Job ID = 2001556 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-07-04T19:55:00 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:13 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:03:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:06:03 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:07:01 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:07:42 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-07-04T20:12:49 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 99,020,949 reads read : 99,020,949 reads written : 99,020,949 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:03 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:28:32 99020949 reads; of these: 99020949 (100.00%) were unpaired; of these: 2074042 (2.09%) aligned 0 times 83763105 (84.59%) aligned exactly 1 time 13183802 (13.31%) aligned >1 times 97.91% overall alignment rate Time searching: 01:28:37 Overall time: 01:28:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 953 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 24955699 / 96946907 = 0.2574 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 07:30:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:30:24: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:30:24: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:30:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:30:25: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:30:25: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:30:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.bam -f BAM -g 2.15e9 -n /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.bam'] # control file = None # effective genome size = 2.15e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 07:30:26: #1 read tag files... INFO @ Fri, 05 Jul 2019 07:30:26: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 07:30:35: 1000000 INFO @ Fri, 05 Jul 2019 07:30:38: 1000000 INFO @ Fri, 05 Jul 2019 07:30:39: 1000000 INFO @ Fri, 05 Jul 2019 07:30:47: 2000000 INFO @ Fri, 05 Jul 2019 07:30:51: 2000000 INFO @ Fri, 05 Jul 2019 07:30:52: 2000000 INFO @ Fri, 05 Jul 2019 07:30:59: 3000000 INFO @ Fri, 05 Jul 2019 07:31:05: 3000000 INFO @ Fri, 05 Jul 2019 07:31:05: 3000000 INFO @ Fri, 05 Jul 2019 07:31:11: 4000000 INFO @ Fri, 05 Jul 2019 07:31:16: 4000000 INFO @ Fri, 05 Jul 2019 07:31:17: 4000000 INFO @ Fri, 05 Jul 2019 07:31:22: 5000000 INFO @ Fri, 05 Jul 2019 07:31:28: 5000000 INFO @ Fri, 05 Jul 2019 07:31:30: 5000000 INFO @ Fri, 05 Jul 2019 07:31:33: 6000000 INFO @ Fri, 05 Jul 2019 07:31:39: 6000000 INFO @ Fri, 05 Jul 2019 07:31:42: 6000000 INFO @ Fri, 05 Jul 2019 07:31:45: 7000000 INFO @ Fri, 05 Jul 2019 07:31:50: 7000000 INFO @ Fri, 05 Jul 2019 07:31:53: 7000000 INFO @ Fri, 05 Jul 2019 07:31:56: 8000000 INFO @ Fri, 05 Jul 2019 07:32:02: 8000000 INFO @ Fri, 05 Jul 2019 07:32:06: 8000000 INFO @ Fri, 05 Jul 2019 07:32:08: 9000000 INFO @ Fri, 05 Jul 2019 07:32:12: 9000000 INFO @ Fri, 05 Jul 2019 07:32:17: 9000000 INFO @ Fri, 05 Jul 2019 07:32:19: 10000000 INFO @ Fri, 05 Jul 2019 07:32:23: 10000000 INFO @ Fri, 05 Jul 2019 07:32:29: 10000000 INFO @ Fri, 05 Jul 2019 07:32:30: 11000000 INFO @ Fri, 05 Jul 2019 07:32:34: 11000000 INFO @ Fri, 05 Jul 2019 07:32:41: 11000000 INFO @ Fri, 05 Jul 2019 07:32:42: 12000000 INFO @ Fri, 05 Jul 2019 07:32:45: 12000000 INFO @ Fri, 05 Jul 2019 07:32:53: 13000000 INFO @ Fri, 05 Jul 2019 07:32:54: 12000000 INFO @ Fri, 05 Jul 2019 07:32:56: 13000000 INFO @ Fri, 05 Jul 2019 07:33:05: 14000000 INFO @ Fri, 05 Jul 2019 07:33:06: 13000000 INFO @ Fri, 05 Jul 2019 07:33:07: 14000000 INFO @ Fri, 05 Jul 2019 07:33:16: 15000000 INFO @ Fri, 05 Jul 2019 07:33:18: 14000000 INFO @ Fri, 05 Jul 2019 07:33:18: 15000000 INFO @ Fri, 05 Jul 2019 07:33:28: 16000000 INFO @ Fri, 05 Jul 2019 07:33:30: 16000000 INFO @ Fri, 05 Jul 2019 07:33:30: 15000000 INFO @ Fri, 05 Jul 2019 