Job ID = 2001618 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T21:33:27 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 86,463,137 reads read : 86,463,137 reads written : 86,463,137 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:07:34 86463137 reads; of these: 86463137 (100.00%) were unpaired; of these: 1470556 (1.70%) aligned 0 times 71374090 (82.55%) aligned exactly 1 time 13618491 (15.75%) aligned >1 times 98.30% overall alignment rate Time searching: 01:07:37 Overall time: 01:07:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 15950681 / 84992581 = 0.1877 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 08:17:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:17:59: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:17:59: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:17:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:17:59: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:17:59: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:18:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 08:18:00: #1 read tag files... INFO @ Fri, 05 Jul 2019 08:18:00: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 08:18:08: 1000000 INFO @ Fri, 05 Jul 2019 08:18:09: 1000000 INFO @ Fri, 05 Jul 2019 08:18:10: 1000000 INFO @ Fri, 05 Jul 2019 08:18:17: 2000000 INFO @ Fri, 05 Jul 2019 08:18:17: 2000000 INFO @ Fri, 05 Jul 2019 08:18:21: 2000000 INFO @ Fri, 05 Jul 2019 08:18:26: 3000000 INFO @ Fri, 05 Jul 2019 08:18:26: 3000000 INFO @ Fri, 05 Jul 2019 08:18:31: 3000000 INFO @ Fri, 05 Jul 2019 08:18:35: 4000000 INFO @ Fri, 05 Jul 2019 08:18:36: 4000000 INFO @ Fri, 05 Jul 2019 08:18:42: 4000000 INFO @ Fri, 05 Jul 2019 08:18:43: 5000000 INFO @ Fri, 05 Jul 2019 08:18:45: 5000000 INFO @ Fri, 05 Jul 2019 08:18:52: 5000000 INFO @ Fri, 05 Jul 2019 08:18:53: 6000000 INFO @ Fri, 05 Jul 2019 08:18:54: 6000000 INFO @ Fri, 05 Jul 2019 08:19:02: 7000000 INFO @ Fri, 05 Jul 2019 08:19:02: 6000000 INFO @ Fri, 05 Jul 2019 08:19:03: 7000000 INFO @ Fri, 05 Jul 2019 08:19:11: 8000000 INFO @ Fri, 05 Jul 2019 08:19:12: 8000000 INFO @ Fri, 05 Jul 2019 08:19:12: 7000000 INFO @ Fri, 05 Jul 2019 08:19:20: 9000000 INFO @ Fri, 05 Jul 2019 08:19:21: 9000000 INFO @ Fri, 05 Jul 2019 08:19:22: 8000000 INFO @ Fri, 05 Jul 2019 08:19:30: 10000000 INFO @ Fri, 05 Jul 2019 08:19:31: 10000000 INFO @ Fri, 05 Jul 2019 08:19:33: 9000000 INFO @ Fri, 05 Jul 2019 08:19:40: 11000000 INFO @ Fri, 05 Jul 2019 08:19:41: 11000000 INFO @ Fri, 05 Jul 2019 08:19:43: 10000000 INFO @ Fri, 05 Jul 2019 08:19:49: 12000000 INFO @ Fri, 05 Jul 2019 08:19:50: 12000000 INFO @ Fri, 05 Jul 2019 08:19:53: 11000000 INFO @ Fri, 05 Jul 2019 08:19:58: 13000000 INFO @ Fri, 05 Jul 2019 08:20:00: 13000000 INFO @ Fri, 05 Jul 2019 08:20:04: 12000000 INFO @ Fri, 05 Jul 2019 08:20:07: 14000000 INFO @ Fri, 05 Jul 2019 08:20:09: 14000000 INFO @ Fri, 05 Jul 2019 08:20:14: 13000000 INFO @ Fri, 05 Jul 2019 08:20:16: 15000000 INFO @ Fri, 05 Jul 2019 08:20:18: 15000000 INFO @ Fri, 05 Jul 2019 08:20:24: 14000000 INFO @ Fri, 05 Jul 2019 08:20:25: 16000000 INFO @ Fri, 05 Jul 