Job ID = 10223662 SRX = ERX2745137 Genome = rn6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-10-15T20:26:55 prefetch.2.10.7: 1) Downloading 'ERR2731912'... 2020-10-15T20:26:55 prefetch.2.10.7: Downloading via HTTPS... 2020-10-15T20:29:12 prefetch.2.10.7: HTTPS download succeed 2020-10-15T20:29:12 prefetch.2.10.7: 1) 'ERR2731912' was downloaded successfully Read 102255744 spots for ERR2731912/ERR2731912.sra Written 102255744 spots for ERR2731912/ERR2731912.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:02 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:02 Multiseed full-index search: 01:14:12 102255744 reads; of these: 102255744 (100.00%) were unpaired; of these: 3926370 (3.84%) aligned 0 times 69201536 (67.67%) aligned exactly 1 time 29127838 (28.49%) aligned >1 times 96.16% overall alignment rate Time searching: 01:14:20 Overall time: 01:14:20 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 44 files... [bam_rmdupse_core] 28751911 / 98329374 = 0.2924 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:04:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:04:25: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:04:25: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:04:31: 1000000 INFO @ Fri, 16 Oct 2020 07:04:37: 2000000 INFO @ Fri, 16 Oct 2020 07:04:43: 3000000 INFO @ Fri, 16 Oct 2020 07:04:49: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:04:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:04:55: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:04:55: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:04:55: 5000000 INFO @ Fri, 16 Oct 2020 07:05:01: 1000000 INFO @ Fri, 16 Oct 2020 07:05:01: 6000000 INFO @ Fri, 16 Oct 2020 07:05:07: 2000000 INFO @ Fri, 16 Oct 2020 07:05:08: 7000000 INFO @ Fri, 16 Oct 2020 07:05:14: 3000000 INFO @ Fri, 16 Oct 2020 07:05:14: 8000000 INFO @ Fri, 16 Oct 2020 07:05:20: 4000000 INFO @ Fri, 16 Oct 2020 07:05:20: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 07:05:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 07:05:25: #1 read tag files... INFO @ Fri, 16 Oct 2020 07:05:25: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 07:05:26: 5000000 INFO @ Fri, 16 Oct 2020 07:05:27: 10000000 INFO @ Fri, 16 Oct 2020 07:05:31: 1000000 INFO @ Fri, 16 Oct 2020 07:05:32: 6000000 INFO @ Fri, 16 Oct 2020 07:05:33: 11000000 INFO @ Fri, 16 Oct 2020 07:05:37: 2000000 INFO @ Fri, 16 Oct 2020 07:05:39: 7000000 INFO @ Fri, 16 Oct 2020 07:05:40: 12000000 INFO @ Fri, 16 Oct 2020 07:05:43: 3000000 INFO @ Fri, 16 Oct 2020 07:05:45: 8000000 INFO @ Fri, 16 Oct 2020 07:05:46: 13000000 INFO @ Fri, 16 Oct 2020 07:05:49: 4000000 INFO @ Fri, 16 Oct 2020 07:05:51: 9000000 INFO @ Fri, 16 Oct 2020 07:05:53: 14000000 INFO @ Fri, 16 Oct 2020 07:05:56: 5000000 INFO @ Fri, 16 Oct 2020 07:05:57: 10000000 INFO @ Fri, 16 Oct 2020 07:05:59: 15000000 INFO @ Fri, 16 Oct 2020 07:06:02: 6000000 INFO @ Fri, 16 Oct 2020 07:06:04: 11000000 INFO @ Fri, 16 Oct 2020 07:06:05: 16000000 INFO @ Fri, 16 Oct 2020 07:06:09: 7000000 INFO @ Fri, 16 Oct 2020 07:06:10: 12000000 INFO @ Fri, 16 Oct 2020 07:06:12: 17000000 INFO @ Fri, 16 Oct 2020 07:06:15: 8000000 INFO @ Fri, 16 Oct 2020 07:06:16: 13000000 INFO @ Fri, 16 Oct 2020 07:06:18: 18000000 INFO @ Fri, 16 Oct 2020 07:06:21: 9000000 INFO @ Fri, 16 Oct 2020 