Job ID = 10194738 sra ファイルのダウンロード中... Completed: 1613257K bytes transferred in 16 seconds (811766K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 78052139 spots for /home/okishinya/chipatlas/results/rn6/SRX1068227/SRR2073186.sra Written 78052139 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:01:28 78052139 reads; of these: 78052139 (100.00%) were unpaired; of these: 1650691 (2.11%) aligned 0 times 54942910 (70.39%) aligned exactly 1 time 21458538 (27.49%) aligned >1 times 97.89% overall alignment rate Time searching: 01:01:30 Overall time: 01:01:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 3936293 / 76401448 = 0.0515 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 11 Nov 2017 00:26:49: # Command line: callpeak -t SRX1068227.bam -f BAM -g 2.15e9 -n SRX1068227.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1068227.20 # format = BAM # ChIP-seq file = ['SRX1068227.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:26:49: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:26:49: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:26:49: # Command line: callpeak -t SRX1068227.bam -f BAM -g 2.15e9 -n SRX1068227.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1068227.10 # format = BAM # ChIP-seq file = ['SRX1068227.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:26:49: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:26:49: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:26:49: # Command line: callpeak -t SRX1068227.bam -f BAM -g 2.15e9 -n SRX1068227.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1068227.05 # format = BAM # ChIP-seq file = ['SRX1068227.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:26:49: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:26:49: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:26:57: 1000000 INFO @ Sat, 11 Nov 2017 00:26:57: 1000000 INFO @ Sat, 11 Nov 2017 00:26:57: 1000000 INFO @ Sat, 11 Nov 2017 00:27:04: 2000000 INFO @ Sat, 11 Nov 2017 00:27:04: 2000000 INFO @ Sat, 11 Nov 2017 00:27:04: 2000000 INFO @ Sat, 11 Nov 2017 00:27:11: 3000000 INFO @ Sat, 11 Nov 2017 00:27:11: 3000000 INFO @ Sat, 11 Nov 2017 00:27:11: 3000000 INFO @ Sat, 11 Nov 2017 00:27:18: 4000000 INFO @ Sat, 11 Nov 2017 00:27:18: 4000000 INFO @ Sat, 11 Nov 2017 00:27:18: 4000000 INFO @ Sat, 11 Nov 2017 00:27:25: 5000000 INFO @ Sat, 11 Nov 2017 00:27:25: 5000000 INFO @ Sat, 11 Nov 2017 00:27:25: 5000000 INFO @ Sat, 11 Nov 2017 00:27:32: 6000000 INFO @ Sat, 11 Nov 2017 00:27:32: 6000000 INFO @ Sat, 11 Nov 2017 00:27:32: 6000000 INFO @ Sat, 11 Nov 2017 00:27:39: 7000000 INFO @ Sat, 11 Nov 2017 00:27:39: 7000000 INFO @ Sat, 11 Nov 2017 00:27:39: 7000000 INFO @ Sat, 11 Nov 2017 00:27:46: 8000000 INFO @ Sat, 11 Nov 2017 00:27:46: 8000000 INFO @ Sat, 11 Nov 2017 00:27:46: 8000000 INFO @ Sat, 11 Nov 2017 00:27:52: 9000000 INFO @ Sat, 11 Nov 2017 00:27:52: 9000000 INFO @ Sat, 11 Nov 2017 00:27:52: 9000000 INFO @ Sat, 11 Nov 2017 00:27:59: 10000000 INFO @ Sat, 11 Nov 2017 00:27:59: 10000000 INFO @ Sat, 11 Nov 2017 00:27:59: 10000000 INFO @ Sat, 11 Nov 2017 00:28:06: 11000000 INFO @ Sat, 11 Nov 2017 00:28:06: 11000000 INFO @ Sat, 11 Nov 2017 00:28:06: 11000000 INFO @ Sat, 11 Nov 2017 00:28:13: 12000000 INFO @ Sat, 11 Nov 2017 00:28:13: 12000000 INFO @ Sat, 11 Nov 2017 00:28:13: 12000000 INFO @ Sat, 11 Nov 2017 00:28:20: 13000000 INFO @ Sat, 11 Nov 2017 00:28:20: 13000000 INFO @ Sat, 11 Nov 