Job ID = 10194736 sra ファイルのダウンロード中... Completed: 2709115K bytes transferred in 34 seconds (641370K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 131858579 spots for /home/okishinya/chipatlas/results/rn6/SRX1068224/SRR2073184.sra Written 131858579 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:01 Multiseed full-index search: 03:44:20 131858579 reads; of these: 131858579 (100.00%) were unpaired; of these: 2799439 (2.12%) aligned 0 times 92923860 (70.47%) aligned exactly 1 time 36135280 (27.40%) aligned >1 times 97.88% overall alignment rate Time searching: 03:44:24 Overall time: 03:44:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 56 files... [bam_rmdupse_core] 12215455 / 129059140 = 0.0947 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 11 Nov 2017 00:42:04: # Command line: callpeak -t SRX1068224.bam -f BAM -g 2.15e9 -n SRX1068224.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1068224.10 # format = BAM # ChIP-seq file = ['SRX1068224.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:42:04: # Command line: callpeak -t SRX1068224.bam -f BAM -g 2.15e9 -n SRX1068224.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1068224.20 # format = BAM # ChIP-seq file = ['SRX1068224.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:42:04: # Command line: callpeak -t SRX1068224.bam -f BAM -g 2.15e9 -n SRX1068224.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1068224.05 # format = BAM # ChIP-seq file = ['SRX1068224.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Nov 2017 00:42:04: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:42:04: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:42:04: #1 read tag files... INFO @ Sat, 11 Nov 2017 00:42:04: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:42:04: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:42:04: #1 read treatment tags... INFO @ Sat, 11 Nov 2017 00:42:14: 1000000 INFO @ Sat, 11 Nov 2017 00:42:17: 1000000 INFO @ Sat, 11 Nov 2017 00:42:19: 1000000 INFO @ Sat, 11 Nov 2017 00:42:23: 2000000 INFO @ Sat, 11 Nov 2017 00:42:30: 2000000 INFO @ Sat, 11 Nov 2017 00:42:32: 3000000 INFO @ Sat, 11 Nov 2017 00:42:35: 2000000 INFO @ Sat, 11 Nov 2017 00:42:42: 4000000 INFO @ Sat, 11 Nov 2017 00:42:43: 3000000 INFO @ Sat, 11 Nov 2017 00:42:51: 5000000 INFO @ Sat, 11 Nov 2017 00:42:51: 3000000 INFO @ Sat, 11 Nov 2017 00:42:57: 4000000 INFO @ Sat, 11 Nov 2017 00:43:00: 6000000 INFO @ Sat, 11 Nov 2017 00:43:06: 4000000 INFO @ Sat, 11 Nov 2017 00:43:08: 5000000 INFO @ Sat, 11 Nov 2017 00:43:09: 7000000 INFO @ Sat, 11 Nov 2017 00:43:19: 8000000 INFO @ Sat, 11 Nov 2017 00:43:21: 6000000 INFO @ Sat, 11 Nov 2017 00:43:21: 5000000 INFO @ Sat, 11 Nov 2017 00:43:28: 9000000 INFO @ Sat, 11 Nov 2017 00:43:34: 7000000 INFO @ Sat, 11 Nov 2017 00:43:37: 10000000 INFO @ Sat, 11 Nov 2017 00:43:38: 6000000 INFO @ Sat, 11 Nov 2017 00:43:46: 8000000 