Job ID = 2001557 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T19:56:12 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T19:58:31 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:01:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 91,958,646 reads read : 91,958,646 reads written : 91,958,646 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:18:07 91958646 reads; of these: 91958646 (100.00%) were unpaired; of these: 1272402 (1.38%) aligned 0 times 76933955 (83.66%) aligned exactly 1 time 13752289 (14.95%) aligned >1 times 98.62% overall alignment rate Time searching: 01:18:09 Overall time: 01:18:09 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 17767866 / 90686244 = 0.1959 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 07:15:02: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:15:02: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:15:02: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:15:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:15:03: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:15:03: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:15:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:15:04: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:15:04: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:15:11: 1000000 INFO @ Fri, 05 Jul 2019 07:15:11: 1000000 INFO @ Fri, 05 Jul 2019 07:15:15: 1000000 INFO @ Fri, 05 Jul 2019 07:15:20: 2000000 INFO @ Fri, 05 Jul 2019 07:15:20: 2000000 INFO @ Fri, 05 Jul 2019 07:15:24: 2000000 INFO @ Fri, 05 Jul 2019 07:15:28: 3000000 INFO @ Fri, 05 Jul 2019 07:15:30: 3000000 INFO @ Fri, 05 Jul 2019 07:15:34: 3000000 INFO @ Fri, 05 Jul 2019 07:15:36: 4000000 INFO @ Fri, 05 Jul 2019 07:15:39: 4000000 INFO @ Fri, 05 Jul 2019 07:15:44: 5000000 INFO @ Fri, 05 Jul 2019 07:15:44: 4000000 INFO @ Fri, 05 Jul 2019 07:15:48: 5000000 INFO @ Fri, 05 Jul 2019 07:15:52: 6000000 INFO @ Fri, 05 Jul 2019 07:15:53: 5000000 INFO @ Fri, 05 Jul 2019 07:15:57: 6000000 INFO @ Fri, 05 Jul 2019 07:16:00: 7000000 INFO @ Fri, 05 Jul 2019 07:16:03: 6000000 INFO @ Fri, 05 Jul 2019 07:16:06: 7000000 INFO @ Fri, 05 Jul 2019 07:16:08: 8000000 INFO @ Fri, 05 Jul 2019 07:16:14: 7000000 INFO @ Fri, 05 Jul 2019 07:16:15: 8000000 INFO @ Fri, 05 Jul 2019 07:16:17: 9000000 INFO @ Fri, 05 Jul 2019 07:16:24: 9000000 INFO @ Fri, 05 Jul 2019 07:16:25: 8000000 INFO @ Fri, 05 Jul 2019 07:16:26: 10000000 INFO @ Fri, 05 Jul 2019 07:16:34: 10000000 INFO @ Fri, 05 Jul 2019 07:16:35: 9000000 INFO @ Fri, 05 Jul 2019 07:16:36: 11000000 INFO @ Fri, 05 Jul 2019 07:16:44: 11000000 INFO @ Fri, 05 Jul 2019 07:16:44: 12000000 INFO @ Fri, 05 Jul 2019 07:16:45: 10000000 INFO @ Fri, 05 Jul 2019 07:16:53: 12000000 INFO @ Fri, 05 Jul 2019 07:16:53: 13000000 INFO @ Fri, 05 Jul 2019 07:16:56: 11000000 INFO @ Fri, 05 Jul 2019 07:17:01: 14000000 INFO @ Fri, 05 Jul 2019 07:17:02: 13000000 INFO @ Fri, 05 Jul 2019 07:17:06: 12000000 INFO @ Fri, 05 Jul 2019 07:17:09: 15000000 INFO @ Fri, 05 Jul 2019 07:17:11: 14000000 INFO @ Fri, 05 Jul 2019 07:17:15: 13000000 INFO @ Fri, 05 Jul 2019 07:17:17: 16000000 INFO @ Fri, 05 Jul 2019 07:17:20: 15000000 INFO @ Fri, 05 Jul 2019 