Job ID = 10196005 sra ファイルのダウンロード中... Completed: 492681K bytes transferred in 23 seconds (170418K bits/sec), in 1 file. Completed: 481197K bytes transferred in 22 seconds (176657K bits/sec), in 1 file. Completed: 825152K bytes transferred in 41 seconds (161901K bits/sec), in 1 file. Completed: 809538K bytes transferred in 38 seconds (171041K bits/sec), in 1 file. Completed: 815801K bytes transferred in 33 seconds (199703K bits/sec), in 1 file. Completed: 802112K bytes transferred in 36 seconds (178796K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 11481159 spots for /home/okishinya/chipatlas/results/rn6/SRX2202899/SRR4319939.sra Written 11481159 spots total Written 17451759 spots for /home/okishinya/chipatlas/results/rn6/SRX2202899/SRR4319943.sra Written 17451759 spots total Written 17473803 spots for /home/okishinya/chipatlas/results/rn6/SRX2202899/SRR4319941.sra Written 17473803 spots total Written 17720466 spots for /home/okishinya/chipatlas/results/rn6/SRX2202899/SRR4319942.sra Written 17720466 spots total Written 17926619 spots for /home/okishinya/chipatlas/results/rn6/SRX2202899/SRR4319940.sra Written 17926619 spots total Written 11808621 spots for /home/okishinya/chipatlas/results/rn6/SRX2202899/SRR4319938.sra Written 11808621 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:22:12 93862427 reads; of these: 93862427 (100.00%) were unpaired; of these: 2679374 (2.85%) aligned 0 times 63596396 (67.75%) aligned exactly 1 time 27586657 (29.39%) aligned >1 times 97.15% overall alignment rate Time searching: 01:22:16 Overall time: 01:22:17 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 16185340 / 91183053 = 0.1775 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 11 Nov 2017 00:02:11: # Command line: callpeak -t SRX2202899.bam -f BAM -g 2.15e9 -n SRX2202899.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2202899.20 # format = BAM # ChIP-seq file = ['SRX2202899.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:02:11: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:02:11: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:02:11: # Command line: callpeak -t SRX2202899.bam -f BAM -g 2.15e9 -n SRX2202899.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2202899.05 # format = BAM # ChIP-seq file = ['SRX2202899.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:02:11: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:02:11: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:02:11: # Command line: callpeak -t SRX2202899.bam -f BAM -g 2.15e9 -n SRX2202899.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2202899.10 # format = BAM # ChIP-seq file = ['SRX2202899.