri, 05 Jul 2019 14:27:41: 23000000 INFO @ Fri, 05 Jul 2019 14:27:45: 21000000 INFO @ Fri, 05 Jul 2019 14:27:46: 22000000 INFO @ Fri, 05 Jul 2019 14:27:50: 24000000 INFO @ Fri, 05 Jul 2019 14:27:55: 23000000 INFO @ Fri, 05 Jul 2019 14:27:55: 22000000 INFO @ Fri, 05 Jul 2019 14:27:58: 25000000 INFO @ Fri, 05 Jul 2019 14:28:04: 24000000 INFO @ Fri, 05 Jul 2019 14:28:05: 23000000 INFO @ Fri, 05 Jul 2019 14:28:07: 26000000 INFO @ Fri, 05 Jul 2019 14:28:14: 25000000 INFO @ Fri, 05 Jul 2019 14:28:15: 24000000 INFO @ Fri, 05 Jul 2019 14:28:16: 27000000 INFO @ Fri, 05 Jul 2019 14:28:23: 26000000 INFO @ Fri, 05 Jul 2019 14:28:24: 28000000 INFO @ Fri, 05 Jul 2019 14:28:25: 25000000 INFO @ Fri, 05 Jul 2019 14:28:32: 27000000 INFO @ Fri, 05 Jul 2019 14:28:33: 29000000 INFO @ Fri, 05 Jul 2019 14:28:34: 26000000 INFO @ Fri, 05 Jul 2019 14:28:42: 28000000 INFO @ Fri, 05 Jul 2019 14:28:42: 30000000 INFO @ Fri, 05 Jul 2019 14:28:44: 27000000 INFO @ Fri, 05 Jul 2019 14:28:50: 31000000 INFO @ Fri, 05 Jul 2019 14:28:51: 29000000 INFO @ Fri, 05 Jul 2019 14:28:54: 28000000 INFO @ Fri, 05 Jul 2019 14:28:59: 32000000 INFO @ Fri, 05 Jul 2019 14:29:00: 30000000 INFO @ Fri, 05 Jul 2019 14:29:04: 29000000 INFO @ Fri, 05 Jul 2019 14:29:07: 33000000 INFO @ Fri, 05 Jul 2019 14:29:10: 31000000 INFO @ Fri, 05 Jul 2019 14:29:14: 30000000 INFO @ Fri, 05 Jul 2019 14:29:16: 34000000 INFO @ Fri, 05 Jul 2019 14:29:19: 32000000 INFO @ Fri, 05 Jul 2019 14:29:23: 31000000 INFO @ Fri, 05 Jul 2019 14:29:24: 35000000 INFO @ Fri, 05 Jul 2019 14:29:28: 33000000 INFO @ Fri, 05 Jul 2019 14:29:33: 36000000 INFO @ Fri, 05 Jul 2019 14:29:33: 32000000 INFO @ Fri, 05 Jul 2019 14:29:37: 34000000 INFO @ Fri, 05 Jul 2019 14:29:41: 37000000 INFO @ Fri, 05 Jul 2019 14:29:43: 33000000 INFO @ Fri, 05 Jul 2019 14:29:46: 35000000 INFO @ Fri, 05 Jul 2019 14:29:49: 38000000 INFO @ Fri, 05 Jul 2019 14:29:53: 34000000 INFO @ Fri, 05 Jul 2019 14:29:56: 36000000 INFO @ Fri, 05 Jul 2019 14:29:57: 39000000 INFO @ Fri, 05 Jul 2019 14:30:02: 35000000 INFO @ Fri, 05 Jul 2019 14:30:05: 37000000 INFO @ Fri, 05 Jul 2019 14:30:05: 40000000 INFO @ Fri, 05 Jul 2019 14:30:12: 36000000 INFO @ Fri, 05 Jul 2019 14:30:14: 38000000 INFO @ Fri, 05 Jul 2019 14:30:14: 41000000 INFO @ Fri, 05 Jul 2019 14:30:22: 37000000 INFO @ Fri, 05 Jul 2019 14:30:22: 42000000 INFO @ Fri, 05 Jul 2019 14:30:23: 39000000 INFO @ Fri, 05 Jul 2019 14:30:31: 43000000 INFO @ Fri, 05 Jul 2019 14:30:31: 38000000 INFO @ Fri, 05 Jul 2019 14:30:32: 40000000 INFO @ Fri, 05 Jul 2019 14:30:39: 44000000 INFO @ Fri, 05 Jul 2019 14:30:41: 41000000 INFO @ Fri, 05 Jul 2019 14:30:41: 39000000 INFO @ Fri, 05 Jul 2019 14:30:47: 45000000 INFO @ Fri, 05 Jul 2019 14:30:50: 42000000 INFO @ Fri, 05 Jul 2019 14:30:51: 40000000 INFO @ Fri, 05 Jul 2019 14:30:55: 46000000 INFO @ Fri, 05 Jul 2019 14:30:59: 43000000 INFO @ Fri, 05 Jul 2019 14:31:00: 41000000 INFO @ Fri, 05 Jul 2019 14:31:03: 47000000 INFO @ Fri, 05 Jul 2019 14:31:08: 44000000 INFO @ Fri, 05 Jul 2019 14:31:10: 42000000 INFO @ Fri, 05 Jul 2019 14:31:11: 48000000 INFO @ Fri, 05 Jul 2019 14:31:17: 