07:17:24: 17000000 INFO @ Fri, 05 Jul 2019 07:17:26: 14000000 INFO @ Fri, 05 Jul 2019 07:17:29: 16000000 INFO @ Fri, 05 Jul 2019 07:17:32: 18000000 INFO @ Fri, 05 Jul 2019 07:17:35: 15000000 INFO @ Fri, 05 Jul 2019 07:17:38: 17000000 INFO @ Fri, 05 Jul 2019 07:17:40: 19000000 INFO @ Fri, 05 Jul 2019 07:17:44: 16000000 INFO @ Fri, 05 Jul 2019 07:17:46: 18000000 INFO @ Fri, 05 Jul 2019 07:17:48: 20000000 INFO @ Fri, 05 Jul 2019 07:17:54: 17000000 INFO @ Fri, 05 Jul 2019 07:17:54: 19000000 INFO @ Fri, 05 Jul 2019 07:17:55: 21000000 INFO @ Fri, 05 Jul 2019 07:18:03: 22000000 INFO @ Fri, 05 Jul 2019 07:18:03: 20000000 INFO @ Fri, 05 Jul 2019 07:18:03: 18000000 INFO @ Fri, 05 Jul 2019 07:18:10: 23000000 INFO @ Fri, 05 Jul 2019 07:18:11: 21000000 INFO @ Fri, 05 Jul 2019 07:18:12: 19000000 INFO @ Fri, 05 Jul 2019 07:18:18: 24000000 INFO @ Fri, 05 Jul 2019 07:18:20: 22000000 INFO @ Fri, 05 Jul 2019 07:18:22: 20000000 INFO @ Fri, 05 Jul 2019 07:18:27: 25000000 INFO @ Fri, 05 Jul 2019 07:18:30: 23000000 INFO @ Fri, 05 Jul 2019 07:18:32: 21000000 INFO @ Fri, 05 Jul 2019 07:18:35: 26000000 INFO @ Fri, 05 Jul 2019 07:18:40: 24000000 INFO @ Fri, 05 Jul 2019 07:18:42: 22000000 INFO @ Fri, 05 Jul 2019 07:18:43: 27000000 INFO @ Fri, 05 Jul 2019 07:18:49: 25000000 INFO @ Fri, 05 Jul 2019 07:18:52: 28000000 INFO @ Fri, 05 Jul 2019 07:18:53: 23000000 INFO @ Fri, 05 Jul 2019 07:18:59: 26000000 INFO @ Fri, 05 Jul 2019 07:19:00: 29000000 INFO @ Fri, 05 Jul 2019 07:19:04: 24000000 INFO @ Fri, 05 Jul 2019 07:19:09: 30000000 INFO @ Fri, 05 Jul 2019 07:19:10: 27000000 INFO @ Fri, 05 Jul 2019 07:19:14: 25000000 INFO @ Fri, 05 Jul 2019 07:19:17: 31000000 INFO @ Fri, 05 Jul 2019 07:19:19: 28000000 INFO @ Fri, 05 Jul 2019 07:19:24: 26000000 INFO @ Fri, 05 Jul 2019 07:19:25: 32000000 INFO @ Fri, 05 Jul 2019 07:19:28: 29000000 INFO @ Fri, 05 Jul 2019 07:19:34: 33000000 INFO @ Fri, 05 Jul 2019 07:19:35: 27000000 INFO @ Fri, 05 Jul 2019 07:19:37: 30000000 INFO @ Fri, 05 Jul 2019 07:19:43: 34000000 INFO @ Fri, 05 Jul 2019 07:19:45: 28000000 INFO @ Fri, 05 Jul 2019 07:19:47: 31000000 INFO @ Fri, 05 Jul 2019 07:19:51: 35000000 INFO @ Fri, 05 Jul 2019 07:19:56: 29000000 INFO @ Fri, 05 Jul 2019 07:19:57: 32000000 INFO @ Fri, 05 Jul 2019 07:20:00: 36000000 INFO @ Fri, 05 Jul 2019 07:20:06: 30000000 INFO @ Fri, 05 Jul 2019 07:20:08: 33000000 INFO @ Fri, 05 Jul 2019 07:20:09: 37000000 INFO @ Fri, 05 Jul 2019 07:20:17: 31000000 INFO @ Fri, 05 Jul 2019 07:20:17: 38000000 INFO @ Fri, 05 Jul 2019 07:20:18: 34000000 INFO @ Fri, 05 Jul 2019 07:20:25: 39000000 INFO @ Fri, 05 Jul 2019 07:20:28: 35000000 INFO @ Fri, 05 Jul 2019 07:20:28: 32000000 INFO @ Fri, 05 Jul 2019 07:20:34: 40000000 INFO @ Fri, 05 Jul 2019 07:20:38: 36000000 INFO @ Fri, 05 Jul 2019 07:20:40: 33000000 INFO @ Fri, 05 Jul 2019 07:20:47: 41000000 INFO @ Fri, 05 Jul 2019 07:20:49: 37000000 INFO @ Fri, 05 Jul 2019 07:20:52: 34000000 INFO @ Fri, 05 Jul 2019 07:20:59: 42000000 INFO @ Fri, 05 Jul 2019 07:20:59: 38000000 INFO @ Fri, 05 Jul 2019 07:21:04: 35000000 INFO @ Fri, 05 Jul 2019 07:21:09: 39000000 INFO @ Fri, 05 Jul 2019 07:21:10: 43000000 INFO @ Fri, 05 Jul 2019 07:21:15: 36000000 INFO @ Fri, 