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:02:11: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:02:11: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:02:18: 1000000 INFO @ Sat, 11 Nov 2017 00:02:18: 1000000 INFO @ Sat, 11 Nov 2017 00:02:18: 1000000 INFO @ Sat, 11 Nov 2017 00:02:26: 2000000 INFO @ Sat, 11 Nov 2017 00:02:26: 2000000 INFO @ Sat, 11 Nov 2017 00:02:26: 2000000 INFO @ Sat, 11 Nov 2017 00:02:33: 3000000 INFO @ Sat, 11 Nov 2017 00:02:33: 3000000 INFO @ Sat, 11 Nov 2017 00:02:33: 3000000 INFO @ Sat, 11 Nov 2017 00:02:40: 4000000 INFO @ Sat, 11 Nov 2017 00:02:40: 4000000 INFO @ Sat, 11 Nov 2017 00:02:40: 4000000 INFO @ Sat, 11 Nov 2017 00:02:47: 5000000 INFO @ Sat, 11 Nov 2017 00:02:47: 5000000 INFO @ Sat, 11 Nov 2017 00:02:47: 5000000 INFO @ Sat, 11 Nov 2017 00:02:54: 6000000 INFO @ Sat, 11 Nov 2017 00:02:54: 6000000 INFO @ Sat, 11 Nov 2017 00:02:54: 6000000 INFO @ Sat, 11 Nov 2017 00:03:01: 7000000 INFO @ Sat, 11 Nov 2017 00:03:01: 7000000 INFO @ Sat, 11 Nov 2017 00:03:01: 7000000 INFO @ Sat, 11 Nov 2017 00:03:08: 8000000 INFO @ Sat, 11 Nov 2017 00:03:08: 8000000 INFO @ Sat, 11 Nov 2017 00:03:08: 8000000 INFO @ Sat, 11 Nov 2017 00:03:15: 9000000 INFO @ Sat, 11 Nov 2017 00:03:15: 9000000 INFO @ Sat, 11 Nov 2017 00:03:15: 9000000 INFO @ Sat, 11 Nov 2017 00:03:22: 10000000 INFO @ Sat, 11 Nov 2017 00:03:22: 10000000 INFO @ Sat, 11 Nov 2017 00:03:22: 10000000 INFO @ Sat, 11 Nov 2017 00:03:29: 11000000 INFO @ Sat, 11 Nov 2017 00:03:29: 11000000 INFO @ Sat, 11 Nov 2017 00:03:29: 11000000 INFO @ Sat, 11 Nov 2017 00:03:36: 12000000 INFO @ Sat, 11 Nov 2017 00:03:36: 12000000 INFO @ Sat, 11 Nov 2017 00:03:36: 12000000 INFO @ Sat, 11 Nov 2017 00:03:43: 13000000 INFO @ Sat, 11 Nov 2017 00:03:43: 13000000 INFO @ Sat, 11 Nov 2017 00:03:43: 13000000 INFO @ Sat, 11 Nov 2017 00:03:50: 14000000 INFO @ Sat, 11 Nov 2017 00:03:50: 14000000 INFO @ Sat, 11 Nov 2017 00:03:50: 14000000 INFO @ Sat, 11 Nov 2017 00:03:58: 15000000 INFO @ Sat, 11 Nov 2017 00:03:58: 15000000 INFO @ Sat, 11 Nov 2017 00:03:58: 15000000 INFO @ Sat, 11 Nov 2017 00:04:05: 16000000 INFO @ Sat, 11 Nov 2017 00:04:05: 16000000 INFO @ Sat, 11 Nov 2017 00:04:05: 16000000 INFO @ Sat, 11 Nov 2017 00:04:12: 17000000 INFO @ Sat, 11 Nov 2017 00:04:12: 17000000 INFO @ Sat, 11 Nov 2017 00:04:12: 17000000 INFO @ Sat, 11 Nov 2017 00:04:19: 18000000 INFO @ Sat, 11 Nov 2017 00:04:19: 18000000 INFO @ Sat, 11 Nov 2017 00:04:19: 18000000 INFO @ Sat, 11 Nov 2017 00:04:27: 19000000 INFO @ Sat, 11 Nov 2017 00:04:27: 19000000 INFO @ Sat, 11 Nov 2017 00:04:27: 19000000 INFO @ Sat, 11 Nov 2017 00:04:34: 20000000 INFO @ Sat, 11 Nov 2017 00:04:34: 20000000 INFO @ Sat, 11 Nov 2017 00:04:34: 20000000 INFO @ Sat, 11 Nov 2017 00:04:40: 21000000 INFO @ Sat, 11 Nov 2017 00:04:41: 21000000 INFO @ Sat, 11 Nov 2017 00:04:41: 21000000 INFO @ Sat, 11 Nov 2017 00:04:47: 22000000 INFO @ Sat, 11 Nov 2017 00:04:47: 22000000 INFO @ Sat, 11 Nov 2017 00:04:48: 22000000 INFO @ Sat, 11 Nov 2017 00:04:54: 23000000 INFO @ Sat, 11 Nov 2017 00:04:54: 23000000 INFO @ Sat, 11 Nov 2017 00:04:55: 23000000 INFO @ Sat, 11 Nov 2017 00:05:00: 24000000 INFO @ Sat, 11 Nov 2017 00:05:01: 24000000 INFO @ Sat, 11 Nov 2017 00:05:02: 24000000 INFO @ Sat, 11 Nov 2017 00:05:07: 