2019 08:20:28: 16000000 INFO @ Fri, 05 Jul 2019 08:20:35: 17000000 INFO @ Fri, 05 Jul 2019 08:20:35: 15000000 INFO @ Fri, 05 Jul 2019 08:20:37: 17000000 INFO @ Fri, 05 Jul 2019 08:20:44: 18000000 INFO @ Fri, 05 Jul 2019 08:20:45: 16000000 INFO @ Fri, 05 Jul 2019 08:20:46: 18000000 INFO @ Fri, 05 Jul 2019 08:20:53: 19000000 INFO @ Fri, 05 Jul 2019 08:20:55: 19000000 INFO @ Fri, 05 Jul 2019 08:20:55: 17000000 INFO @ Fri, 05 Jul 2019 08:21:02: 20000000 INFO @ Fri, 05 Jul 2019 08:21:04: 20000000 INFO @ Fri, 05 Jul 2019 08:21:06: 18000000 INFO @ Fri, 05 Jul 2019 08:21:11: 21000000 INFO @ Fri, 05 Jul 2019 08:21:13: 21000000 INFO @ Fri, 05 Jul 2019 08:21:17: 19000000 INFO @ Fri, 05 Jul 2019 08:21:19: 22000000 INFO @ Fri, 05 Jul 2019 08:21:22: 22000000 INFO @ Fri, 05 Jul 2019 08:21:27: 20000000 INFO @ Fri, 05 Jul 2019 08:21:28: 23000000 INFO @ Fri, 05 Jul 2019 08:21:31: 23000000 INFO @ Fri, 05 Jul 2019 08:21:37: 24000000 INFO @ Fri, 05 Jul 2019 08:21:37: 21000000 INFO @ Fri, 05 Jul 2019 08:21:40: 24000000 INFO @ Fri, 05 Jul 2019 08:21:45: 25000000 INFO @ Fri, 05 Jul 2019 08:21:47: 22000000 INFO @ Fri, 05 Jul 2019 08:21:49: 25000000 INFO @ Fri, 05 Jul 2019 08:21:54: 26000000 INFO @ Fri, 05 Jul 2019 08:21:58: 23000000 INFO @ Fri, 05 Jul 2019 08:21:58: 26000000 INFO @ Fri, 05 Jul 2019 08:22:03: 27000000 INFO @ Fri, 05 Jul 2019 08:22:07: 27000000 INFO @ Fri, 05 Jul 2019 08:22:08: 24000000 INFO @ Fri, 05 Jul 2019 08:22:11: 28000000 INFO @ Fri, 05 Jul 2019 08:22:16: 28000000 INFO @ Fri, 05 Jul 2019 08:22:18: 25000000 INFO @ Fri, 05 Jul 2019 08:22:20: 29000000 INFO @ Fri, 05 Jul 2019 08:22:25: 29000000 INFO @ Fri, 05 Jul 2019 08:22:28: 26000000 INFO @ Fri, 05 Jul 2019 08:22:30: 30000000 INFO @ Fri, 05 Jul 2019 08:22:34: 30000000 INFO @ Fri, 05 Jul 2019 08:22:39: 27000000 INFO @ Fri, 05 Jul 2019 08:22:39: 31000000 INFO @ Fri, 05 Jul 2019 08:22:43: 31000000 INFO @ Fri, 05 Jul 2019 08:22:48: 32000000 INFO @ Fri, 05 Jul 2019 08:22:50: 28000000 INFO @ Fri, 05 Jul 2019 08:22:52: 32000000 INFO @ Fri, 05 Jul 2019 08:22:56: 33000000 INFO @ Fri, 05 Jul 2019 08:23:00: 29000000 INFO @ Fri, 05 Jul 2019 08:23:02: 33000000 INFO @ Fri, 05 Jul 2019 08:23:05: 34000000 INFO @ Fri, 05 Jul 2019 08:23:11: 34000000 INFO @ Fri, 05 Jul 2019 08:23:11: 30000000 INFO @ Fri, 05 Jul 2019 08:23:15: 35000000 INFO @ Fri, 05 Jul 2019 08:23:20: 35000000 INFO @ Fri, 05 Jul 2019 08:23:22: 31000000 INFO @ Fri, 05 Jul 2019 08:23:24: 36000000 INFO @ Fri, 05 Jul 2019 08:23:29: 36000000 INFO @ Fri, 05 Jul 2019 08:23:33: 32000000 INFO @ Fri, 05 Jul 2019 08:23:34: 37000000 INFO @ Fri, 05 Jul 2019 08:23:37: 37000000 INFO @ Fri, 05 Jul 2019 08:23:43: 38000000 INFO @ Fri, 05 Jul 2019 08:23:43: 33000000 INFO @ Fri, 05 Jul 2019 08:23:46: 38000000 INFO @ Fri, 05 Jul 2019 08:23:52: 39000000 INFO @ Fri, 05 Jul 2019 08:23:54: 34000000 INFO @ Fri, 05 Jul 2019 08:23:56: 39000000 INFO @ Fri, 05 Jul 2019 08:24:01: 40000000 INFO @ Fri, 05 Jul 2019 08:24:05: 40000000 INFO @ Fri, 05 Jul 2019 08:24:05: 35000000 INFO @ Fri, 05 Jul 2019 08:24:10: 41000000 INFO @ Fri, 05 Jul 2019 08:24:14: 41000000 