05 Jul 2019 07:21:20: 40000000 INFO @ Fri, 05 Jul 2019 07:21:22: 44000000 INFO @ Fri, 05 Jul 2019 07:21:27: 37000000 INFO @ Fri, 05 Jul 2019 07:21:30: 41000000 INFO @ Fri, 05 Jul 2019 07:21:33: 45000000 INFO @ Fri, 05 Jul 2019 07:21:37: 38000000 INFO @ Fri, 05 Jul 2019 07:21:40: 42000000 INFO @ Fri, 05 Jul 2019 07:21:43: 46000000 INFO @ Fri, 05 Jul 2019 07:21:47: 39000000 INFO @ Fri, 05 Jul 2019 07:21:49: 43000000 INFO @ Fri, 05 Jul 2019 07:21:54: 47000000 INFO @ Fri, 05 Jul 2019 07:21:57: 40000000 INFO @ Fri, 05 Jul 2019 07:21:58: 44000000 INFO @ Fri, 05 Jul 2019 07:22:04: 48000000 INFO @ Fri, 05 Jul 2019 07:22:06: 45000000 INFO @ Fri, 05 Jul 2019 07:22:07: 41000000 INFO @ Fri, 05 Jul 2019 07:22:14: 46000000 INFO @ Fri, 05 Jul 2019 07:22:14: 49000000 INFO @ Fri, 05 Jul 2019 07:22:17: 42000000 INFO @ Fri, 05 Jul 2019 07:22:22: 47000000 INFO @ Fri, 05 Jul 2019 07:22:25: 50000000 INFO @ Fri, 05 Jul 2019 07:22:26: 43000000 INFO @ Fri, 05 Jul 2019 07:22:31: 48000000 INFO @ Fri, 05 Jul 2019 07:22:34: 51000000 INFO @ Fri, 05 Jul 2019 07:22:35: 44000000 INFO @ Fri, 05 Jul 2019 07:22:40: 49000000 INFO @ Fri, 05 Jul 2019 07:22:44: 52000000 INFO @ Fri, 05 Jul 2019 07:22:45: 45000000 INFO @ Fri, 05 Jul 2019 07:22:49: 50000000 INFO @ Fri, 05 Jul 2019 07:22:55: 46000000 INFO @ Fri, 05 Jul 2019 07:22:55: 53000000 INFO @ Fri, 05 Jul 2019 07:22:58: 51000000 INFO @ Fri, 05 Jul 2019 07:23:05: 54000000 INFO @ Fri, 05 Jul 2019 07:23:05: 47000000 INFO @ Fri, 05 Jul 2019 07:23:07: 52000000 INFO @ Fri, 05 Jul 2019 07:23:16: 55000000 INFO @ Fri, 05 Jul 2019 07:23:16: 48000000 INFO @ Fri, 05 Jul 2019 07:23:16: 53000000 INFO @ Fri, 05 Jul 2019 07:23:26: 54000000 INFO @ Fri, 05 Jul 2019 07:23:26: 56000000 INFO @ Fri, 05 Jul 2019 07:23:26: 49000000 INFO @ Fri, 05 Jul 2019 07:23:35: 55000000 INFO @ Fri, 05 Jul 2019 07:23:37: 57000000 INFO @ Fri, 05 Jul 2019 07:23:37: 50000000 INFO @ Fri, 05 Jul 2019 07:23:44: 56000000 INFO @ Fri, 05 Jul 2019 07:23:47: 58000000 INFO @ Fri, 05 Jul 2019 07:23:48: 51000000 INFO @ Fri, 05 Jul 2019 07:23:53: 57000000 INFO @ Fri, 05 Jul 2019 07:23:57: 59000000 INFO @ Fri, 05 Jul 2019 07:23:58: 52000000 INFO @ Fri, 05 Jul 2019 07:24:02: 58000000 INFO @ Fri, 05 Jul 2019 07:24:07: 60000000 INFO @ Fri, 05 Jul 2019 07:24:09: 53000000 INFO @ Fri, 05 Jul 2019 07:24:10: 59000000 INFO @ Fri, 05 Jul 2019 07:24:17: 61000000 INFO @ Fri, 05 Jul 2019 07:24:19: 60000000 INFO @ Fri, 05 Jul 2019 07:24:20: 54000000 INFO @ Fri, 05 Jul 2019 07:24:27: 61000000 INFO @ Fri, 05 Jul 2019 07:24:27: 62000000 INFO @ Fri, 05 Jul 2019 07:24:30: 55000000 INFO @ Fri, 05 Jul 2019 07:24:36: 62000000 INFO @ Fri, 05 Jul 2019 07:24:37: 63000000 INFO @ Fri, 05 Jul 2019 07:24:41: 56000000 INFO @ Fri, 05 Jul 2019 07:24:44: 63000000 INFO @ Fri, 05 Jul 2019 07:24:47: 64000000 INFO @ Fri, 05 Jul 2019 07:24:51: 57000000 INFO @ Fri, 05 Jul 2019 07:24:53: 64000000 INFO @ Fri, 05 Jul 2019 07:24:57: 65000000 INFO @ Fri, 05 Jul 2019 07:25:01: 65000000 INFO @ Fri, 05 Jul 2019 07:25:01: 58000000 INFO @ Fri, 05 Jul 2019 07:25:07: 66000000 INFO @ Fri, 05 Jul 2019 07:25:10: 66000000 INFO @ Fri, 05 Jul 2019 07:25:12: 59000000 INFO @ Fri, 05 Jul 2019 07:25:17: 67000000 