25000000 INFO @ Sat, 11 Nov 2017 00:05:09: 25000000 INFO @ Sat, 11 Nov 2017 00:05:10: 25000000 INFO @ Sat, 11 Nov 2017 00:05:13: 26000000 INFO @ Sat, 11 Nov 2017 00:05:16: 26000000 INFO @ Sat, 11 Nov 2017 00:05:17: 26000000 INFO @ Sat, 11 Nov 2017 00:05:20: 27000000 INFO @ Sat, 11 Nov 2017 00:05:22: 27000000 INFO @ Sat, 11 Nov 2017 00:05:24: 27000000 INFO @ Sat, 11 Nov 2017 00:05:27: 28000000 INFO @ Sat, 11 Nov 2017 00:05:29: 28000000 INFO @ Sat, 11 Nov 2017 00:05:31: 28000000 INFO @ Sat, 11 Nov 2017 00:05:35: 29000000 INFO @ Sat, 11 Nov 2017 00:05:35: 29000000 INFO @ Sat, 11 Nov 2017 00:05:38: 29000000 INFO @ Sat, 11 Nov 2017 00:05:41: 30000000 INFO @ Sat, 11 Nov 2017 00:05:42: 30000000 INFO @ Sat, 11 Nov 2017 00:05:45: 30000000 INFO @ Sat, 11 Nov 2017 00:05:48: 31000000 INFO @ Sat, 11 Nov 2017 00:05:49: 31000000 INFO @ Sat, 11 Nov 2017 00:05:52: 31000000 INFO @ Sat, 11 Nov 2017 00:05:54: 32000000 INFO @ Sat, 11 Nov 2017 00:05:56: 32000000 INFO @ Sat, 11 Nov 2017 00:06:00: 32000000 INFO @ Sat, 11 Nov 2017 00:06:01: 33000000 INFO @ Sat, 11 Nov 2017 00:06:04: 33000000 INFO @ Sat, 11 Nov 2017 00:06:07: 33000000 INFO @ Sat, 11 Nov 2017 00:06:07: 34000000 INFO @ Sat, 11 Nov 2017 00:06:11: 34000000 INFO @ Sat, 11 Nov 2017 00:06:14: 35000000 INFO @ Sat, 11 Nov 2017 00:06:15: 34000000 INFO @ Sat, 11 Nov 2017 00:06:18: 35000000 INFO @ Sat, 11 Nov 2017 00:06:20: 36000000 INFO @ Sat, 11 Nov 2017 00:06:22: 35000000 INFO @ Sat, 11 Nov 2017 00:06:25: 36000000 INFO @ Sat, 11 Nov 2017 00:06:27: 37000000 INFO @ Sat, 11 Nov 2017 00:06:29: 36000000 INFO @ Sat, 11 Nov 2017 00:06:32: 37000000 INFO @ Sat, 11 Nov 2017 00:06:33: 38000000 INFO @ Sat, 11 Nov 2017 00:06:36: 37000000 INFO @ Sat, 11 Nov 2017 00:06:39: 38000000 INFO @ Sat, 11 Nov 2017 00:06:40: 39000000 INFO @ Sat, 11 Nov 2017 00:06:43: 38000000 INFO @ Sat, 11 Nov 2017 00:06:46: 39000000 INFO @ Sat, 11 Nov 2017 00:06:47: 40000000 INFO @ Sat, 11 Nov 2017 00:06:49: 39000000 INFO @ Sat, 11 Nov 2017 00:06:53: 40000000 INFO @ Sat, 11 Nov 2017 00:06:53: 41000000 INFO @ Sat, 11 Nov 2017 00:06:57: 40000000 INFO @ Sat, 11 Nov 2017 00:07:00: 42000000 INFO @ Sat, 11 Nov 2017 00:07:00: 41000000 INFO @ Sat, 11 Nov 2017 00:07:04: 41000000 INFO @ Sat, 11 Nov 2017 00:07:06: 43000000 INFO @ Sat, 11 Nov 2017 00:07:08: 42000000 INFO @ Sat, 11 Nov 2017 00:07:11: 42000000 INFO @ Sat, 11 Nov 2017 00:07:13: 44000000 INFO @ Sat, 11 Nov 2017 00:07:15: 43000000 INFO @ Sat, 11 Nov 2017 00:07:18: 43000000 INFO @ Sat, 11 Nov 2017 00:07:19: 45000000 INFO @ Sat, 11 Nov 2017 00:07:22: 44000000 INFO @ Sat, 11 Nov 2017 00:07:26: 46000000 INFO @ Sat, 11 Nov 2017 00:07:26: 44000000 INFO @ Sat, 11 Nov 2017 00:07:29: 45000000 INFO @ Sat, 11 Nov 2017 00:07:32: 47000000 INFO @ Sat, 11 Nov 2017 00:07:33: 45000000 INFO @ Sat, 11 Nov 2017 00:07:37: 46000000 INFO @ Sat, 11 Nov 2017 00:07:39: 48000000 INFO @ Sat, 11 Nov 2017 00:07:40: 46000000 INFO @ Sat, 11 Nov 2017 00:07:44: 47000000 INFO @ Sat, 11 