Job ID = 2001632 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:34:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T21:53:43 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 84,417,853 reads read : 84,417,853 reads written : 84,417,853 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:02 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:02:52 84417853 reads; of these: 84417853 (100.00%) were unpaired; of these: 1203851 (1.43%) aligned 0 times 73438370 (86.99%) aligned exactly 1 time 9775632 (11.58%) aligned >1 times 98.57% overall alignment rate Time searching: 01:02:55 Overall time: 01:02:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 14480528 / 83214002 = 0.1740 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 08:29:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:29:43: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:29:43: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:29:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:29:43: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:29:43: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:29:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:29:45: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:29:45: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:29:51: 1000000 INFO @ Fri, 05 Jul 2019 08:29:52: 1000000 INFO @ Fri, 05 Jul 2019 08:29:52: 1000000 INFO @ Fri, 05 Jul 2019 08:29:58: 2000000 INFO @ Fri, 05 Jul 2019 08:29:59: 2000000 INFO @ Fri, 05 Jul 2019 08:30:00: 2000000 INFO @ Fri, 05 Jul 2019 08:30:05: 3000000 INFO @ Fri, 05 Jul 2019 08:30:06: 3000000 INFO @ Fri, 05 Jul 2019 08:30:08: 3000000 INFO @ Fri, 05 Jul 2019 08:30:12: 4000000 INFO @ Fri, 05 Jul 2019 08:30:12: 4000000 INFO @ Fri, 05 Jul 2019 08:30:16: 4000000 INFO @ Fri, 05 Jul 2019 08:30:19: 5000000 INFO @ Fri, 05 Jul 2019 08:30:19: 5000000 INFO @ Fri, 05 Jul 2019 08:30:24: 5000000 INFO @ Fri, 05 Jul 2019 08:30:26: 6000000 INFO @ Fri, 05 Jul 2019 08:30:26: 6000000 INFO @ Fri, 05 Jul 2019 08:30:31: 6000000 INFO @ Fri, 05 Jul 2019 08:30:33: 7000000 INFO @ Fri, 05 Jul 2019 08:30:33: 7000000 INFO @ Fri, 05 Jul 2019 08:30:39: 7000000 INFO @ Fri, 05 Jul 2019 08:30:40: 8000000 INFO @ Fri, 05 Jul 2019 08:30:41: 8000000 INFO @ Fri, 05 Jul 2019 08:30:47: 8000000 INFO @ Fri, 05 Jul 2019 08:30:47: 9000000 INFO @ Fri, 05 Jul 2019 08:30:48: 9000000 INFO @ Fri, 05 Jul 2019 08:30:54: 10000000 INFO @ Fri, 05 Jul 2019 08:30:55: 10000000 INFO @ Fri, 05 Jul 2019 08:30:55: 9000000 INFO @ Fri, 05 Jul 2019 08:31:02: 11000000 INFO @ Fri, 05 Jul 2019 08:31:02: 11000000 INFO @ Fri, 05 Jul 2019 08:31:03: 10000000 INFO @ Fri, 05 Jul 2019 08:31:09: 12000000 INFO @ Fri, 05 Jul 2019 08:31:09: 12000000 INFO @ Fri, 05 Jul 2019 08:31:11: 11000000 INFO @ Fri, 05 Jul 2019 08:31:16: 13000000 INFO @ Fri, 05 Jul 2019 08:31:16: 13000000 INFO @ Fri, 05 Jul 2019 08:31:19: 12000000 INFO @ Fri, 05 Jul 2019 08:31:23: 14000000 INFO @ Fri, 05 Jul 2019 08:31:23: 14000000 INFO @ Fri, 05 Jul 2019 08:31:27: 13000000 INFO @ Fri, 05 Jul 2019 08:31:30: 15000000 INFO @ Fri, 05 Jul 2019 08:31:30: 