45000000 INFO @ Fri, 05 Jul 2019 14:31:20: 43000000 INFO @ Fri, 05 Jul 2019 14:31:20: 49000000 INFO @ Fri, 05 Jul 2019 14:31:26: 46000000 INFO @ Fri, 05 Jul 2019 14:31:31: 50000000 INFO @ Fri, 05 Jul 2019 14:31:32: 44000000 INFO @ Fri, 05 Jul 2019 14:31:35: 47000000 INFO @ Fri, 05 Jul 2019 14:31:39: 51000000 INFO @ Fri, 05 Jul 2019 14:31:42: 45000000 INFO @ Fri, 05 Jul 2019 14:31:44: 48000000 INFO @ Fri, 05 Jul 2019 14:31:48: 52000000 INFO @ Fri, 05 Jul 2019 14:31:51: 46000000 INFO @ Fri, 05 Jul 2019 14:31:53: 49000000 INFO @ Fri, 05 Jul 2019 14:31:56: 53000000 INFO @ Fri, 05 Jul 2019 14:32:00: 47000000 INFO @ Fri, 05 Jul 2019 14:32:02: 50000000 INFO @ Fri, 05 Jul 2019 14:32:04: 54000000 INFO @ Fri, 05 Jul 2019 14:32:09: 48000000 INFO @ Fri, 05 Jul 2019 14:32:11: 51000000 INFO @ Fri, 05 Jul 2019 14:32:13: 55000000 INFO @ Fri, 05 Jul 2019 14:32:19: 49000000 INFO @ Fri, 05 Jul 2019 14:32:20: 52000000 INFO @ Fri, 05 Jul 2019 14:32:21: 56000000 INFO @ Fri, 05 Jul 2019 14:32:28: 50000000 INFO @ Fri, 05 Jul 2019 14:32:29: 57000000 INFO @ Fri, 05 Jul 2019 14:32:29: 53000000 INFO @ Fri, 05 Jul 2019 14:32:37: 58000000 INFO @ Fri, 05 Jul 2019 14:32:37: 51000000 INFO @ Fri, 05 Jul 2019 14:32:39: 54000000 INFO @ Fri, 05 Jul 2019 14:32:46: 59000000 INFO @ Fri, 05 Jul 2019 14:32:46: 52000000 INFO @ Fri, 05 Jul 2019 14:32:48: 55000000 INFO @ Fri, 05 Jul 2019 14:32:54: 60000000 INFO @ Fri, 05 Jul 2019 14:32:56: 53000000 INFO @ Fri, 05 Jul 2019 14:32:57: 56000000 INFO @ Fri, 05 Jul 2019 14:33:02: 61000000 INFO @ Fri, 05 Jul 2019 14:33:05: 54000000 INFO @ Fri, 05 Jul 2019 14:33:06: 57000000 INFO @ Fri, 05 Jul 2019 14:33:11: 62000000 INFO @ Fri, 05 Jul 2019 14:33:14: 55000000 INFO @ Fri, 05 Jul 2019 14:33:15: 58000000 INFO @ Fri, 05 Jul 2019 14:33:19: 63000000 INFO @ Fri, 05 Jul 2019 14:33:23: 56000000 INFO @ Fri, 05 Jul 2019 14:33:23: 59000000 INFO @ Fri, 05 Jul 2019 14:33:28: 64000000 INFO @ Fri, 05 Jul 2019 14:33:32: 57000000 INFO @ Fri, 05 Jul 2019 14:33:32: 60000000 INFO @ Fri, 05 Jul 2019 14:33:36: 65000000 INFO @ Fri, 05 Jul 2019 14:33:41: 58000000 INFO @ Fri, 05 Jul 2019 14:33:42: 61000000 INFO @ Fri, 05 Jul 2019 14:33:45: 66000000 INFO @ Fri, 05 Jul 2019 14:33:50: 59000000 INFO @ Fri, 05 Jul 2019 14:33:50: 62000000 INFO @ Fri, 05 Jul 2019 14:33:53: 67000000 INFO @ Fri, 05 Jul 2019 14:33:59: 60000000 INFO @ Fri, 05 Jul 2019 14:33:59: 63000000 INFO @ Fri, 05 Jul 2019 14:34:02: 68000000 INFO @ Fri, 05 Jul 2019 14:34:08: 64000000 INFO @ Fri, 05 Jul 2019 14:34:09: 61000000 INFO @ Fri, 05 Jul 2019 14:34:10: 69000000 INFO @ Fri, 05 Jul 2019 14:34:16: #1 tag size is determined as 40 bps INFO @ Fri, 05 Jul 2019 14:34:16: #1 tag size = 40 INFO @ Fri, 05 Jul 2019 14:34:16: #1 total tags in treatment: 69347720 INFO @ Fri, 05 Jul 2019 14:34:16: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 14:34:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 14:34:17: 65000000 INFO @ Fri, 05 Jul 2019 14:34:18: 62000000 INFO @ Fri, 05 Jul 2019 14:34:18: #1 tags after filtering in treatment: 69347686 INFO @ Fri, 05 Jul 2019 