2017 00:28:20: 13000000 INFO @ Sat, 11 Nov 2017 00:28:26: 14000000 INFO @ Sat, 11 Nov 2017 00:28:27: 14000000 INFO @ Sat, 11 Nov 2017 00:28:27: 14000000 INFO @ Sat, 11 Nov 2017 00:28:34: 15000000 INFO @ Sat, 11 Nov 2017 00:28:34: 15000000 INFO @ Sat, 11 Nov 2017 00:28:35: 15000000 INFO @ Sat, 11 Nov 2017 00:28:40: 16000000 INFO @ Sat, 11 Nov 2017 00:28:41: 16000000 INFO @ Sat, 11 Nov 2017 00:28:42: 16000000 INFO @ Sat, 11 Nov 2017 00:28:47: 17000000 INFO @ Sat, 11 Nov 2017 00:28:48: 17000000 INFO @ Sat, 11 Nov 2017 00:28:50: 17000000 INFO @ Sat, 11 Nov 2017 00:28:54: 18000000 INFO @ Sat, 11 Nov 2017 00:28:55: 18000000 INFO @ Sat, 11 Nov 2017 00:28:57: 18000000 INFO @ Sat, 11 Nov 2017 00:29:01: 19000000 INFO @ Sat, 11 Nov 2017 00:29:01: 19000000 INFO @ Sat, 11 Nov 2017 00:29:04: 19000000 INFO @ Sat, 11 Nov 2017 00:29:08: 20000000 INFO @ Sat, 11 Nov 2017 00:29:09: 20000000 INFO @ Sat, 11 Nov 2017 00:29:11: 20000000 INFO @ Sat, 11 Nov 2017 00:29:15: 21000000 INFO @ Sat, 11 Nov 2017 00:29:16: 21000000 INFO @ Sat, 11 Nov 2017 00:29:18: 21000000 INFO @ Sat, 11 Nov 2017 00:29:22: 22000000 INFO @ Sat, 11 Nov 2017 00:29:23: 22000000 INFO @ Sat, 11 Nov 2017 00:29:26: 22000000 INFO @ Sat, 11 Nov 2017 00:29:29: 23000000 INFO @ Sat, 11 Nov 2017 00:29:30: 23000000 INFO @ Sat, 11 Nov 2017 00:29:32: 23000000 INFO @ Sat, 11 Nov 2017 00:29:36: 24000000 INFO @ Sat, 11 Nov 2017 00:29:37: 24000000 INFO @ Sat, 11 Nov 2017 00:29:39: 24000000 INFO @ Sat, 11 Nov 2017 00:29:43: 25000000 INFO @ Sat, 11 Nov 2017 00:29:44: 25000000 INFO @ Sat, 11 Nov 2017 00:29:46: 25000000 INFO @ Sat, 11 Nov 2017 00:29:50: 26000000 INFO @ Sat, 11 Nov 2017 00:29:51: 26000000 INFO @ Sat, 11 Nov 2017 00:29:53: 26000000 INFO @ Sat, 11 Nov 2017 00:29:57: 27000000 INFO @ Sat, 11 Nov 2017 00:29:59: 27000000 INFO @ Sat, 11 Nov 2017 00:30:00: 27000000 INFO @ Sat, 11 Nov 2017 00:30:05: 28000000 INFO @ Sat, 11 Nov 2017 00:30:06: 28000000 INFO @ Sat, 11 Nov 2017 00:30:07: 28000000 INFO @ Sat, 11 Nov 2017 00:30:12: 29000000 INFO @ Sat, 11 Nov 2017 00:30:13: 29000000 INFO @ Sat, 11 Nov 2017 00:30:14: 29000000 INFO @ Sat, 11 Nov 2017 00:30:19: 30000000 INFO @ Sat, 11 Nov 2017 00:30:21: 30000000 INFO @ Sat, 11 Nov 2017 00:30:21: 30000000 INFO @ Sat, 11 Nov 2017 00:30:27: 31000000 INFO @ Sat, 11 Nov 2017 00:30:28: 31000000 INFO @ Sat, 11 Nov 2017 00:30:28: 31000000 INFO @ Sat, 11 Nov 2017 00:30:34: 32000000 INFO @ Sat, 11 Nov 2017 00:30:35: 32000000 INFO @ Sat, 11 Nov 2017 00:30:36: 32000000 INFO @ Sat, 11 Nov 2017 00:30:41: 33000000 INFO @ Sat, 11 Nov 2017 00:30:43: 33000000 INFO @ Sat, 11 Nov 2017 00:30:43: 33000000 INFO @ Sat, 11 Nov 2017 00:30:48: 34000000 INFO @ Sat, 11 Nov 2017 00:30:50: 34000000 INFO @ Sat, 11 Nov 2017 00:30:50: 34000000 INFO @ Sat, 11 Nov 2017 00:30:54: 35000000 INFO @ Sat, 11 Nov 2017 00:30:57: 35000000 INFO @ Sat, 11 Nov 2017 00:30:58: 35000000 INFO @ Sat, 11 Nov 2017 00:31:01: 36000000 INFO @ Sat, 11 Nov 2017 00:31:04: 36000000 INFO @ Sat, 11 Nov 2017 00:31:05: 36000000 INFO @ Sat, 11 Nov 2017 00:31:07: 37000000 INFO @ Sat, 11 Nov 2017 00:31:11: 37000000 INFO @ Sat, 11 Nov 2017 00:31:12: 37000000 INFO @ Sat, 11 Nov 2017 00:31:14: 38000000 INFO @ Sat, 11 Nov 2017 00:31:18: 38000000 INFO @ Sat, 11 Nov 2017 00:31:19: 38000000 INFO @ Sat, 11 Nov 2017 00:31:21: 39000000 INFO @ Sat, 11 Nov 2017 00:31:25: 39000000 INFO @ Sat, 11 Nov 2017 00:31:26: 39000000 INFO @ Sat, 11 Nov 2017 