07:06:23: 14000000 INFO @ Fri, 16 Oct 2020 07:06:25: 19000000 INFO @ Fri, 16 Oct 2020 07:06:28: 10000000 INFO @ Fri, 16 Oct 2020 07:06:29: 15000000 INFO @ Fri, 16 Oct 2020 07:06:31: 20000000 INFO @ Fri, 16 Oct 2020 07:06:34: 11000000 INFO @ Fri, 16 Oct 2020 07:06:35: 16000000 INFO @ Fri, 16 Oct 2020 07:06:37: 21000000 INFO @ Fri, 16 Oct 2020 07:06:40: 12000000 INFO @ Fri, 16 Oct 2020 07:06:42: 17000000 INFO @ Fri, 16 Oct 2020 07:06:44: 22000000 INFO @ Fri, 16 Oct 2020 07:06:47: 13000000 INFO @ Fri, 16 Oct 2020 07:06:48: 18000000 INFO @ Fri, 16 Oct 2020 07:06:50: 23000000 INFO @ Fri, 16 Oct 2020 07:06:53: 14000000 INFO @ Fri, 16 Oct 2020 07:06:54: 19000000 INFO @ Fri, 16 Oct 2020 07:06:57: 24000000 INFO @ Fri, 16 Oct 2020 07:06:59: 15000000 INFO @ Fri, 16 Oct 2020 07:07:01: 20000000 INFO @ Fri, 16 Oct 2020 07:07:03: 25000000 INFO @ Fri, 16 Oct 2020 07:07:06: 16000000 INFO @ Fri, 16 Oct 2020 07:07:07: 21000000 INFO @ Fri, 16 Oct 2020 07:07:10: 26000000 INFO @ Fri, 16 Oct 2020 07:07:12: 17000000 INFO @ Fri, 16 Oct 2020 07:07:13: 22000000 INFO @ Fri, 16 Oct 2020 07:07:16: 27000000 INFO @ Fri, 16 Oct 2020 07:07:18: 18000000 INFO @ Fri, 16 Oct 2020 07:07:20: 23000000 INFO @ Fri, 16 Oct 2020 07:07:22: 28000000 INFO @ Fri, 16 Oct 2020 07:07:25: 19000000 INFO @ Fri, 16 Oct 2020 07:07:26: 24000000 INFO @ Fri, 16 Oct 2020 07:07:29: 29000000 INFO @ Fri, 16 Oct 2020 07:07:31: 20000000 INFO @ Fri, 16 Oct 2020 07:07:32: 25000000 INFO @ Fri, 16 Oct 2020 07:07:35: 30000000 INFO @ Fri, 16 Oct 2020 07:07:37: 21000000 INFO @ Fri, 16 Oct 2020 07:07:39: 26000000 INFO @ Fri, 16 Oct 2020 07:07:42: 31000000 INFO @ Fri, 16 Oct 2020 07:07:44: 22000000 INFO @ Fri, 16 Oct 2020 07:07:45: 27000000 INFO @ Fri, 16 Oct 2020 07:07:48: 32000000 INFO @ Fri, 16 Oct 2020 07:07:50: 23000000 INFO @ Fri, 16 Oct 2020 07:07:51: 28000000 INFO @ Fri, 16 Oct 2020 07:07:55: 33000000 INFO @ Fri, 16 Oct 2020 07:07:56: 24000000 INFO @ Fri, 16 Oct 2020 07:07:58: 29000000 INFO @ Fri, 16 Oct 2020 07:08:01: 34000000 INFO @ Fri, 16 Oct 2020 07:08:03: 25000000 INFO @ Fri, 16 Oct 2020 07:08:04: 30000000 INFO @ Fri, 16 Oct 2020 07:08:08: 35000000 INFO @ Fri, 16 Oct 2020 07:08:09: 26000000 INFO @ Fri, 16 Oct 2020 07:08:10: 31000000 INFO @ Fri, 16 Oct 2020 07:08:14: 36000000 INFO @ Fri, 16 Oct 2020 07:08:16: 27000000 INFO @ Fri, 16 Oct 2020 07:08:16: 32000000 INFO @ Fri, 16 Oct 2020 07:08:20: 37000000 INFO @ Fri, 16 Oct 2020 07:08:22: 28000000 INFO @ Fri, 16 Oct 2020 07:08:23: 33000000 INFO @ Fri, 16 Oct 2020 07:08:27: 38000000 INFO @ Fri, 16 Oct 2020 07:08:28: 29000000 INFO @ Fri, 16 Oct 2020 07:08:29: 34000000 INFO @ Fri, 16 Oct 2020 07:08:33: 39000000 INFO @ Fri, 16 Oct 2020 07:08:34: 30000000 INFO @ Fri, 16 Oct 2020 07:08:35: 35000000 INFO @ Fri, 16 Oct 2020 07:08:40: 40000000 INFO @ Fri, 16 Oct 2020 07:08:41: 31000000 INFO @ Fri, 16 Oct 2020 07:08:42: 36000000 INFO @ Fri, 16 Oct 2020 07:08:46: 41000000 INFO @ Fri, 16 Oct 2020 07:08:47: 32000000 INFO @ Fri, 16 Oct 2020 07:08:48: 37000000 INFO @ Fri, 16 Oct 2020 07:08:52: 42000000 INFO @ Fri, 16 Oct 2020 07:08:53: 33000000 INFO @ Fri, 16 Oct 2020 07:08:54: 38000000 INFO @ Fri, 16 Oct 2020 07:08:58: 43000000 INFO @ Fri, 16 Oct 2020 07:09:00: 34000000 INFO @ Fri, 16 Oct 2020 07:09:01: 39000000 INFO @ Fri, 16 Oct 2020 07:09:05: 44000000 INFO @ Fri, 16 Oct 2020 