INFO @ Sat, 11 Nov 2017 00:43:46: 11000000 INFO @ Sat, 11 Nov 2017 00:43:54: 7000000 INFO @ Sat, 11 Nov 2017 00:43:55: 12000000 INFO @ Sat, 11 Nov 2017 00:43:58: 9000000 INFO @ Sat, 11 Nov 2017 00:44:04: 13000000 INFO @ Sat, 11 Nov 2017 00:44:11: 10000000 INFO @ Sat, 11 Nov 2017 00:44:11: 8000000 INFO @ Sat, 11 Nov 2017 00:44:13: 14000000 INFO @ Sat, 11 Nov 2017 00:44:22: 15000000 INFO @ Sat, 11 Nov 2017 00:44:24: 11000000 INFO @ Sat, 11 Nov 2017 00:44:27: 9000000 INFO @ Sat, 11 Nov 2017 00:44:30: 16000000 INFO @ Sat, 11 Nov 2017 00:44:36: 12000000 INFO @ Sat, 11 Nov 2017 00:44:39: 17000000 INFO @ Sat, 11 Nov 2017 00:44:44: 10000000 INFO @ Sat, 11 Nov 2017 00:44:49: 18000000 INFO @ Sat, 11 Nov 2017 00:44:49: 13000000 INFO @ Sat, 11 Nov 2017 00:44:58: 19000000 INFO @ Sat, 11 Nov 2017 00:44:59: 11000000 INFO @ Sat, 11 Nov 2017 00:45:02: 14000000 INFO @ Sat, 11 Nov 2017 00:45:07: 20000000 INFO @ Sat, 11 Nov 2017 00:45:13: 15000000 INFO @ Sat, 11 Nov 2017 00:45:14: 12000000 INFO @ Sat, 11 Nov 2017 00:45:17: 21000000 INFO @ Sat, 11 Nov 2017 00:45:26: 16000000 INFO @ Sat, 11 Nov 2017 00:45:26: 22000000 INFO @ Sat, 11 Nov 2017 00:45:31: 13000000 INFO @ Sat, 11 Nov 2017 00:45:35: 23000000 INFO @ Sat, 11 Nov 2017 00:45:41: 17000000 INFO @ Sat, 11 Nov 2017 00:45:43: 14000000 INFO @ Sat, 11 Nov 2017 00:45:44: 24000000 INFO @ Sat, 11 Nov 2017 00:45:52: 15000000 INFO @ Sat, 11 Nov 2017 00:45:54: 25000000 INFO @ Sat, 11 Nov 2017 00:45:57: 18000000 INFO @ Sat, 11 Nov 2017 00:46:00: 16000000 INFO @ Sat, 11 Nov 2017 00:46:02: 26000000 INFO @ Sat, 11 Nov 2017 00:46:09: 17000000 INFO @ Sat, 11 Nov 2017 00:46:12: 27000000 INFO @ Sat, 11 Nov 2017 00:46:12: 19000000 INFO @ Sat, 11 Nov 2017 00:46:18: 18000000 INFO @ Sat, 11 Nov 2017 00:46:21: 28000000 INFO @ Sat, 11 Nov 2017 00:46:27: 19000000 INFO @ Sat, 11 Nov 2017 00:46:27: 20000000 INFO @ Sat, 11 Nov 2017 00:46:30: 29000000 INFO @ Sat, 11 Nov 2017 00:46:36: 20000000 INFO @ Sat, 11 Nov 2017 00:46:39: 30000000 INFO @ Sat, 11 Nov 2017 00:46:41: 21000000 INFO @ Sat, 11 Nov 2017 00:46:44: 21000000 INFO @ Sat, 11 Nov 2017 00:46:48: 31000000 INFO @ Sat, 11 Nov 2017 00:46:54: 22000000 INFO @ Sat, 11 Nov 2017 00:46:54: 22000000 INFO @ Sat, 11 Nov 2017 00:46:59: 32000000 INFO @ Sat, 11 Nov 2017 00:47:03: 23000000 INFO @ Sat, 11 Nov 2017 00:47:05: 23000000 INFO @ Sat, 11 Nov 2017 00:47:08: 33000000 INFO @ Sat, 11 Nov 2017 00:47:12: 24000000 INFO @ Sat, 11 Nov 2017 00:47:16: 24000000 INFO @ Sat, 11 Nov 2017 00:47:19: 34000000 INFO @ Sat, 11 Nov 2017 00:47:21: 25000000 INFO @ Sat, 11 Nov 2017 00:47:28: 25000000 INFO @ Sat, 11 Nov 2017 00:47:29: 35000000 INFO @ Sat, 11 Nov 2017 00:47:30: 26000000 INFO @ Sat, 11 Nov 2017 00:47:39: 36000000 INFO @ Sat, 11 Nov 2017 00:47:39: 26000000 INFO @ Sat, 11 Nov 2017 00:47:40: 27000000 INFO @ Sat, 11 Nov 2017 00:47:49: 37000000 INFO @ Sat, 11 Nov 2017 00:47:50: 28000000 