Nov 2017 00:07:45: 49000000 INFO @ Sat, 11 Nov 2017 00:07:47: 47000000 INFO @ Sat, 11 Nov 2017 00:07:51: 48000000 INFO @ Sat, 11 Nov 2017 00:07:52: 50000000 INFO @ Sat, 11 Nov 2017 00:07:55: 48000000 INFO @ Sat, 11 Nov 2017 00:07:59: 49000000 INFO @ Sat, 11 Nov 2017 00:08:01: 51000000 INFO @ Sat, 11 Nov 2017 00:08:04: 49000000 INFO @ Sat, 11 Nov 2017 00:08:08: 50000000 INFO @ Sat, 11 Nov 2017 00:08:09: 52000000 INFO @ Sat, 11 Nov 2017 00:08:12: 50000000 INFO @ Sat, 11 Nov 2017 00:08:16: 51000000 INFO @ Sat, 11 Nov 2017 00:08:16: 53000000 INFO @ Sat, 11 Nov 2017 00:08:20: 51000000 INFO @ Sat, 11 Nov 2017 00:08:23: 52000000 INFO @ Sat, 11 Nov 2017 00:08:24: 54000000 INFO @ Sat, 11 Nov 2017 00:08:27: 52000000 INFO @ Sat, 11 Nov 2017 00:08:31: 53000000 INFO @ Sat, 11 Nov 2017 00:08:32: 55000000 INFO @ Sat, 11 Nov 2017 00:08:35: 53000000 INFO @ Sat, 11 Nov 2017 00:08:39: 54000000 INFO @ Sat, 11 Nov 2017 00:08:40: 56000000 INFO @ Sat, 11 Nov 2017 00:08:43: 54000000 INFO @ Sat, 11 Nov 2017 00:08:47: 55000000 INFO @ Sat, 11 Nov 2017 00:08:48: 57000000 INFO @ Sat, 11 Nov 2017 00:08:51: 55000000 INFO @ Sat, 11 Nov 2017 00:08:55: 56000000 INFO @ Sat, 11 Nov 2017 00:08:56: 58000000 INFO @ Sat, 11 Nov 2017 00:08:59: 56000000 INFO @ Sat, 11 Nov 2017 00:09:03: 57000000 INFO @ Sat, 11 Nov 2017 00:09:04: 59000000 INFO @ Sat, 11 Nov 2017 00:09:07: 57000000 INFO @ Sat, 11 Nov 2017 00:09:10: 58000000 INFO @ Sat, 11 Nov 2017 00:09:10: 60000000 INFO @ Sat, 11 Nov 2017 00:09:14: 58000000 INFO @ Sat, 11 Nov 2017 00:09:17: 61000000 INFO @ Sat, 11 Nov 2017 00:09:17: 59000000 INFO @ Sat, 11 Nov 2017 00:09:21: 59000000 INFO @ Sat, 11 Nov 2017 00:09:24: 62000000 INFO @ Sat, 11 Nov 2017 00:09:24: 60000000 INFO @ Sat, 11 Nov 2017 00:09:28: 60000000 INFO @ Sat, 11 Nov 2017 00:09:30: 63000000 INFO @ Sat, 11 Nov 2017 00:09:32: 61000000 INFO @ Sat, 11 Nov 2017 00:09:35: 61000000 INFO @ Sat, 11 Nov 2017 00:09:37: 64000000 INFO @ Sat, 11 Nov 2017 00:09:39: 62000000 INFO @ Sat, 11 Nov 2017 00:09:43: 62000000 INFO @ Sat, 11 Nov 2017 00:09:44: 65000000 INFO @ Sat, 11 Nov 2017 00:09:46: 63000000 INFO @ Sat, 11 Nov 2017 00:09:50: 63000000 INFO @ Sat, 11 Nov 2017 00:09:51: 66000000 INFO @ Sat, 11 Nov 2017 00:09:54: 64000000 INFO @ Sat, 11 Nov 2017 00:09:57: 67000000 INFO @ Sat, 11 Nov 2017 00:09:57: 64000000 INFO @ Sat, 11 Nov 2017 00:10:01: 65000000 INFO @ Sat, 11 Nov 2017 00:10:04: 68000000 INFO @ Sat, 11 Nov 2017 00:10:05: 65000000 INFO @ Sat, 11 Nov 2017 00:10:08: 66000000 INFO @ Sat, 11 Nov 2017 00:10:11: 69000000 INFO @ Sat, 11 Nov 2017 00:10:12: 66000000 INFO @ Sat, 11 Nov 2017 00:10:16: 67000000 INFO @ Sat, 11 Nov 2017 00:10:17: 70000000 INFO @ Sat, 11 Nov 2017 00:10:19: 67000000 INFO @ Sat, 11 Nov 2017 00:10:23: 68000000 INFO @ Sat, 11 Nov 2017 00:10:24: 71000000 INFO @ Sat, 11 Nov 2017 00:10:27: 68000000 INFO @ Sat, 11 Nov 2017 00:10:31: 72000000 INFO @ Sat, 11 Nov 2017 00:10:31: 69000000 INFO @ Sat, 11 Nov 2017 00:10:34: 69000000 