07:09:06: 35000000 INFO @ Fri, 16 Oct 2020 07:09:07: 40000000 INFO @ Fri, 16 Oct 2020 07:09:11: 45000000 INFO @ Fri, 16 Oct 2020 07:09:12: 36000000 INFO @ Fri, 16 Oct 2020 07:09:13: 41000000 INFO @ Fri, 16 Oct 2020 07:09:18: 46000000 INFO @ Fri, 16 Oct 2020 07:09:18: 37000000 INFO @ Fri, 16 Oct 2020 07:09:19: 42000000 INFO @ Fri, 16 Oct 2020 07:09:24: 47000000 INFO @ Fri, 16 Oct 2020 07:09:25: 38000000 INFO @ Fri, 16 Oct 2020 07:09:25: 43000000 INFO @ Fri, 16 Oct 2020 07:09:31: 48000000 INFO @ Fri, 16 Oct 2020 07:09:31: 39000000 INFO @ Fri, 16 Oct 2020 07:09:32: 44000000 INFO @ Fri, 16 Oct 2020 07:09:37: 49000000 INFO @ Fri, 16 Oct 2020 07:09:37: 40000000 INFO @ Fri, 16 Oct 2020 07:09:38: 45000000 INFO @ Fri, 16 Oct 2020 07:09:43: 41000000 INFO @ Fri, 16 Oct 2020 07:09:44: 50000000 INFO @ Fri, 16 Oct 2020 07:09:44: 46000000 INFO @ Fri, 16 Oct 2020 07:09:50: 42000000 INFO @ Fri, 16 Oct 2020 07:09:50: 51000000 INFO @ Fri, 16 Oct 2020 07:09:50: 47000000 INFO @ Fri, 16 Oct 2020 07:09:56: 43000000 INFO @ Fri, 16 Oct 2020 07:09:57: 52000000 INFO @ Fri, 16 Oct 2020 07:09:57: 48000000 INFO @ Fri, 16 Oct 2020 07:10:02: 44000000 INFO @ Fri, 16 Oct 2020 07:10:03: 53000000 INFO @ Fri, 16 Oct 2020 07:10:03: 49000000 INFO @ Fri, 16 Oct 2020 07:10:09: 45000000 INFO @ Fri, 16 Oct 2020 07:10:09: 54000000 INFO @ Fri, 16 Oct 2020 07:10:10: 50000000 INFO @ Fri, 16 Oct 2020 07:10:15: 46000000 INFO @ Fri, 16 Oct 2020 07:10:16: 51000000 INFO @ Fri, 16 Oct 2020 07:10:16: 55000000 INFO @ Fri, 16 Oct 2020 07:10:21: 47000000 INFO @ Fri, 16 Oct 2020 07:10:22: 52000000 INFO @ Fri, 16 Oct 2020 07:10:22: 56000000 INFO @ Fri, 16 Oct 2020 07:10:27: 48000000 INFO @ Fri, 16 Oct 2020 07:10:28: 53000000 INFO @ Fri, 16 Oct 2020 07:10:29: 57000000 INFO @ Fri, 16 Oct 2020 07:10:34: 49000000 INFO @ Fri, 16 Oct 2020 07:10:34: 58000000 INFO @ Fri, 16 Oct 2020 07:10:35: 54000000 INFO @ Fri, 16 Oct 2020 07:10:40: 50000000 INFO @ Fri, 16 Oct 2020 07:10:41: 59000000 INFO @ Fri, 16 Oct 2020 07:10:41: 55000000 INFO @ Fri, 16 Oct 2020 07:10:46: 51000000 INFO @ Fri, 16 Oct 2020 07:10:47: 60000000 INFO @ Fri, 16 Oct 2020 07:10:47: 56000000 INFO @ Fri, 16 Oct 2020 07:10:53: 52000000 INFO @ Fri, 16 Oct 2020 07:10:54: 61000000 INFO @ Fri, 16 Oct 2020 07:10:54: 57000000 INFO @ Fri, 16 Oct 2020 07:10:59: 53000000 INFO @ Fri, 16 Oct 2020 07:10:59: 58000000 INFO @ Fri, 16 Oct 2020 07:11:00: 62000000 INFO @ Fri, 16 Oct 2020 07:11:05: 54000000 INFO @ Fri, 16 Oct 2020 07:11:05: 59000000 INFO @ Fri, 16 Oct 2020 07:11:07: 63000000 INFO @ Fri, 16 Oct 2020 07:11:12: 55000000 INFO @ Fri, 16 Oct 2020 07:11:12: 60000000 INFO @ Fri, 16 Oct 2020 07:11:13: 64000000 INFO @ Fri, 16 Oct 2020 07:11:18: 56000000 INFO @ Fri, 16 Oct 2020 07:11:18: 61000000 INFO @ Fri, 16 Oct 2020 07:11:20: 65000000 INFO @ Fri, 16 Oct 2020 07:11:25: 62000000 INFO @ Fri, 16 Oct 2020 07:11:25: 57000000 INFO @ Fri, 16 Oct 2020 07:11:26: 66000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 07:11:31: 58000000 INFO @ Fri, 16 Oct 2020 07:11:31: 63000000 INFO @ Fri, 16 Oct 2020 07:11:33: 67000000 INFO @ Fri, 16 Oct 2020 07:11:37: 59000000 INFO @ Fri, 16 Oct 2020 07:11:37: 64000000 INFO @ Fri, 16 Oct 2020 07:11:39: 68000000 INFO @ Fri, 16 Oct 2020 07:11:43: 60000000 INFO @ Fri, 16 Oct 2020 07:11:44: 65000000 INFO @ Fri, 16 Oct 2020 07:11:46: 