00:31:28: 40000000 INFO @ Sat, 11 Nov 2017 00:31:31: 40000000 INFO @ Sat, 11 Nov 2017 00:31:33: 40000000 INFO @ Sat, 11 Nov 2017 00:31:34: 41000000 INFO @ Sat, 11 Nov 2017 00:31:38: 41000000 INFO @ Sat, 11 Nov 2017 00:31:39: 41000000 INFO @ Sat, 11 Nov 2017 00:31:41: 42000000 INFO @ Sat, 11 Nov 2017 00:31:45: 42000000 INFO @ Sat, 11 Nov 2017 00:31:46: 42000000 INFO @ Sat, 11 Nov 2017 00:31:48: 43000000 INFO @ Sat, 11 Nov 2017 00:31:52: 43000000 INFO @ Sat, 11 Nov 2017 00:31:53: 43000000 INFO @ Sat, 11 Nov 2017 00:31:54: 44000000 INFO @ Sat, 11 Nov 2017 00:31:58: 44000000 INFO @ Sat, 11 Nov 2017 00:32:00: 44000000 INFO @ Sat, 11 Nov 2017 00:32:01: 45000000 INFO @ Sat, 11 Nov 2017 00:32:05: 45000000 INFO @ Sat, 11 Nov 2017 00:32:07: 45000000 INFO @ Sat, 11 Nov 2017 00:32:08: 46000000 INFO @ Sat, 11 Nov 2017 00:32:12: 46000000 INFO @ Sat, 11 Nov 2017 00:32:13: 46000000 INFO @ Sat, 11 Nov 2017 00:32:14: 47000000 INFO @ Sat, 11 Nov 2017 00:32:19: 47000000 INFO @ Sat, 11 Nov 2017 00:32:20: 47000000 INFO @ Sat, 11 Nov 2017 00:32:21: 48000000 INFO @ Sat, 11 Nov 2017 00:32:26: 48000000 INFO @ Sat, 11 Nov 2017 00:32:27: 48000000 INFO @ Sat, 11 Nov 2017 00:32:28: 49000000 INFO @ Sat, 11 Nov 2017 00:32:32: 49000000 INFO @ Sat, 11 Nov 2017 00:32:34: 49000000 INFO @ Sat, 11 Nov 2017 00:32:34: 50000000 INFO @ Sat, 11 Nov 2017 00:32:39: 50000000 INFO @ Sat, 11 Nov 2017 00:32:41: 50000000 INFO @ Sat, 11 Nov 2017 00:32:41: 51000000 INFO @ Sat, 11 Nov 2017 00:32:46: 51000000 INFO @ Sat, 11 Nov 2017 00:32:48: 51000000 INFO @ Sat, 11 Nov 2017 00:32:48: 52000000 INFO @ Sat, 11 Nov 2017 00:32:54: 52000000 INFO @ Sat, 11 Nov 2017 00:32:54: 53000000 INFO @ Sat, 11 Nov 2017 00:32:55: 52000000 INFO @ Sat, 11 Nov 2017 00:33:01: 54000000 INFO @ Sat, 11 Nov 2017 00:33:01: 53000000 INFO @ Sat, 11 Nov 2017 00:33:03: 53000000 INFO @ Sat, 11 Nov 2017 00:33:07: 55000000 INFO @ Sat, 11 Nov 2017 00:33:09: 54000000 INFO @ Sat, 11 Nov 2017 00:33:11: 54000000 INFO @ Sat, 11 Nov 2017 00:33:14: 56000000 INFO @ Sat, 11 Nov 2017 00:33:16: 55000000 INFO @ Sat, 11 Nov 2017 00:33:18: 55000000 INFO @ Sat, 11 Nov 2017 00:33:20: 57000000 INFO @ Sat, 11 Nov 2017 00:33:24: 56000000 INFO @ Sat, 11 Nov 2017 00:33:26: 56000000 INFO @ Sat, 11 Nov 2017 00:33:27: 58000000 INFO @ Sat, 11 Nov 2017 00:33:31: 57000000 INFO @ Sat, 11 Nov 2017 00:33:33: 57000000 INFO @ Sat, 11 Nov 2017 00:33:33: 59000000 INFO @ Sat, 11 Nov 2017 00:33:39: 58000000 INFO @ Sat, 11 Nov 2017 00:33:40: 60000000 INFO @ Sat, 11 Nov 2017 00:33:41: 58000000 INFO @ Sat, 11 Nov 2017 00:33:46: 59000000 INFO @ Sat, 11 Nov 2017 00:33:46: 61000000 INFO @ Sat, 11 Nov 2017 00:33:48: 59000000 INFO @ Sat, 11 Nov 2017 00:33:53: 62000000 INFO @ Sat, 11 Nov 2017 00:33:54: 60000000 INFO @ Sat, 11 Nov 2017 00:33:56: 60000000 INFO @ Sat, 11 Nov 2017 00:34:00: 63000000 INFO @ Sat, 11 Nov 2017 00:34:02: 61000000 INFO @ Sat, 11 Nov 2017 00:34:03: 61000000 INFO @ Sat, 11 Nov 2017 00:34:07: 64000000 INFO @ Sat, 11 Nov 2017 00:34:09: 62000000 INFO @ Sat, 11 Nov 2017 00:34:11: 62000000 INFO @ Sat, 11 Nov 2017 00:34:13: 65000000 INFO @ Sat, 11 Nov 2017 00:34:17: 63000000 INFO @ Sat, 11 Nov 2017 00:34:18: 63000000 INFO @ Sat, 11 Nov 2017 00:34:20: 66000000 INFO @ Sat, 11 Nov 2017 00:34:24: 64000000 INFO @ Sat, 11 Nov 2017 00:34:26: 64000000 INFO @ Sat, 11 Nov 2017 00:34:26: 67000000 INFO @ Sat, 11 Nov 2017 00:34:32: 65000000 INFO @ Sat, 11 Nov 2017 00:34:33: 68000000 