INFO @ Sat, 11 Nov 2017 00:10:37: 73000000 INFO @ Sat, 11 Nov 2017 00:10:38: 70000000 INFO @ Sat, 11 Nov 2017 00:10:41: 70000000 INFO @ Sat, 11 Nov 2017 00:10:44: 74000000 INFO @ Sat, 11 Nov 2017 00:10:46: 71000000 INFO @ Sat, 11 Nov 2017 00:10:49: 71000000 INFO @ Sat, 11 Nov 2017 00:10:51: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:10:51: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:10:51: #1 total tags in treatment: 74997713 INFO @ Sat, 11 Nov 2017 00:10:51: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:10:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:10:53: #1 tags after filtering in treatment: 74997680 INFO @ Sat, 11 Nov 2017 00:10:53: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:10:53: #1 finished! INFO @ Sat, 11 Nov 2017 00:10:53: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:10:53: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:10:53: 72000000 INFO @ Sat, 11 Nov 2017 00:10:56: 72000000 INFO @ Sat, 11 Nov 2017 00:10:59: #2 number of paired peaks: 19358 INFO @ Sat, 11 Nov 2017 00:10:59: start model_add_line... INFO @ Sat, 11 Nov 2017 00:11:00: 73000000 INFO @ Sat, 11 Nov 2017 00:11:00: start X-correlation... INFO @ Sat, 11 Nov 2017 00:11:00: end of X-cor INFO @ Sat, 11 Nov 2017 00:11:00: #2 finished! INFO @ Sat, 11 Nov 2017 00:11:00: #2 predicted fragment length is 102 bps INFO @ Sat, 11 Nov 2017 00:11:00: #2 alternative fragment length(s) may be 102 bps INFO @ Sat, 11 Nov 2017 00:11:00: #2.2 Generate R script for model : SRX2202899.20_model.r INFO @ Sat, 11 Nov 2017 00:11:00: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:11:00: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:11:04: 73000000 INFO @ Sat, 11 Nov 2017 00:11:08: 74000000 INFO @ Sat, 11 Nov 2017 00:11:11: 74000000 INFO @ Sat, 11 Nov 2017 00:11:15: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:11:15: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:11:15: #1 total tags in treatment: 74997713 INFO @ Sat, 11 Nov 2017 00:11:15: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:11:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:11:17: #1 tags after filtering in treatment: 74997680 INFO @ Sat, 11 Nov 2017 00:11:17: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:11:17: #1 finished! INFO @ Sat, 11 Nov 2017 00:11:17: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:11:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:11:18: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:11:18: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:11:18: #1 total tags in treatment: 74997713 INFO @ Sat, 11 Nov 2017 00:11:18: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:11:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:11:20: #1 tags after filtering in treatment: 74997680 INFO @ Sat, 11 Nov 2017 00:11:20: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:11:20: #1 finished! INFO @ Sat, 11 Nov 2017 