INFO @ Fri, 05 Jul 2019 08:24:16: 36000000 INFO @ Fri, 05 Jul 2019 08:24:19: 42000000 INFO @ Fri, 05 Jul 2019 08:24:23: 42000000 INFO @ Fri, 05 Jul 2019 08:24:27: 37000000 INFO @ Fri, 05 Jul 2019 08:24:27: 43000000 INFO @ Fri, 05 Jul 2019 08:24:32: 43000000 INFO @ Fri, 05 Jul 2019 08:24:36: 44000000 INFO @ Fri, 05 Jul 2019 08:24:37: 38000000 INFO @ Fri, 05 Jul 2019 08:24:41: 44000000 INFO @ Fri, 05 Jul 2019 08:24:44: 45000000 INFO @ Fri, 05 Jul 2019 08:24:48: 39000000 INFO @ Fri, 05 Jul 2019 08:24:50: 45000000 INFO @ Fri, 05 Jul 2019 08:24:53: 46000000 INFO @ Fri, 05 Jul 2019 08:24:58: 40000000 INFO @ Fri, 05 Jul 2019 08:24:59: 46000000 INFO @ Fri, 05 Jul 2019 08:25:02: 47000000 INFO @ Fri, 05 Jul 2019 08:25:08: 41000000 INFO @ Fri, 05 Jul 2019 08:25:09: 47000000 INFO @ Fri, 05 Jul 2019 08:25:10: 48000000 INFO @ Fri, 05 Jul 2019 08:25:18: 48000000 INFO @ Fri, 05 Jul 2019 08:25:18: 42000000 INFO @ Fri, 05 Jul 2019 08:25:18: 49000000 INFO @ Fri, 05 Jul 2019 08:25:27: 50000000 INFO @ Fri, 05 Jul 2019 08:25:27: 49000000 INFO @ Fri, 05 Jul 2019 08:25:28: 43000000 INFO @ Fri, 05 Jul 2019 08:25:35: 51000000 INFO @ Fri, 05 Jul 2019 08:25:36: 50000000 INFO @ Fri, 05 Jul 2019 08:25:39: 44000000 INFO @ Fri, 05 Jul 2019 08:25:44: 52000000 INFO @ Fri, 05 Jul 2019 08:25:45: 51000000 INFO @ Fri, 05 Jul 2019 08:25:49: 45000000 INFO @ Fri, 05 Jul 2019 08:25:53: 53000000 INFO @ Fri, 05 Jul 2019 08:25:54: 52000000 INFO @ Fri, 05 Jul 2019 08:25:59: 46000000 INFO @ Fri, 05 Jul 2019 08:26:02: 54000000 INFO @ Fri, 05 Jul 2019 08:26:04: 53000000 INFO @ Fri, 05 Jul 2019 08:26:09: 47000000 INFO @ Fri, 05 Jul 2019 08:26:10: 55000000 INFO @ Fri, 05 Jul 2019 08:26:13: 54000000 INFO @ Fri, 05 Jul 2019 08:26:19: 48000000 INFO @ Fri, 05 Jul 2019 08:26:19: 56000000 INFO @ Fri, 05 Jul 2019 08:26:22: 55000000 INFO @ Fri, 05 Jul 2019 08:26:29: 57000000 INFO @ Fri, 05 Jul 2019 08:26:29: 49000000 INFO @ Fri, 05 Jul 2019 08:26:32: 56000000 INFO @ Fri, 05 Jul 2019 08:26:38: 58000000 INFO @ Fri, 05 Jul 2019 08:26:40: 50000000 INFO @ Fri, 05 Jul 2019 08:26:42: 57000000 INFO @ Fri, 05 Jul 2019 08:26:47: 59000000 INFO @ Fri, 05 Jul 2019 08:26:50: 51000000 INFO @ Fri, 05 Jul 2019 08:26:51: 58000000 INFO @ Fri, 05 Jul 2019 08:26:56: 60000000 INFO @ Fri, 05 Jul 2019 08:27:00: 52000000 INFO @ Fri, 05 Jul 2019 08:27:00: 59000000 INFO @ Fri, 05 Jul 2019 08:27:05: 61000000 INFO @ Fri, 05 Jul 2019 08:27:10: 60000000 INFO @ Fri, 05 Jul 2019 08:27:11: 53000000 INFO @ Fri, 05 Jul 2019 08:27:15: 62000000 INFO @ Fri, 05 Jul 2019 08:27:19: 61000000 INFO @ Fri, 05 Jul 2019 08:27:22: 54000000 INFO @ Fri, 05 Jul 2019 08:27:23: 63000000 INFO @ Fri, 05 Jul 2019 08:27:29: 62000000 INFO @ Fri, 05 Jul 2019 08:27:32: 64000000 INFO @ Fri, 05 Jul 2019 08:27:32: 55000000 INFO @ Fri, 05 Jul 2019 08:27:38: 63000000 INFO @ Fri, 05 Jul 2019 08:27:40: 65000000 INFO @ Fri, 05 Jul 2019 08:27:43: 56000000 INFO @ Fri, 05 Jul 2019 08:27:49: 64000000 INFO @ Fri, 05 Jul 2019 08:27:49: 66000000 INFO @ Fri, 05 Jul 2019 08:27:54: 57000000 INFO @ Fri, 05 Jul 2019 08:27:57: 67000000 INFO @ Fri, 05 Jul 2019 