14:34:18: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 14:34:18: #1 finished! INFO @ Fri, 05 Jul 2019 14:34:18: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 14:34:18: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 14:34:25: #2 number of paired peaks: 5072 INFO @ Fri, 05 Jul 2019 14:34:27: 66000000 INFO @ Fri, 05 Jul 2019 14:34:27: 63000000 INFO @ Fri, 05 Jul 2019 14:34:28: start model_add_line... INFO @ Fri, 05 Jul 2019 14:34:28: start X-correlation... INFO @ Fri, 05 Jul 2019 14:34:28: end of X-cor INFO @ Fri, 05 Jul 2019 14:34:28: #2 finished! INFO @ Fri, 05 Jul 2019 14:34:28: #2 predicted fragment length is 41 bps INFO @ Fri, 05 Jul 2019 14:34:28: #2 alternative fragment length(s) may be 41 bps INFO @ Fri, 05 Jul 2019 14:34:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.10_model.r WARNING @ Fri, 05 Jul 2019 14:34:28: #2 Since the d (41) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 14:34:28: #2 You may need to consider one of the other alternative d(s): 41 WARNING @ Fri, 05 Jul 2019 14:34:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 14:34:28: #3 Call peaks... INFO @ Fri, 05 Jul 2019 14:34:28: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 14:34:37: 67000000 INFO @ Fri, 05 Jul 2019 14:34:37: 64000000 INFO @ Fri, 05 Jul 2019 14:34:46: 68000000 INFO @ Fri, 05 Jul 2019 14:34:46: 65000000 INFO @ Fri, 05 Jul 2019 14:34:55: 69000000 INFO @ Fri, 05 Jul 2019 14:34:56: 66000000 INFO @ Fri, 05 Jul 2019 14:34:58: #1 tag size is determined as 40 bps INFO @ Fri, 05 Jul 2019 14:34:58: #1 tag size = 40 INFO @ Fri, 05 Jul 2019 14:34:58: #1 total tags in treatment: 69347720 INFO @ Fri, 05 Jul 2019 14:34:58: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 14:34:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 14:35:00: #1 tags after filtering in treatment: 69347686 INFO @ Fri, 05 Jul 2019 14:35:00: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 14:35:00: #1 finished! INFO @ Fri, 05 Jul 2019 14:35:00: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 14:35:00: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 14:35:05: 67000000 INFO @ Fri, 05 Jul 2019 14:35:08: #2 number of paired peaks: 5072 INFO @ Fri, 05 Jul 2019 14:35:08: start model_add_line... INFO @ Fri, 05 Jul 2019 14:35:09: start X-correlation... INFO @ Fri, 05 Jul 2019 14:35:09: end of X-cor INFO @ Fri, 05 Jul 2019 14:35:09: #2 finished! INFO @ Fri, 05 Jul 2019 14:35:09: #2 predicted fragment length is 41 bps INFO @ Fri, 05 Jul 2019 14:35:09: #2 alternative fragment length(s) may be 41 bps INFO @ Fri, 05 Jul 2019 14:35:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.20_model.r WARNING @ Fri, 05 Jul 2019 14:35:09: #2 Since the d (41) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 14:35:09: #2 You may need to consider one of the other alternative d(s): 41 WARNING @ Fri, 05 Jul 2019 14:35:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 14:35:09: #3 Call peaks... INFO @ Fri, 05 Jul 2019 14:35:09: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 14:35:14: 68000000 INFO @ Fri, 05 Jul 2019 14:35:23: 69000000 INFO @ Fri, 