INFO @ Sat, 11 Nov 2017 00:47:50: 27000000 INFO @ Sat, 11 Nov 2017 00:47:59: 38000000 INFO @ Sat, 11 Nov 2017 00:47:59: 29000000 INFO @ Sat, 11 Nov 2017 00:48:02: 28000000 INFO @ Sat, 11 Nov 2017 00:48:08: 30000000 INFO @ Sat, 11 Nov 2017 00:48:09: 39000000 INFO @ Sat, 11 Nov 2017 00:48:13: 29000000 INFO @ Sat, 11 Nov 2017 00:48:18: 31000000 INFO @ Sat, 11 Nov 2017 00:48:19: 40000000 INFO @ Sat, 11 Nov 2017 00:48:24: 30000000 INFO @ Sat, 11 Nov 2017 00:48:26: 32000000 INFO @ Sat, 11 Nov 2017 00:48:28: 41000000 INFO @ Sat, 11 Nov 2017 00:48:34: 31000000 INFO @ Sat, 11 Nov 2017 00:48:35: 33000000 INFO @ Sat, 11 Nov 2017 00:48:37: 42000000 INFO @ Sat, 11 Nov 2017 00:48:44: 34000000 INFO @ Sat, 11 Nov 2017 00:48:45: 32000000 INFO @ Sat, 11 Nov 2017 00:48:47: 43000000 INFO @ Sat, 11 Nov 2017 00:48:54: 35000000 INFO @ Sat, 11 Nov 2017 00:48:55: 33000000 INFO @ Sat, 11 Nov 2017 00:48:56: 44000000 INFO @ Sat, 11 Nov 2017 00:49:02: 36000000 INFO @ Sat, 11 Nov 2017 00:49:05: 45000000 INFO @ Sat, 11 Nov 2017 00:49:06: 34000000 INFO @ Sat, 11 Nov 2017 00:49:11: 37000000 INFO @ Sat, 11 Nov 2017 00:49:14: 46000000 INFO @ Sat, 11 Nov 2017 00:49:16: 35000000 INFO @ Sat, 11 Nov 2017 00:49:19: 38000000 INFO @ Sat, 11 Nov 2017 00:49:24: 47000000 INFO @ Sat, 11 Nov 2017 00:49:26: 36000000 INFO @ Sat, 11 Nov 2017 00:49:27: 39000000 INFO @ Sat, 11 Nov 2017 00:49:33: 48000000 INFO @ Sat, 11 Nov 2017 00:49:36: 40000000 INFO @ Sat, 11 Nov 2017 00:49:37: 37000000 INFO @ Sat, 11 Nov 2017 00:49:44: 49000000 INFO @ Sat, 11 Nov 2017 00:49:44: 41000000 INFO @ Sat, 11 Nov 2017 00:49:48: 38000000 INFO @ Sat, 11 Nov 2017 00:49:53: 42000000 INFO @ Sat, 11 Nov 2017 00:49:54: 50000000 INFO @ Sat, 11 Nov 2017 00:49:59: 39000000 INFO @ Sat, 11 Nov 2017 00:50:04: 51000000 INFO @ Sat, 11 Nov 2017 00:50:08: 43000000 INFO @ Sat, 11 Nov 2017 00:50:10: 40000000 INFO @ Sat, 11 Nov 2017 00:50:15: 52000000 INFO @ Sat, 11 Nov 2017 00:50:21: 41000000 INFO @ Sat, 11 Nov 2017 00:50:23: 44000000 INFO @ Sat, 11 Nov 2017 00:50:26: 53000000 INFO @ Sat, 11 Nov 2017 00:50:33: 42000000 INFO @ Sat, 11 Nov 2017 00:50:36: 54000000 INFO @ Sat, 11 Nov 2017 00:50:38: 45000000 INFO @ Sat, 11 Nov 2017 00:50:44: 43000000 INFO @ Sat, 11 Nov 2017 00:50:46: 55000000 INFO @ Sat, 11 Nov 2017 00:50:54: 46000000 INFO @ Sat, 11 Nov 2017 00:50:56: 44000000 INFO @ Sat, 11 Nov 2017 00:50:57: 56000000 INFO @ Sat, 11 Nov 2017 00:51:08: 45000000 INFO @ Sat, 11 Nov 2017 00:51:08: 57000000 INFO @ Sat, 11 Nov 2017 00:51:09: 47000000 INFO @ Sat, 11 Nov 2017 00:51:20: 58000000 INFO @ Sat, 11 Nov 2017 00:51:20: 46000000 INFO @ Sat, 11 Nov 2017 00:51:24: 48000000 INFO @ Sat, 11 Nov 2017 00:51:31: 59000000 INFO @ Sat, 11 Nov 2017 00:51:32: 47000000 INFO @ Sat, 11 Nov 2017 00:51:40: 49000000 INFO @ Sat, 11 Nov 2017 00:51:42: 60000000 INFO @ Sat, 11 Nov 2017 00:51:43: 48000000 INFO @ Sat, 11 Nov 2017 00:51:54: 