69000000 INFO @ Fri, 16 Oct 2020 07:11:50: 61000000 INFO @ Fri, 16 Oct 2020 07:11:50: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:11:50: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:11:50: #1 total tags in treatment: 69577463 INFO @ Fri, 16 Oct 2020 07:11:50: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:11:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:11:50: 66000000 INFO @ Fri, 16 Oct 2020 07:11:51: #1 tags after filtering in treatment: 69577437 INFO @ Fri, 16 Oct 2020 07:11:51: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:11:51: #1 finished! INFO @ Fri, 16 Oct 2020 07:11:51: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:11:51: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:11:56: 62000000 INFO @ Fri, 16 Oct 2020 07:11:57: 67000000 INFO @ Fri, 16 Oct 2020 07:11:57: #2 number of paired peaks: 6276 INFO @ Fri, 16 Oct 2020 07:11:57: start model_add_line... INFO @ Fri, 16 Oct 2020 07:11:58: start X-correlation... INFO @ Fri, 16 Oct 2020 07:11:58: end of X-cor INFO @ Fri, 16 Oct 2020 07:11:58: #2 finished! INFO @ Fri, 16 Oct 2020 07:11:58: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:11:58: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 07:11:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.05_model.r WARNING @ Fri, 16 Oct 2020 07:11:58: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:11:58: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 07:11:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:11:58: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:11:58: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:12:02: 63000000 INFO @ Fri, 16 Oct 2020 07:12:03: 68000000 INFO @ Fri, 16 Oct 2020 07:12:09: 64000000 INFO @ Fri, 16 Oct 2020 07:12:09: 69000000 INFO @ Fri, 16 Oct 2020 07:12:13: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:12:13: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:12:13: #1 total tags in treatment: 69577463 INFO @ Fri, 16 Oct 2020 07:12:13: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:12:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:12:15: #1 tags after filtering in treatment: 69577437 INFO @ Fri, 16 Oct 2020 07:12:15: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:12:15: #1 finished! INFO @ Fri, 16 Oct 2020 07:12:15: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:12:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:12:15: 65000000 INFO @ Fri, 16 Oct 2020 07:12:20: #2 number of paired peaks: 6276 INFO @ Fri, 16 Oct 2020 07:12:20: start model_add_line... INFO @ Fri, 16 Oct 2020 07:12:20: start X-correlation... INFO @ Fri, 16 Oct 2020 07:12:20: end of X-cor INFO @ Fri, 16 Oct 2020 07:12:20: #2 finished! INFO @ Fri, 16 Oct 2020 07:12:20: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:12:20: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 07:12:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.10_model.r WARNING @ Fri, 16 Oct 2020 07:12:20: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:12:20: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 07:12:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:12:20: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:12:20: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 16 Oct 2020 07:12:21: 66000000 INFO @ Fri, 16 Oct 2020 07:12:27: 