INFO @ Fri, 05 Jul 2019 07:25:19: 67000000 INFO @ Fri, 05 Jul 2019 07:25:22: 60000000 INFO @ Fri, 05 Jul 2019 07:25:27: 68000000 INFO @ Fri, 05 Jul 2019 07:25:27: 68000000 INFO @ Fri, 05 Jul 2019 07:25:32: 61000000 INFO @ Fri, 05 Jul 2019 07:25:36: 69000000 INFO @ Fri, 05 Jul 2019 07:25:38: 69000000 INFO @ Fri, 05 Jul 2019 07:25:41: 62000000 INFO @ Fri, 05 Jul 2019 07:25:44: 70000000 INFO @ Fri, 05 Jul 2019 07:25:48: 70000000 INFO @ Fri, 05 Jul 2019 07:25:52: 71000000 INFO @ Fri, 05 Jul 2019 07:25:52: 63000000 INFO @ Fri, 05 Jul 2019 07:25:58: 71000000 INFO @ Fri, 05 Jul 2019 07:26:00: 72000000 INFO @ Fri, 05 Jul 2019 07:26:02: 64000000 INFO @ Fri, 05 Jul 2019 07:26:09: 72000000 INFO @ Fri, 05 Jul 2019 07:26:09: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:26:09: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:26:09: #1 total tags in treatment: 72918378 INFO @ Fri, 05 Jul 2019 07:26:09: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:26:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:26:11: #1 tags after filtering in treatment: 72918258 INFO @ Fri, 05 Jul 2019 07:26:11: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:26:11: #1 finished! INFO @ Fri, 05 Jul 2019 07:26:11: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:26:11: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:26:12: 65000000 INFO @ Fri, 05 Jul 2019 07:26:19: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:26:19: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:26:19: #1 total tags in treatment: 72918378 INFO @ Fri, 05 Jul 2019 07:26:19: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:26:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:26:21: #1 tags after filtering in treatment: 72918258 INFO @ Fri, 05 Jul 2019 07:26:21: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:26:21: #1 finished! INFO @ Fri, 05 Jul 2019 07:26:21: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:26:21: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:26:22: 66000000 INFO @ Fri, 05 Jul 2019 07:26:27: #2 number of paired peaks: 135364 INFO @ Fri, 05 Jul 2019 07:26:27: start model_add_line... INFO @ Fri, 05 Jul 2019 07:26:28: start X-correlation... INFO @ Fri, 05 Jul 2019 07:26:28: end of X-cor INFO @ Fri, 05 Jul 2019 07:26:28: #2 finished! INFO @ Fri, 05 Jul 2019 07:26:28: #2 predicted fragment length is 132 bps INFO @ Fri, 05 Jul 2019 07:26:28: #2 alternative fragment length(s) may be 1,132 bps INFO @ Fri, 05 Jul 2019 07:26:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.05_model.r INFO @ Fri, 05 Jul 2019 07:26:28: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:26:28: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:26:31: 67000000 INFO @ Fri, 05 Jul 2019 07:26:36: #2 number of paired peaks: 135364 INFO @ Fri, 05 Jul 2019 07:26:36: start model_add_line... INFO @ Fri, 05 Jul 2019 07:26:38: start X-correlation... INFO @ Fri, 05 Jul 2019 07:26:38: end of X-cor INFO @ Fri, 05 Jul 2019 07:26:38: #2 finished! INFO @ Fri, 05 Jul 2019 07:26:38: #2 predicted fragment length is 132 bps INFO @ Fri, 05 Jul 2019 07:26:38: #2 alternative fragment length(s) may be 1,132 bps INFO @ Fri, 05 Jul 2019 