61000000 INFO @ Sat, 11 Nov 2017 00:51:55: 50000000 INFO @ Sat, 11 Nov 2017 00:51:56: 49000000 INFO @ Sat, 11 Nov 2017 00:52:05: 62000000 INFO @ Sat, 11 Nov 2017 00:52:09: 51000000 INFO @ Sat, 11 Nov 2017 00:52:10: 50000000 INFO @ Sat, 11 Nov 2017 00:52:15: 63000000 INFO @ Sat, 11 Nov 2017 00:52:21: 52000000 INFO @ Sat, 11 Nov 2017 00:52:25: 51000000 INFO @ Sat, 11 Nov 2017 00:52:27: 64000000 INFO @ Sat, 11 Nov 2017 00:52:33: 53000000 INFO @ Sat, 11 Nov 2017 00:52:38: 65000000 INFO @ Sat, 11 Nov 2017 00:52:39: 52000000 INFO @ Sat, 11 Nov 2017 00:52:44: 54000000 INFO @ Sat, 11 Nov 2017 00:52:50: 66000000 INFO @ Sat, 11 Nov 2017 00:52:54: 53000000 INFO @ Sat, 11 Nov 2017 00:52:55: 55000000 INFO @ Sat, 11 Nov 2017 00:53:00: 67000000 INFO @ Sat, 11 Nov 2017 00:53:06: 56000000 INFO @ Sat, 11 Nov 2017 00:53:09: 54000000 INFO @ Sat, 11 Nov 2017 00:53:11: 68000000 INFO @ Sat, 11 Nov 2017 00:53:17: 57000000 INFO @ Sat, 11 Nov 2017 00:53:22: 69000000 INFO @ Sat, 11 Nov 2017 00:53:22: 55000000 INFO @ Sat, 11 Nov 2017 00:53:28: 58000000 INFO @ Sat, 11 Nov 2017 00:53:33: 70000000 INFO @ Sat, 11 Nov 2017 00:53:33: 56000000 INFO @ Sat, 11 Nov 2017 00:53:39: 59000000 INFO @ Sat, 11 Nov 2017 00:53:44: 71000000 INFO @ Sat, 11 Nov 2017 00:53:46: 57000000 INFO @ Sat, 11 Nov 2017 00:53:50: 60000000 INFO @ Sat, 11 Nov 2017 00:53:55: 72000000 INFO @ Sat, 11 Nov 2017 00:53:58: 58000000 INFO @ Sat, 11 Nov 2017 00:54:01: 61000000 INFO @ Sat, 11 Nov 2017 00:54:06: 73000000 INFO @ Sat, 11 Nov 2017 00:54:09: 59000000 INFO @ Sat, 11 Nov 2017 00:54:12: 62000000 INFO @ Sat, 11 Nov 2017 00:54:18: 74000000 INFO @ Sat, 11 Nov 2017 00:54:22: 60000000 INFO @ Sat, 11 Nov 2017 00:54:24: 63000000 INFO @ Sat, 11 Nov 2017 00:54:29: 75000000 INFO @ Sat, 11 Nov 2017 00:54:33: 61000000 INFO @ Sat, 11 Nov 2017 00:54:35: 64000000 INFO @ Sat, 11 Nov 2017 00:54:41: 76000000 INFO @ Sat, 11 Nov 2017 00:54:45: 62000000 INFO @ Sat, 11 Nov 2017 00:54:46: 65000000 INFO @ Sat, 11 Nov 2017 00:54:52: 77000000 INFO @ Sat, 11 Nov 2017 00:54:58: 66000000 INFO @ Sat, 11 Nov 2017 00:54:58: 63000000 INFO @ Sat, 11 Nov 2017 00:55:03: 78000000 INFO @ Sat, 11 Nov 2017 00:55:09: 67000000 INFO @ Sat, 11 Nov 2017 00:55:09: 64000000 INFO @ Sat, 11 Nov 2017 00:55:14: 79000000 INFO @ Sat, 11 Nov 2017 00:55:20: 68000000 INFO @ Sat, 11 Nov 2017 00:55:21: 65000000 INFO @ Sat, 11 Nov 2017 00:55:25: 80000000 INFO @ Sat, 11 Nov 2017 00:55:30: 69000000 INFO @ Sat, 11 Nov 2017 00:55:33: 66000000 INFO @ Sat, 11 Nov 2017 00:55:35: 81000000 INFO @ Sat, 11 Nov 2017 00:55:41: 70000000 INFO @ Sat, 11 Nov 2017 00:55:45: 67000000 INFO @ Sat, 11 Nov 2017 00:55:46: 82000000 INFO @ Sat, 11 Nov 2017 00:55:51: 71000000 INFO @ Sat, 11 Nov 2017 00:55:57: 83000000 INFO @ Sat, 11 Nov 2017 00:55:57: 68000000 INFO @ Sat, 11 Nov 2017 00:56:02: 72000000 INFO @ Sat, 11 Nov 2017 00:56:07: 84000000 INFO @ Sat, 11 Nov 2017 