15000000 INFO @ Fri, 05 Jul 2019 08:31:35: 14000000 INFO @ Fri, 05 Jul 2019 08:31:37: 16000000 INFO @ Fri, 05 Jul 2019 08:31:38: 16000000 INFO @ Fri, 05 Jul 2019 08:31:43: 15000000 INFO @ Fri, 05 Jul 2019 08:31:44: 17000000 INFO @ Fri, 05 Jul 2019 08:31:45: 17000000 INFO @ Fri, 05 Jul 2019 08:31:50: 18000000 INFO @ Fri, 05 Jul 2019 08:31:51: 16000000 INFO @ Fri, 05 Jul 2019 08:31:51: 18000000 INFO @ Fri, 05 Jul 2019 08:31:57: 19000000 INFO @ Fri, 05 Jul 2019 08:31:58: 19000000 INFO @ Fri, 05 Jul 2019 08:31:59: 17000000 INFO @ Fri, 05 Jul 2019 08:32:03: 20000000 INFO @ Fri, 05 Jul 2019 08:32:05: 20000000 INFO @ Fri, 05 Jul 2019 08:32:07: 18000000 INFO @ Fri, 05 Jul 2019 08:32:10: 21000000 INFO @ Fri, 05 Jul 2019 08:32:12: 21000000 INFO @ Fri, 05 Jul 2019 08:32:15: 19000000 INFO @ Fri, 05 Jul 2019 08:32:17: 22000000 INFO @ Fri, 05 Jul 2019 08:32:19: 22000000 INFO @ Fri, 05 Jul 2019 08:32:23: 20000000 INFO @ Fri, 05 Jul 2019 08:32:24: 23000000 INFO @ Fri, 05 Jul 2019 08:32:26: 23000000 INFO @ Fri, 05 Jul 2019 08:32:30: 21000000 INFO @ Fri, 05 Jul 2019 08:32:31: 24000000 INFO @ Fri, 05 Jul 2019 08:32:33: 24000000 INFO @ Fri, 05 Jul 2019 08:32:38: 25000000 INFO @ Fri, 05 Jul 2019 08:32:38: 22000000 INFO @ Fri, 05 Jul 2019 08:32:41: 25000000 INFO @ Fri, 05 Jul 2019 08:32:45: 26000000 INFO @ Fri, 05 Jul 2019 08:32:47: 23000000 INFO @ Fri, 05 Jul 2019 08:32:48: 26000000 INFO @ Fri, 05 Jul 2019 08:32:52: 27000000 INFO @ Fri, 05 Jul 2019 08:32:55: 27000000 INFO @ Fri, 05 Jul 2019 08:32:55: 24000000 INFO @ Fri, 05 Jul 2019 08:32:59: 28000000 INFO @ Fri, 05 Jul 2019 08:33:02: 28000000 INFO @ Fri, 05 Jul 2019 08:33:04: 25000000 INFO @ Fri, 05 Jul 2019 08:33:05: 29000000 INFO @ Fri, 05 Jul 2019 08:33:09: 29000000 INFO @ Fri, 05 Jul 2019 08:33:12: 26000000 INFO @ Fri, 05 Jul 2019 08:33:12: 30000000 INFO @ Fri, 05 Jul 2019 08:33:16: 30000000 INFO @ Fri, 05 Jul 2019 08:33:19: 31000000 INFO @ Fri, 05 Jul 2019 08:33:19: 27000000 INFO @ Fri, 05 Jul 2019 08:33:23: 31000000 INFO @ Fri, 05 Jul 2019 08:33:26: 32000000 INFO @ Fri, 05 Jul 2019 08:33:27: 28000000 INFO @ Fri, 05 Jul 2019 08:33:30: 32000000 INFO @ Fri, 05 Jul 2019 08:33:33: 33000000 INFO @ Fri, 05 Jul 2019 08:33:35: 29000000 INFO @ Fri, 05 Jul 2019 08:33:37: 33000000 INFO @ Fri, 05 Jul 2019 08:33:40: 34000000 INFO @ Fri, 05 Jul 2019 08:33:43: 30000000 INFO @ Fri, 05 Jul 2019 08:33:44: 34000000 INFO @ Fri, 05 Jul 2019 08:33:47: 35000000 INFO @ Fri, 05 Jul 2019 08:33:51: 31000000 INFO @ Fri, 05 Jul 2019 08:33:51: 35000000 INFO @ Fri, 05 Jul 2019 08:33:54: 36000000 INFO @ Fri, 05 Jul 2019 08:33:58: 36000000 INFO @ Fri, 05 Jul 2019 08:34:00: 32000000 INFO @ Fri, 05 Jul 2019 08:34:01: 37000000 INFO @ Fri, 05 Jul 2019 08:34:05: 37000000 INFO @ Fri, 05 Jul 2019 08:34:08: 33000000 INFO @ Fri, 05 Jul 2019 08:34:08: 38000000 INFO @ Fri, 05 Jul 2019 08:34:12: 38000000 INFO @ Fri, 05 Jul 2019 08:34:15: 39000000 INFO @ Fri, 05 Jul 2019 08:34:16: 34000000 INFO @ Fri, 05 Jul 2019 08:34:19: 39000000 INFO @ Fri, 05 Jul 2019 08:34:22: 40000000 INFO @ Fri, 05 Jul 2019 08:34:24: 35000000 INFO @ Fri, 05 Jul 