00:11:20: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:11:20: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:11:24: #2 number of paired peaks: 19358 INFO @ Sat, 11 Nov 2017 00:11:24: start model_add_line... INFO @ Sat, 11 Nov 2017 00:11:25: start X-correlation... INFO @ Sat, 11 Nov 2017 00:11:25: end of X-cor INFO @ Sat, 11 Nov 2017 00:11:25: #2 finished! INFO @ Sat, 11 Nov 2017 00:11:25: #2 predicted fragment length is 102 bps INFO @ Sat, 11 Nov 2017 00:11:25: #2 alternative fragment length(s) may be 102 bps INFO @ Sat, 11 Nov 2017 00:11:25: #2.2 Generate R script for model : SRX2202899.05_model.r INFO @ Sat, 11 Nov 2017 00:11:25: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:11:25: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:11:28: #2 number of paired peaks: 19358 INFO @ Sat, 11 Nov 2017 00:11:28: start model_add_line... INFO @ Sat, 11 Nov 2017 00:11:29: start X-correlation... INFO @ Sat, 11 Nov 2017 00:11:29: end of X-cor INFO @ Sat, 11 Nov 2017 00:11:29: #2 finished! INFO @ Sat, 11 Nov 2017 00:11:29: #2 predicted fragment length is 102 bps INFO @ Sat, 11 Nov 2017 00:11:29: #2 alternative fragment length(s) may be 102 bps INFO @ Sat, 11 Nov 2017 00:11:29: #2.2 Generate R script for model : SRX2202899.10_model.r INFO @ Sat, 11 Nov 2017 00:11:29: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:11:29: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:14:01: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:14:35: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:14:44: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:15:41: #4 Write output xls file... SRX2202899.20_peaks.xls INFO @ Sat, 11 Nov 2017 00:15:41: #4 Write peak in narrowPeak format file... SRX2202899.20_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:15:41: #4 Write summits bed file... SRX2202899.20_summits.bed INFO @ Sat, 11 Nov 2017 00:15:41: Done! pass1 - making usageList (52 chroms): 1 millis pass2 - checking and writing primary data (2214 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 00:16:16: #4 Write output xls file... SRX2202899.05_peaks.xls INFO @ Sat, 11 Nov 2017 00:16:16: #4 Write peak in narrowPeak format file... SRX2202899.05_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:16:16: #4 Write summits bed file... SRX2202899.05_summits.bed INFO @ Sat, 11 Nov 2017 00:16:16: Done! pass1 - making usageList (110 chroms): 4 millis pass2 - checking and writing primary data (21644 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 00:16:23: #4 Write output xls file... SRX2202899.10_peaks.xls INFO @ Sat, 11 Nov 2017 00:16:23: #4 Write peak in narrowPeak format file... SRX2202899.10_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:16:23: #4 Write summits bed file... SRX2202899.10_summits.bed INFO @ Sat, 11 Nov 2017 00:16:23: Done! pass1 - making usageList (76 chroms): 3 millis pass2 - checking and writing primary data (11347 records, 4 fields): 16 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。