00:56:09: 69000000 INFO @ Sat, 11 Nov 2017 00:56:13: 73000000 INFO @ Sat, 11 Nov 2017 00:56:18: 85000000 INFO @ Sat, 11 Nov 2017 00:56:20: 70000000 INFO @ Sat, 11 Nov 2017 00:56:23: 74000000 INFO @ Sat, 11 Nov 2017 00:56:32: 75000000 INFO @ Sat, 11 Nov 2017 00:56:33: 71000000 INFO @ Sat, 11 Nov 2017 00:56:33: 86000000 INFO @ Sat, 11 Nov 2017 00:56:40: 76000000 INFO @ Sat, 11 Nov 2017 00:56:45: 72000000 INFO @ Sat, 11 Nov 2017 00:56:49: 77000000 INFO @ Sat, 11 Nov 2017 00:56:50: 87000000 INFO @ Sat, 11 Nov 2017 00:56:57: 73000000 INFO @ Sat, 11 Nov 2017 00:56:58: 78000000 INFO @ Sat, 11 Nov 2017 00:57:07: 79000000 INFO @ Sat, 11 Nov 2017 00:57:08: 88000000 INFO @ Sat, 11 Nov 2017 00:57:09: 74000000 INFO @ Sat, 11 Nov 2017 00:57:16: 80000000 INFO @ Sat, 11 Nov 2017 00:57:22: 75000000 INFO @ Sat, 11 Nov 2017 00:57:25: 81000000 INFO @ Sat, 11 Nov 2017 00:57:25: 89000000 INFO @ Sat, 11 Nov 2017 00:57:33: 82000000 INFO @ Sat, 11 Nov 2017 00:57:35: 76000000 INFO @ Sat, 11 Nov 2017 00:57:42: 83000000 INFO @ Sat, 11 Nov 2017 00:57:43: 90000000 INFO @ Sat, 11 Nov 2017 00:57:47: 77000000 INFO @ Sat, 11 Nov 2017 00:57:51: 84000000 INFO @ Sat, 11 Nov 2017 00:58:00: 85000000 INFO @ Sat, 11 Nov 2017 00:58:00: 78000000 INFO @ Sat, 11 Nov 2017 00:58:01: 91000000 INFO @ Sat, 11 Nov 2017 00:58:09: 86000000 INFO @ Sat, 11 Nov 2017 00:58:13: 79000000 INFO @ Sat, 11 Nov 2017 00:58:17: 87000000 INFO @ Sat, 11 Nov 2017 00:58:18: 92000000 INFO @ Sat, 11 Nov 2017 00:58:26: 88000000 INFO @ Sat, 11 Nov 2017 00:58:27: 80000000 INFO @ Sat, 11 Nov 2017 00:58:34: 89000000 INFO @ Sat, 11 Nov 2017 00:58:35: 93000000 INFO @ Sat, 11 Nov 2017 00:58:39: 81000000 INFO @ Sat, 11 Nov 2017 00:58:43: 90000000 INFO @ Sat, 11 Nov 2017 00:58:51: 91000000 INFO @ Sat, 11 Nov 2017 00:58:54: 94000000 INFO @ Sat, 11 Nov 2017 00:58:59: 82000000 INFO @ Sat, 11 Nov 2017 00:58:59: 92000000 INFO @ Sat, 11 Nov 2017 00:59:08: 93000000 INFO @ Sat, 11 Nov 2017 00:59:14: 95000000 INFO @ Sat, 11 Nov 2017 00:59:16: 94000000 INFO @ Sat, 11 Nov 2017 00:59:19: 83000000 INFO @ Sat, 11 Nov 2017 00:59:24: 95000000 INFO @ Sat, 11 Nov 2017 00:59:32: 96000000 INFO @ Sat, 11 Nov 2017 00:59:33: 96000000 INFO @ Sat, 11 Nov 2017 00:59:37: 84000000 INFO @ Sat, 11 Nov 2017 00:59:41: 97000000 INFO @ Sat, 11 Nov 2017 00:59:46: 97000000 INFO @ Sat, 11 Nov 2017 00:59:50: 98000000 INFO @ Sat, 11 Nov 2017 00:59:51: 85000000 INFO @ Sat, 11 Nov 2017 00:59:59: 99000000 INFO @ Sat, 11 Nov 2017 01:00:01: 98000000 INFO @ Sat, 11 Nov 2017 01:00:04: 86000000 INFO @ Sat, 11 Nov 2017 01:00:07: 100000000 INFO @ Sat, 11 Nov 2017 01:00:14: 87000000 INFO @ Sat, 11 Nov 2017 01:00:14: 99000000 INFO @ Sat, 11 Nov 2017 01:00:16: 101000000 INFO @ Sat, 11 Nov 2017 01:00:24: 88000000 INFO @ Sat, 11 Nov 2017 01:00:25: 102000000 INFO @ Sat, 11 Nov 2017 01:00:28: 100000000 INFO @ Sat, 11 Nov 2017 01:00:33: 103000000 INFO @ Sat, 