67000000 INFO @ Fri, 16 Oct 2020 07:12:33: 68000000 INFO @ Fri, 16 Oct 2020 07:12:38: 69000000 INFO @ Fri, 16 Oct 2020 07:12:42: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 07:12:42: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 07:12:42: #1 total tags in treatment: 69577463 INFO @ Fri, 16 Oct 2020 07:12:42: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 07:12:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 07:12:43: #1 tags after filtering in treatment: 69577437 INFO @ Fri, 16 Oct 2020 07:12:43: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 07:12:43: #1 finished! INFO @ Fri, 16 Oct 2020 07:12:43: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 07:12:43: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 07:12:49: #2 number of paired peaks: 6276 INFO @ Fri, 16 Oct 2020 07:12:49: start model_add_line... INFO @ Fri, 16 Oct 2020 07:12:49: start X-correlation... INFO @ Fri, 16 Oct 2020 07:12:49: end of X-cor INFO @ Fri, 16 Oct 2020 07:12:49: #2 finished! INFO @ Fri, 16 Oct 2020 07:12:49: #2 predicted fragment length is 50 bps INFO @ Fri, 16 Oct 2020 07:12:49: #2 alternative fragment length(s) may be 50 bps INFO @ Fri, 16 Oct 2020 07:12:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.20_model.r WARNING @ Fri, 16 Oct 2020 07:12:49: #2 Since the d (50) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 16 Oct 2020 07:12:49: #2 You may need to consider one of the other alternative d(s): 50 WARNING @ Fri, 16 Oct 2020 07:12:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 16 Oct 2020 07:12:49: #3 Call peaks... INFO @ Fri, 16 Oct 2020 07:12:49: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 07:14:32: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:14:48: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:15:19: #3 Call peaks for each chromosome... INFO @ Fri, 16 Oct 2020 07:15:57: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.05_peaks.xls INFO @ Fri, 16 Oct 2020 07:15:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.05_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:15:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.05_summits.bed INFO @ Fri, 16 Oct 2020 07:15:57: Done! pass1 - making usageList (75 chroms): 1 millis pass2 - checking and writing primary data (3586 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:16:14: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.10_peaks.xls INFO @ Fri, 16 Oct 2020 07:16:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.10_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:16:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.10_summits.bed INFO @ Fri, 16 Oct 2020 07:16:14: Done! pass1 - making usageList (58 chroms): 1 millis pass2 - checking and writing primary data (1847 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 16 Oct 2020 07:16:42: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.20_peaks.xls INFO @ Fri, 16 Oct 2020 07:16:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.20_peaks.narrowPeak INFO @ Fri, 16 Oct 2020 07:16:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX2745137/ERX2745137.20_summits.bed INFO @ Fri, 16 Oct 2020 07:16:42: Done! pass1 - making usageList (44 chroms): 1 millis pass2 - checking and writing primary data (808 records, 4 fields): 4 millis CompletedMACS2peakCalling