2019 08:34:26: 40000000 INFO @ Fri, 05 Jul 2019 08:34:29: 41000000 INFO @ Fri, 05 Jul 2019 08:34:33: 36000000 INFO @ Fri, 05 Jul 2019 08:34:33: 41000000 INFO @ Fri, 05 Jul 2019 08:34:36: 42000000 INFO @ Fri, 05 Jul 2019 08:34:40: 42000000 INFO @ Fri, 05 Jul 2019 08:34:41: 37000000 INFO @ Fri, 05 Jul 2019 08:34:43: 43000000 INFO @ Fri, 05 Jul 2019 08:34:47: 43000000 INFO @ Fri, 05 Jul 2019 08:34:49: 38000000 INFO @ Fri, 05 Jul 2019 08:34:50: 44000000 INFO @ Fri, 05 Jul 2019 08:34:54: 44000000 INFO @ Fri, 05 Jul 2019 08:34:57: 45000000 INFO @ Fri, 05 Jul 2019 08:34:57: 39000000 INFO @ Fri, 05 Jul 2019 08:35:01: 45000000 INFO @ Fri, 05 Jul 2019 08:35:03: 46000000 INFO @ Fri, 05 Jul 2019 08:35:05: 40000000 INFO @ Fri, 05 Jul 2019 08:35:09: 46000000 INFO @ Fri, 05 Jul 2019 08:35:10: 47000000 INFO @ Fri, 05 Jul 2019 08:35:13: 41000000 INFO @ Fri, 05 Jul 2019 08:35:16: 47000000 INFO @ Fri, 05 Jul 2019 08:35:17: 48000000 INFO @ Fri, 05 Jul 2019 08:35:21: 42000000 INFO @ Fri, 05 Jul 2019 08:35:23: 48000000 INFO @ Fri, 05 Jul 2019 08:35:24: 49000000 INFO @ Fri, 05 Jul 2019 08:35:29: 43000000 INFO @ Fri, 05 Jul 2019 08:35:30: 49000000 INFO @ Fri, 05 Jul 2019 08:35:31: 50000000 INFO @ Fri, 05 Jul 2019 08:35:36: 44000000 INFO @ Fri, 05 Jul 2019 08:35:37: 50000000 INFO @ Fri, 05 Jul 2019 08:35:38: 51000000 INFO @ Fri, 05 Jul 2019 08:35:44: 45000000 INFO @ Fri, 05 Jul 2019 08:35:45: 52000000 INFO @ Fri, 05 Jul 2019 08:35:45: 51000000 INFO @ Fri, 05 Jul 2019 08:35:51: 53000000 INFO @ Fri, 05 Jul 2019 08:35:52: 46000000 INFO @ Fri, 05 Jul 2019 08:35:52: 52000000 INFO @ Fri, 05 Jul 2019 08:35:58: 54000000 INFO @ Fri, 05 Jul 2019 08:35:59: 53000000 INFO @ Fri, 05 Jul 2019 08:36:00: 47000000 INFO @ Fri, 05 Jul 2019 08:36:05: 55000000 INFO @ Fri, 05 Jul 2019 08:36:07: 54000000 INFO @ Fri, 05 Jul 2019 08:36:08: 48000000 INFO @ Fri, 05 Jul 2019 08:36:12: 56000000 INFO @ Fri, 05 Jul 2019 08:36:14: 55000000 INFO @ Fri, 05 Jul 2019 08:36:16: 49000000 INFO @ Fri, 05 Jul 2019 08:36:19: 57000000 INFO @ Fri, 05 Jul 2019 08:36:21: 56000000 INFO @ Fri, 05 Jul 2019 08:36:24: 50000000 INFO @ Fri, 05 Jul 2019 08:36:26: 58000000 INFO @ Fri, 05 Jul 2019 08:36:28: 57000000 INFO @ Fri, 05 Jul 2019 08:36:32: 51000000 INFO @ Fri, 05 Jul 2019 08:36:33: 59000000 INFO @ Fri, 05 Jul 2019 08:36:35: 58000000 INFO @ Fri, 05 Jul 2019 08:36:40: 60000000 INFO @ Fri, 05 Jul 2019 08:36:40: 52000000 INFO @ Fri, 05 Jul 2019 08:36:43: 59000000 INFO @ Fri, 05 Jul 2019 08:36:47: 61000000 INFO @ Fri, 05 Jul 2019 08:36:48: 53000000 INFO @ Fri, 05 Jul 2019 08:36:51: 60000000 INFO @ Fri, 05 Jul 2019 08:36:54: 62000000 INFO @ Fri, 05 Jul 2019 08:36:56: 54000000 INFO @ Fri, 05 Jul 2019 08:36:58: 61000000 INFO @ Fri, 05 Jul 2019 08:37:01: 63000000 INFO @ Fri, 05 Jul 2019 08:37:04: 55000000 INFO @ Fri, 05 Jul 2019 08:37:05: 62000000 INFO @ Fri, 05 Jul 2019 08:37:08: 64000000 INFO @ Fri, 05 Jul 2019 08:37:12: 56000000 INFO @ Fri, 05 Jul 2019 08:37:12: 63000000 INFO @ Fri, 05 Jul 2019 08:37:14: 65000000 INFO @ Fri, 05 Jul 2019 08:37:19: 64000000 INFO @ Fri, 05 Jul 2019 08:37:20: 57000000 INFO @ Fri, 05 Jul 2019 08:37:21: 66000000 INFO @ Fri, 05 Jul 2019 08:37:26: 65000000 INFO @ Fri, 05 Jul 2019 08:37:28: 67000000 INFO @ Fri, 05 Jul 2019 08:37:28: 58000000 INFO @ Fri, 05 Jul 2019 08:37:33: 66000000 INFO @ Fri, 05 Jul 2019 08:37:35: 68000000 INFO @ Fri, 05 Jul 2019 08:37:36: 59000000 INFO @ Fri, 05 Jul 2019 08:37:40: 67000000 INFO @ Fri, 05 Jul 2019 08:37:41: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 08:37:41: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 08:37:41: #1 total tags in treatment: 68733474 INFO @ Fri, 05 Jul 2019 08:37:41: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 08:37:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 08:37:42: #1 tags after filtering in treatment: 68733339 INFO @ Fri, 05 Jul 2019 08:37:42: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 08:37:42: #1 finished! INFO @ Fri, 05 Jul 2019 08:37:42: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 08:37:42: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 08:37:44: 60000000 INFO @ Fri, 05 Jul 2019 08:37:47: 68000000 INFO @ Fri, 05 Jul 2019 08:37:52: 61000000 INFO @ Fri, 05 Jul 2019 08:37:53: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 08:37:53: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 08:37:53: #1 total tags in treatment: 68733474 INFO @ Fri, 05 Jul 2019 08:37:53: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 08:37:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 08:37:54: #1 tags after filtering in treatment: 68733339 INFO @ Fri, 05 Jul 2019 08:37:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 08:37:54: #1 finished! INFO @ Fri, 05 Jul 2019 08:37:54: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 08:37:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 08:37:57: #2 number of paired peaks: 141727 INFO @ Fri, 05 Jul 2019 08:37:57: start model_add_line... INFO @ Fri, 05 Jul 2019 08:37:58: start X-correlation... INFO @ Fri, 05 Jul 2019 08:37:59: end of X-cor INFO @ Fri, 05 Jul 2019 08:37:59: #2 finished! INFO @ Fri, 05 Jul 2019 08:37:59: #2 predicted fragment length is 138 bps INFO @ Fri, 05 Jul 2019 08:37:59: #2 alternative fragment length(s) may be 2,138 bps INFO @ Fri, 05 Jul 2019 08:37:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.20_model.r INFO @ Fri, 05 Jul 2019 08:37:59: #3 Call peaks... INFO @ Fri, 05 Jul 2019 08:37:59: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 08:38:00: 62000000 INFO @ Fri, 05 Jul 2019 08:38:07: 63000000 INFO @ Fri, 05 Jul 2019 08:38:09: #2 number of paired peaks: 141727 INFO @ Fri, 05 Jul 2019 08:38:09: start model_add_line... INFO @ Fri, 05 Jul 2019 08:38:11: start X-correlation... INFO @ Fri, 05 Jul 2019 08:38:11: end of X-cor INFO @ Fri, 05 Jul 2019 08:38:11: #2 finished! INFO @ Fri, 05 Jul 2019 08:38:11: #2 predicted fragment length is 138 bps INFO @ Fri, 05 Jul 2019 08:38:11: #2 alternative fragment length(s) may be 2,138 bps INFO @ Fri, 05 Jul 2019 08:38:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.05_model.r INFO @ Fri, 05 Jul 2019 08:38:11: #3 Call peaks... INFO @ Fri, 05 Jul 2019 