11 Nov 2017 01:00:34: 89000000 INFO @ Sat, 11 Nov 2017 01:00:42: 101000000 INFO @ Sat, 11 Nov 2017 01:00:42: 104000000 INFO @ Sat, 11 Nov 2017 01:00:44: 90000000 INFO @ Sat, 11 Nov 2017 01:00:52: 105000000 INFO @ Sat, 11 Nov 2017 01:00:54: 91000000 INFO @ Sat, 11 Nov 2017 01:00:57: 102000000 INFO @ Sat, 11 Nov 2017 01:01:01: 106000000 INFO @ Sat, 11 Nov 2017 01:01:03: 92000000 INFO @ Sat, 11 Nov 2017 01:01:10: 107000000 INFO @ Sat, 11 Nov 2017 01:01:12: 103000000 INFO @ Sat, 11 Nov 2017 01:01:13: 93000000 INFO @ Sat, 11 Nov 2017 01:01:19: 108000000 INFO @ Sat, 11 Nov 2017 01:01:23: 94000000 INFO @ Sat, 11 Nov 2017 01:01:28: 109000000 INFO @ Sat, 11 Nov 2017 01:01:31: 104000000 INFO @ Sat, 11 Nov 2017 01:01:33: 95000000 INFO @ Sat, 11 Nov 2017 01:01:37: 110000000 INFO @ Sat, 11 Nov 2017 01:01:43: 96000000 INFO @ Sat, 11 Nov 2017 01:01:45: 105000000 INFO @ Sat, 11 Nov 2017 01:01:49: 111000000 INFO @ Sat, 11 Nov 2017 01:01:53: 97000000 INFO @ Sat, 11 Nov 2017 01:01:57: 106000000 INFO @ Sat, 11 Nov 2017 01:02:01: 112000000 INFO @ Sat, 11 Nov 2017 01:02:03: 98000000 INFO @ Sat, 11 Nov 2017 01:02:11: 107000000 INFO @ Sat, 11 Nov 2017 01:02:13: 99000000 INFO @ Sat, 11 Nov 2017 01:02:14: 113000000 INFO @ Sat, 11 Nov 2017 01:02:24: 100000000 INFO @ Sat, 11 Nov 2017 01:02:26: 108000000 INFO @ Sat, 11 Nov 2017 01:02:27: 114000000 INFO @ Sat, 11 Nov 2017 01:02:34: 101000000 INFO @ Sat, 11 Nov 2017 01:02:38: 109000000 INFO @ Sat, 11 Nov 2017 01:02:39: 115000000 INFO @ Sat, 11 Nov 2017 01:02:43: 102000000 INFO @ Sat, 11 Nov 2017 01:02:52: 116000000 INFO @ Sat, 11 Nov 2017 01:02:52: 110000000 INFO @ Sat, 11 Nov 2017 01:02:55: 103000000 INFO @ Sat, 11 Nov 2017 01:03:05: 104000000 INFO @ Sat, 11 Nov 2017 01:03:05: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 01:03:05: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 01:03:05: #1 total tags in treatment: 116843685 INFO @ Sat, 11 Nov 2017 01:03:05: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 01:03:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 01:03:07: 111000000 INFO @ Sat, 11 Nov 2017 01:03:09: #1 tags after filtering in treatment: 116843667 INFO @ Sat, 11 Nov 2017 01:03:09: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 01:03:09: #1 finished! INFO @ Sat, 11 Nov 2017 01:03:09: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 01:03:09: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 01:03:15: 105000000 INFO @ Sat, 11 Nov 2017 01:03:20: #2 number of paired peaks: 5482 INFO @ Sat, 11 Nov 2017 01:03:20: start model_add_line... INFO @ Sat, 11 Nov 2017 01:03:22: 112000000 INFO @ Sat, 11 Nov 2017 01:03:23: start X-correlation... INFO @ Sat, 11 Nov 2017 01:03:23: end of X-cor INFO @ Sat, 11 Nov 2017 01:03:23: #2 finished! INFO @ Sat, 11 Nov 2017 01:03:23: #2 predicted fragment length is 49 bps INFO @ Sat, 11 Nov 2017 01:03:23: #2 alternative fragment