08:27:59: 65000000 INFO @ Fri, 05 Jul 2019 08:28:04: 58000000 INFO @ Fri, 05 Jul 2019 08:28:06: 68000000 INFO @ Fri, 05 Jul 2019 08:28:09: 66000000 INFO @ Fri, 05 Jul 2019 08:28:15: 69000000 INFO @ Fri, 05 Jul 2019 08:28:15: 59000000 INFO @ Fri, 05 Jul 2019 08:28:16: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 08:28:16: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 08:28:16: #1 total tags in treatment: 69041900 INFO @ Fri, 05 Jul 2019 08:28:16: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 08:28:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 08:28:17: #1 tags after filtering in treatment: 69041792 INFO @ Fri, 05 Jul 2019 08:28:17: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 08:28:17: #1 finished! INFO @ Fri, 05 Jul 2019 08:28:17: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 08:28:17: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 08:28:19: 67000000 INFO @ Fri, 05 Jul 2019 08:28:26: 60000000 INFO @ Fri, 05 Jul 2019 08:28:29: 68000000 INFO @ Fri, 05 Jul 2019 08:28:31: #2 number of paired peaks: 111326 INFO @ Fri, 05 Jul 2019 08:28:31: start model_add_line... INFO @ Fri, 05 Jul 2019 08:28:32: start X-correlation... INFO @ Fri, 05 Jul 2019 08:28:32: end of X-cor INFO @ Fri, 05 Jul 2019 08:28:32: #2 finished! INFO @ Fri, 05 Jul 2019 08:28:32: #2 predicted fragment length is 140 bps INFO @ Fri, 05 Jul 2019 08:28:32: #2 alternative fragment length(s) may be 2,140 bps INFO @ Fri, 05 Jul 2019 08:28:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.05_model.r INFO @ Fri, 05 Jul 2019 08:28:32: #3 Call peaks... INFO @ Fri, 05 Jul 2019 08:28:32: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 08:28:36: 61000000 INFO @ Fri, 05 Jul 2019 08:28:39: 69000000 INFO @ Fri, 05 Jul 2019 08:28:40: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 08:28:40: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 08:28:40: #1 total tags in treatment: 69041900 INFO @ Fri, 05 Jul 2019 08:28:40: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 08:28:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 08:28:42: #1 tags after filtering in treatment: 69041792 INFO @ Fri, 05 Jul 2019 08:28:42: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 08:28:42: #1 finished! INFO @ Fri, 05 Jul 2019 08:28:42: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 08:28:42: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 08:28:46: 62000000 INFO @ Fri, 05 Jul 2019 08:28:55: #2 number of paired peaks: 111326 INFO @ Fri, 05 Jul 2019 08:28:55: start model_add_line... INFO @ Fri, 05 Jul 2019 08:28:56: 63000000 INFO @ Fri, 05 Jul 2019 08:28:56: start X-correlation... INFO @ Fri, 05 Jul 2019 08:28:56: end of X-cor INFO @ Fri, 05 Jul 2019 08:28:56: #2 finished! INFO @ Fri, 05 Jul 2019 08:28:56: #2 predicted fragment length is 140 bps INFO @ Fri, 05 Jul 2019 08:28:56: #2 alternative fragment length(s) may be 2,140 bps INFO @ Fri, 05 Jul 2019 08:28:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.20_model.r INFO @ Fri, 05 Jul 2019 08:28:56: #3 Call peaks... INFO @ Fri, 05 Jul 2019 