05 Jul 2019 14:35:27: #1 tag size is determined as 40 bps INFO @ Fri, 05 Jul 2019 14:35:27: #1 tag size = 40 INFO @ Fri, 05 Jul 2019 14:35:27: #1 total tags in treatment: 69347720 INFO @ Fri, 05 Jul 2019 14:35:27: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 14:35:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 14:35:28: #1 tags after filtering in treatment: 69347686 INFO @ Fri, 05 Jul 2019 14:35:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 14:35:28: #1 finished! INFO @ Fri, 05 Jul 2019 14:35:28: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 14:35:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 14:35:36: #2 number of paired peaks: 5072 INFO @ Fri, 05 Jul 2019 14:35:36: start model_add_line... INFO @ Fri, 05 Jul 2019 14:35:37: start X-correlation... INFO @ Fri, 05 Jul 2019 14:35:37: end of X-cor INFO @ Fri, 05 Jul 2019 14:35:37: #2 finished! INFO @ Fri, 05 Jul 2019 14:35:37: #2 predicted fragment length is 41 bps INFO @ Fri, 05 Jul 2019 14:35:37: #2 alternative fragment length(s) may be 41 bps INFO @ Fri, 05 Jul 2019 14:35:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.05_model.r WARNING @ Fri, 05 Jul 2019 14:35:37: #2 Since the d (41) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 05 Jul 2019 14:35:37: #2 You may need to consider one of the other alternative d(s): 41 WARNING @ Fri, 05 Jul 2019 14:35:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 05 Jul 2019 14:35:37: #3 Call peaks... INFO @ Fri, 05 Jul 2019 14:35:37: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 14:38:10: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 14:38:55: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 14:39:17: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 14:40:02: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.10_peaks.xls INFO @ Fri, 05 Jul 2019 14:40:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 14:40:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.10_summits.bed INFO @ Fri, 05 Jul 2019 14:40:03: Done! pass1 - making usageList (51 chroms): 2 millis pass2 - checking and writing primary data (1649 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 14:40:51: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.20_peaks.xls INFO @ Fri, 05 Jul 2019 14:40:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 14:40:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.20_summits.bed INFO @ Fri, 05 Jul 2019 14:40:51: Done! pass1 - making usageList (38 chroms): 2 millis pass2 - checking and writing primary data (757 records, 4 fields): 524 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 14:41:09: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.05_peaks.xls INFO @ Fri, 05 Jul 2019 14:41:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 14:41:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/SRX330077/SRX330077.05_summits.bed INFO @ Fri, 05 Jul 2019 14:41:11: Done! pass1 - making usageList (65 chroms): 3 millis pass2 - checking and writing primary data (3263 records, 4 fields): 10 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。