length(s) may be 49 bps INFO @ Sat, 11 Nov 2017 01:03:23: #2.2 Generate R script for model : SRX1068224.20_model.r WARNING @ Sat, 11 Nov 2017 01:03:23: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 01:03:23: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Sat, 11 Nov 2017 01:03:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 01:03:23: #3 Call peaks... INFO @ Sat, 11 Nov 2017 01:03:23: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 01:03:25: 106000000 INFO @ Sat, 11 Nov 2017 01:03:35: 107000000 INFO @ Sat, 11 Nov 2017 01:03:36: 113000000 INFO @ Sat, 11 Nov 2017 01:03:47: 108000000 INFO @ Sat, 11 Nov 2017 01:03:53: 114000000 INFO @ Sat, 11 Nov 2017 01:04:02: 109000000 INFO @ Sat, 11 Nov 2017 01:04:06: 115000000 INFO @ Sat, 11 Nov 2017 01:04:17: 110000000 INFO @ Sat, 11 Nov 2017 01:04:21: 116000000 INFO @ Sat, 11 Nov 2017 01:04:31: 111000000 INFO @ Sat, 11 Nov 2017 01:04:38: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 01:04:38: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 01:04:38: #1 total tags in treatment: 116843685 INFO @ Sat, 11 Nov 2017 01:04:38: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 01:04:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 01:04:42: 112000000 INFO @ Sat, 11 Nov 2017 01:04:42: #1 tags after filtering in treatment: 116843667 INFO @ Sat, 11 Nov 2017 01:04:42: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 01:04:42: #1 finished! INFO @ Sat, 11 Nov 2017 01:04:42: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 01:04:42: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 01:04:53: 113000000 INFO @ Sat, 11 Nov 2017 01:04:54: #2 number of paired peaks: 5482 INFO @ Sat, 11 Nov 2017 01:04:54: start model_add_line... INFO @ Sat, 11 Nov 2017 01:04:56: start X-correlation... INFO @ Sat, 11 Nov 2017 01:04:56: end of X-cor INFO @ Sat, 11 Nov 2017 01:04:56: #2 finished! INFO @ Sat, 11 Nov 2017 01:04:56: #2 predicted fragment length is 49 bps INFO @ Sat, 11 Nov 2017 01:04:56: #2 alternative fragment length(s) may be 49 bps INFO @ Sat, 11 Nov 2017 01:04:56: #2.2 Generate R script for model : SRX1068224.10_model.r WARNING @ Sat, 11 Nov 2017 01:04:56: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 01:04:56: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Sat, 11 Nov 2017 01:04:56: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 01:04:56: #3 Call peaks... INFO @ Sat, 11 Nov 2017 01:04:56: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 01:05:04: 114000000 INFO @ Sat, 11 Nov 2017 01:05:14: 115000000 INFO @ Sat, 11 Nov 2017 01:05:26: 116000000 INFO @ Sat, 11 Nov 2017 01:05:36: #1 tag size is determined as 50 bps INFO @ Sat, 11 Nov 2017 01:05:36: #1 tag size = 50 INFO @ Sat, 11 Nov 2017 01:05:36: #1 total tags in treatment: 116843685 INFO @ Sat, 11 Nov 2017 01:05:36: #1 user defined the maximum tags... INFO @ Sat, 11 Nov 2017 