INFO @ Sat, 11 Nov 2017 00:34:33: 65000000 INFO @ Sat, 11 Nov 2017 00:34:39: 69000000 INFO @ Sat, 11 Nov 2017 00:34:39: 66000000 INFO @ Sat, 11 Nov 2017 00:34:41: 66000000 INFO @ Sat, 11 Nov 2017 00:34:46: 70000000 INFO @ Sat, 11 Nov 2017 00:34:47: 67000000 INFO @ Sat, 11 Nov 2017 00:34:48: 67000000 INFO @ Sat, 11 Nov 2017 00:34:52: 71000000 INFO @ Sat, 11 Nov 2017 00:34:54: 68000000 INFO @ Sat, 11 Nov 2017 00:34:56: 68000000 INFO @ Sat, 11 Nov 2017 00:34:59: 72000000 INFO @ Sat, 11 Nov 2017 00:35:02: 69000000 INFO @ Sat, 11 Nov 2017 00:35:03: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:35:03: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:35:03: #1 total tags in treatment: 72465155 INFO @ Sat, 11 Nov 2017 00:35:03: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:35:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:35:04: 69000000 INFO @ Sat, 11 Nov 2017 00:35:04: #1 tags after filtering in treatment: 72465113 INFO @ Sat, 11 Nov 2017 00:35:04: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:35:04: #1 finished! INFO @ Sat, 11 Nov 2017 00:35:04: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:35:04: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:35:10: 70000000 INFO @ Sat, 11 Nov 2017 00:35:10: #2 number of paired peaks: 5690 INFO @ Sat, 11 Nov 2017 00:35:10: start model_add_line... INFO @ Sat, 11 Nov 2017 00:35:11: start X-correlation... INFO @ Sat, 11 Nov 2017 00:35:11: 70000000 INFO @ Sat, 11 Nov 2017 00:35:11: end of X-cor INFO @ Sat, 11 Nov 2017 00:35:11: #2 finished! INFO @ Sat, 11 Nov 2017 00:35:11: #2 predicted fragment length is 50 bps INFO @ Sat, 11 Nov 2017 00:35:11: #2 alternative fragment length(s) may be 50 bps INFO @ Sat, 11 Nov 2017 00:35:11: #2.2 Generate R script for model : SRX1068227.05_model.r WARNING @ Sat, 11 Nov 2017 00:35:11: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 00:35:11: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Sat, 11 Nov 2017 00:35:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 00:35:11: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:35:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:35:18: 71000000 INFO @ Sat, 11 Nov 2017 00:35:19: 71000000 INFO @ Sat, 11 Nov 2017 00:35:26: 72000000 INFO @ Sat, 11 Nov 2017 00:35:26: 72000000 INFO @ Sat, 11 Nov 2017 00:35:30: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:35:30: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:35:30: #1 total tags in treatment: 72465155 INFO @ Sat, 11 Nov 2017 00:35:30: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:35:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:35:30: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 00:35:30: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 00:35:30: #1 total tags in treatment: 72465155 INFO @ Sat, 11 Nov 2017 00:35:30: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 00:35:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 00:35:31: #1 tags after filtering in treatment: 72465113 INFO @ Sat, 11 Nov 2017 00:35:31: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:35:31: #1 finished! INFO @ Sat, 11 Nov 2017 00:35:31: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:35:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:35:32: #1 tags after filtering in treatment: 72465113 INFO @ Sat, 11 Nov 2017 00:35:32: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 00:35:32: #1 finished! INFO @ Sat, 11 Nov 2017 00:35:32: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 00:35:32: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 00:35:38: #2 number of paired peaks: 5690 INFO @ Sat, 11 Nov 2017 00:35:38: start model_add_line... INFO @ Sat, 11 Nov 2017 00:35:38: #2 number of paired peaks: 5690 INFO @ Sat, 11 Nov 2017 00:35:38: start model_add_line... INFO @ Sat, 11 Nov 2017 00:35:38: start X-correlation... INFO @ Sat, 11 Nov 2017 00:35:38: end of X-cor INFO @ Sat, 11 Nov 2017 00:35:38: #2 finished! INFO @ Sat, 11 Nov 2017 00:35:38: #2 predicted fragment length is 50 bps INFO @ Sat, 11 Nov 2017 00:35:38: #2 alternative fragment length(s) may be 50 bps INFO @ Sat, 11 Nov 2017 00:35:38: #2.2 Generate R script for model : SRX1068227.10_model.r WARNING @ Sat, 11 Nov 2017 00:35:38: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 00:35:38: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Sat, 11 Nov 2017 00:35:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 00:35:38: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:35:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:35:39: start X-correlation... INFO @ Sat, 11 Nov 2017 00:35:39: end of X-cor INFO @ Sat, 11 Nov 2017 00:35:39: #2 finished! INFO @ Sat, 11 Nov 2017 00:35:39: #2 predicted fragment length is 50 bps INFO @ Sat, 11 Nov 2017 00:35:39: #2 alternative fragment length(s) may be 50 bps INFO @ Sat, 11 Nov 2017 00:35:39: #2.2 Generate R script for model : SRX1068227.20_model.r WARNING @ Sat, 11 Nov 2017 00:35:39: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 00:35:39: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Sat, 11 Nov 2017 00:35:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 00:35:39: #3 Call peaks... INFO @ Sat, 11 Nov 2017 00:35:39: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 00:37:59: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:38:30: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:38:41: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 00:39:41: #4 Write output xls file... SRX1068227.05_peaks.xls INFO @ Sat, 11 Nov 2017 00:39:41: #4 Write peak in narrowPeak format file... SRX1068227.05_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:39:41: #4 Write summits bed file... SRX1068227.05_summits.bed INFO @ Sat, 11 Nov 2017 00:39:41: Done! pass1 - making usageList (65 chroms): 1 millis pass2 - checking and writing primary data (3342 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 00:40:06: #4 Write output xls file... SRX1068227.20_peaks.xls INFO @ Sat, 11 Nov 2017 00:40:06: #4 Write peak in narrowPeak format file... SRX1068227.20_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:40:06: #4 Write summits bed file... SRX1068227.20_summits.bed INFO @ Sat, 11 Nov 2017 00:40:06: Done! pass1 - making usageList (36 chroms): 1 millis pass2 - checking and writing primary data (770 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 00:40:19: #4 Write output xls file... SRX1068227.10_peaks.xls INFO @ Sat, 11 Nov 2017 00:40:19: #4 Write peak in narrowPeak format file... SRX1068227.10_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 00:40:19: #4 Write summits bed file... SRX1068227.10_summits.bed INFO @ Sat, 11 Nov 2017 00:40:19: Done! pass1 - making usageList (47 chroms): 1 millis pass2 - checking and writing primary data (1750 records, 4 fields): 5 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。