07:26:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.10_model.r INFO @ Fri, 05 Jul 2019 07:26:38: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:26:38: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:26:40: 68000000 INFO @ Fri, 05 Jul 2019 07:26:49: 69000000 INFO @ Fri, 05 Jul 2019 07:26:58: 70000000 INFO @ Fri, 05 Jul 2019 07:27:07: 71000000 INFO @ Fri, 05 Jul 2019 07:27:16: 72000000 INFO @ Fri, 05 Jul 2019 07:27:26: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:27:26: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:27:26: #1 total tags in treatment: 72918378 INFO @ Fri, 05 Jul 2019 07:27:26: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:27:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:27:27: #1 tags after filtering in treatment: 72918258 INFO @ Fri, 05 Jul 2019 07:27:27: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:27:27: #1 finished! INFO @ Fri, 05 Jul 2019 07:27:27: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:27:27: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:27:42: #2 number of paired peaks: 135364 INFO @ Fri, 05 Jul 2019 07:27:42: start model_add_line... INFO @ Fri, 05 Jul 2019 07:27:44: start X-correlation... INFO @ Fri, 05 Jul 2019 07:27:44: end of X-cor INFO @ Fri, 05 Jul 2019 07:27:44: #2 finished! INFO @ Fri, 05 Jul 2019 07:27:44: #2 predicted fragment length is 132 bps INFO @ Fri, 05 Jul 2019 07:27:44: #2 alternative fragment length(s) may be 1,132 bps INFO @ Fri, 05 Jul 2019 07:27:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.20_model.r INFO @ Fri, 05 Jul 2019 07:27:44: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:27:44: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:30:25: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:30:26: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:31:32: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:32:30: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.10_peaks.xls INFO @ Fri, 05 Jul 2019 07:32:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:32:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.10_summits.bed INFO @ Fri, 05 Jul 2019 07:32:30: Done! pass1 - making usageList (52 chroms): 2 millis pass2 - checking and writing primary data (1341 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:32:36: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.05_peaks.xls INFO @ Fri, 05 Jul 2019 07:32:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:32:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.05_summits.bed INFO @ Fri, 05 Jul 2019 07:32:36: Done! pass1 - making usageList (109 chroms): 3 millis pass2 - checking and writing primary data (9183 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:33:37: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.20_peaks.xls INFO @ Fri, 05 Jul 2019 07:33:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:33:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101900/ERX101900.20_summits.bed INFO @ Fri, 05 Jul 2019 07:33:37: Done! pass1 - making usageList (28 chroms): 12 millis pass2 - checking and writing primary data (193 records, 4 fields): 10 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。