01:05:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Nov 2017 01:05:40: #1 tags after filtering in treatment: 116843667 INFO @ Sat, 11 Nov 2017 01:05:40: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 11 Nov 2017 01:05:40: #1 finished! INFO @ Sat, 11 Nov 2017 01:05:40: #2 Build Peak Model... INFO @ Sat, 11 Nov 2017 01:05:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Nov 2017 01:05:52: #2 number of paired peaks: 5482 INFO @ Sat, 11 Nov 2017 01:05:52: start model_add_line... INFO @ Sat, 11 Nov 2017 01:05:54: start X-correlation... INFO @ Sat, 11 Nov 2017 01:05:54: end of X-cor INFO @ Sat, 11 Nov 2017 01:05:54: #2 finished! INFO @ Sat, 11 Nov 2017 01:05:54: #2 predicted fragment length is 49 bps INFO @ Sat, 11 Nov 2017 01:05:54: #2 alternative fragment length(s) may be 49 bps INFO @ Sat, 11 Nov 2017 01:05:54: #2.2 Generate R script for model : SRX1068224.05_model.r WARNING @ Sat, 11 Nov 2017 01:05:54: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Nov 2017 01:05:54: #2 You may need to consider one of the other alternative d(s): 49 WARNING @ Sat, 11 Nov 2017 01:05:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Nov 2017 01:05:54: #3 Call peaks... INFO @ Sat, 11 Nov 2017 01:05:54: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Nov 2017 01:09:25: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 01:10:54: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 01:11:37: #3 Call peaks for each chromosome... INFO @ Sat, 11 Nov 2017 01:13:03: #4 Write output xls file... SRX1068224.20_peaks.xls INFO @ Sat, 11 Nov 2017 01:13:03: #4 Write peak in narrowPeak format file... SRX1068224.20_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 01:13:03: #4 Write summits bed file... SRX1068224.20_summits.bed INFO @ Sat, 11 Nov 2017 01:13:03: Done! pass1 - making usageList (40 chroms): 2 millis pass2 - checking and writing primary data (959 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 01:14:40: #4 Write output xls file... SRX1068224.10_peaks.xls INFO @ Sat, 11 Nov 2017 01:14:40: #4 Write peak in narrowPeak format file... SRX1068224.10_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 01:14:41: #4 Write summits bed file... SRX1068224.10_summits.bed INFO @ Sat, 11 Nov 2017 01:14:41: Done! pass1 - making usageList (59 chroms): 2 millis pass2 - checking and writing primary data (2287 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 11 Nov 2017 01:14:57: #4 Write output xls file... SRX1068224.05_peaks.xls INFO @ Sat, 11 Nov 2017 01:14:57: #4 Write peak in narrowPeak format file... SRX1068224.05_peaks.narrowPeak INFO @ Sat, 11 Nov 2017 01:14:57: #4 Write summits bed file... SRX1068224.05_summits.bed INFO @ Sat, 11 Nov 2017 01:14:57: Done! pass1 - making usageList (77 chroms): 3 millis pass2 - checking and writing primary data (4671 records, 4 fields): 23 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。