08:38:11: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 08:38:15: 64000000 INFO @ Fri, 05 Jul 2019 08:38:23: 65000000 INFO @ Fri, 05 Jul 2019 08:38:31: 66000000 INFO @ Fri, 05 Jul 2019 08:38:38: 67000000 INFO @ Fri, 05 Jul 2019 08:38:46: 68000000 INFO @ Fri, 05 Jul 2019 08:38:53: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 08:38:53: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 08:38:53: #1 total tags in treatment: 68733474 INFO @ Fri, 05 Jul 2019 08:38:53: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 08:38:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 08:38:54: #1 tags after filtering in treatment: 68733339 INFO @ Fri, 05 Jul 2019 08:38:54: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 08:38:54: #1 finished! INFO @ Fri, 05 Jul 2019 08:38:54: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 08:38:54: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 08:39:09: #2 number of paired peaks: 141727 INFO @ Fri, 05 Jul 2019 08:39:09: start model_add_line... INFO @ Fri, 05 Jul 2019 08:39:11: start X-correlation... INFO @ Fri, 05 Jul 2019 08:39:11: end of X-cor INFO @ Fri, 05 Jul 2019 08:39:11: #2 finished! INFO @ Fri, 05 Jul 2019 08:39:11: #2 predicted fragment length is 138 bps INFO @ Fri, 05 Jul 2019 08:39:11: #2 alternative fragment length(s) may be 2,138 bps INFO @ Fri, 05 Jul 2019 08:39:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.10_model.r INFO @ Fri, 05 Jul 2019 08:39:11: #3 Call peaks... INFO @ Fri, 05 Jul 2019 08:39:11: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 08:41:35: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 08:41:39: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 08:42:42: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 08:43:21: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.20_peaks.xls INFO @ Fri, 05 Jul 2019 08:43:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 08:43:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.20_summits.bed INFO @ Fri, 05 Jul 2019 08:43:21: Done! pass1 - making usageList (33 chroms): 2 millis pass2 - checking and writing primary data (2747 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 08:43:29: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.05_peaks.xls INFO @ Fri, 05 Jul 2019 08:43:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 08:43:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.05_summits.bed INFO @ Fri, 05 Jul 2019 08:43:32: Done! pass1 - making usageList (170 chroms): 27 millis pass2 - checking and writing primary data (123683 records, 4 fields): 149 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 08:44:33: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.10_peaks.xls INFO @ Fri, 05 Jul 2019 08:44:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 08:44:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101950/ERX101950.10_summits.bed INFO @ Fri, 05 Jul 2019 08:44:34: Done! pass1 - making usageList (88 chroms): 13 millis pass2 - checking and writing primary data (39713 records, 4 fields): 51 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。