08:28:56: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 08:29:06: 64000000 INFO @ Fri, 05 Jul 2019 08:29:16: 65000000 INFO @ Fri, 05 Jul 2019 08:29:26: 66000000 INFO @ Fri, 05 Jul 2019 08:29:35: 67000000 INFO @ Fri, 05 Jul 2019 08:29:45: 68000000 INFO @ Fri, 05 Jul 2019 08:29:55: 69000000 INFO @ Fri, 05 Jul 2019 08:29:56: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 08:29:56: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 08:29:56: #1 total tags in treatment: 69041900 INFO @ Fri, 05 Jul 2019 08:29:56: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 08:29:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 08:29:58: #1 tags after filtering in treatment: 69041792 INFO @ Fri, 05 Jul 2019 08:29:58: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 08:29:58: #1 finished! INFO @ Fri, 05 Jul 2019 08:29:58: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 08:29:58: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 08:30:11: #2 number of paired peaks: 111326 INFO @ Fri, 05 Jul 2019 08:30:11: start model_add_line... INFO @ Fri, 05 Jul 2019 08:30:12: start X-correlation... INFO @ Fri, 05 Jul 2019 08:30:12: end of X-cor INFO @ Fri, 05 Jul 2019 08:30:12: #2 finished! INFO @ Fri, 05 Jul 2019 08:30:12: #2 predicted fragment length is 140 bps INFO @ Fri, 05 Jul 2019 08:30:12: #2 alternative fragment length(s) may be 2,140 bps INFO @ Fri, 05 Jul 2019 08:30:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.10_model.r INFO @ Fri, 05 Jul 2019 08:30:12: #3 Call peaks... INFO @ Fri, 05 Jul 2019 08:30:12: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 08:32:07: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 08:32:27: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 08:33:43: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 08:33:54: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.05_peaks.xls INFO @ Fri, 05 Jul 2019 08:33:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 08:33:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.05_summits.bed INFO @ Fri, 05 Jul 2019 08:33:55: Done! pass1 - making usageList (96 chroms): 3 millis pass2 - checking and writing primary data (8516 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 08:34:12: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.20_peaks.xls INFO @ Fri, 05 Jul 2019 08:34:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 08:34:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.20_summits.bed INFO @ Fri, 05 Jul 2019 08:34:12: Done! pass1 - making usageList (27 chroms): 2 millis pass2 - checking and writing primary data (203 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 08:35:29: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.10_peaks.xls INFO @ Fri, 05 Jul 2019 08:35:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 08:35:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101940/ERX101940.10_summits.bed INFO @ Fri, 05 Jul 2019 08:35:29: Done! pass1 - making usageList (44 chroms): 2 millis pass2 - checking and writing primary data (1288 records, 4 fields): 8 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。