07:33:39: 17000000 INFO @ Fri, 05 Jul 2019 07:33:41: 17000000 INFO @ Fri, 05 Jul 2019 07:33:42: 16000000 INFO @ Fri, 05 Jul 2019 07:33:52: 18000000 INFO @ Fri, 05 Jul 2019 07:33:53: 18000000 INFO @ Fri, 05 Jul 2019 07:33:55: 17000000 INFO @ Fri, 05 Jul 2019 07:34:03: 19000000 INFO @ Fri, 05 Jul 2019 07:34:04: 19000000 INFO @ Fri, 05 Jul 2019 07:34:07: 18000000 INFO @ Fri, 05 Jul 2019 07:34:14: 20000000 INFO @ Fri, 05 Jul 2019 07:34:16: 20000000 INFO @ Fri, 05 Jul 2019 07:34:19: 19000000 INFO @ Fri, 05 Jul 2019 07:34:25: 21000000 INFO @ Fri, 05 Jul 2019 07:34:26: 21000000 INFO @ Fri, 05 Jul 2019 07:34:31: 20000000 INFO @ Fri, 05 Jul 2019 07:34:37: 22000000 INFO @ Fri, 05 Jul 2019 07:34:38: 22000000 INFO @ Fri, 05 Jul 2019 07:34:43: 21000000 INFO @ Fri, 05 Jul 2019 07:34:48: 23000000 INFO @ Fri, 05 Jul 2019 07:34:49: 23000000 INFO @ Fri, 05 Jul 2019 07:34:55: 22000000 INFO @ Fri, 05 Jul 2019 07:35:00: 24000000 INFO @ Fri, 05 Jul 2019 07:35:01: 24000000 INFO @ Fri, 05 Jul 2019 07:35:08: 23000000 INFO @ Fri, 05 Jul 2019 07:35:11: 25000000 INFO @ Fri, 05 Jul 2019 07:35:13: 25000000 INFO @ Fri, 05 Jul 2019 07:35:20: 24000000 INFO @ Fri, 05 Jul 2019 07:35:23: 26000000 INFO @ Fri, 05 Jul 2019 07:35:24: 26000000 INFO @ Fri, 05 Jul 2019 07:35:32: 25000000 INFO @ Fri, 05 Jul 2019 07:35:34: 27000000 INFO @ Fri, 05 Jul 2019 07:35:35: 27000000 INFO @ Fri, 05 Jul 2019 07:35:44: 26000000 INFO @ Fri, 05 Jul 2019 07:35:46: 28000000 INFO @ Fri, 05 Jul 2019 07:35:47: 28000000 INFO @ Fri, 05 Jul 2019 07:35:56: 27000000 INFO @ Fri, 05 Jul 2019 07:35:57: 29000000 INFO @ Fri, 05 Jul 2019 07:35:58: 29000000 INFO @ Fri, 05 Jul 2019 07:36:08: 28000000 INFO @ Fri, 05 Jul 2019 07:36:09: 30000000 INFO @ Fri, 05 Jul 2019 07:36:09: 30000000 INFO @ Fri, 05 Jul 2019 07:36:20: 29000000 INFO @ Fri, 05 Jul 2019 07:36:21: 31000000 INFO @ Fri, 05 Jul 2019 07:36:21: 31000000 INFO @ Fri, 05 Jul 2019 07:36:31: 30000000 INFO @ Fri, 05 Jul 2019 07:36:32: 32000000 INFO @ Fri, 05 Jul 2019 07:36:32: 32000000 INFO @ Fri, 05 Jul 2019 07:36:43: 31000000 INFO @ Fri, 05 Jul 2019 07:36:44: 33000000 INFO @ Fri, 05 Jul 2019 07:36:44: 33000000 INFO @ Fri, 05 Jul 2019 07:36:55: 32000000 INFO @ Fri, 05 Jul 2019 07:36:56: 34000000 INFO @ Fri, 05 Jul 2019 07:36:57: 34000000 INFO @ Fri, 05 Jul 2019 07:37:06: 33000000 INFO @ Fri, 05 Jul 2019 07:37:07: 35000000 INFO @ Fri, 05 Jul 2019 07:37:09: 35000000 INFO @ Fri, 05 Jul 2019 07:37:18: 34000000 INFO @ Fri, 05 Jul 2019 07:37:20: 36000000 INFO @ Fri, 05 Jul 2019 07:37:21: 36000000 INFO @ Fri, 05 Jul 2019 07:37:31: 35000000 INFO @ Fri, 05 Jul 2019 07:37:32: 37000000 INFO @ Fri, 05 Jul 2019 07:37:33: 37000000 INFO @ Fri, 05 Jul 2019 07:37:43: 36000000 INFO @ Fri, 05 Jul 2019 07:37:44: 38000000 INFO @ Fri, 05 Jul 2019 07:37:45: 38000000 INFO @ Fri, 05 Jul 2019 07:37:56: 37000000 INFO @ Fri, 05 Jul 2019 07:37:56: 39000000 INFO @ Fri, 05 Jul 2019 07:37:57: 39000000 INFO @ Fri, 05 Jul 2019 07:38:08: 38000000 INFO @ Fri, 05 Jul 2019 07:38:08: 40000000 INFO @ Fri, 05 Jul 2019 07:38:09: 40000000 INFO @ Fri, 05 Jul 2019 07:38:20: 39000000 INFO @ Fri, 05 Jul 2019 07:38:21: 41000000 INFO @ Fri, 05 Jul 2019 07:38:21: 41000000 INFO @ Fri, 05 Jul 2019 07:38:33: 40000000 INFO @ Fri, 05 Jul 2019 07:38:33: 42000000 INFO @ Fri, 05 Jul 2019 07:38:33: 42000000 INFO @ Fri, 05 Jul 2019 07:38:45: 41000000 INFO @ Fri, 05 Jul 2019 07:38:45: 43000000 INFO @ Fri, 05 Jul 2019 07:38:46: 43000000 INFO @ Fri, 05 Jul 2019 07:38:58: 44000000 INFO @ Fri, 05 Jul 2019 07:38:58: 42000000 INFO @ Fri, 05 Jul 2019 07:38:59: 44000000 INFO @ Fri, 05 Jul 2019 07:39:10: 43000000 INFO @ Fri, 05 Jul 2019 07:39:11: 45000000 INFO @ Fri, 05 Jul 2019 07:39:11: 45000000 INFO @ Fri, 05 Jul 2019 07:39:22: 46000000 INFO @ Fri, 05 Jul 2019 07:39:23: 44000000 INFO @ Fri, 05 Jul 2019 07:39:23: 46000000 INFO @ Fri, 05 Jul 2019 07:39:34: 47000000 INFO @ Fri, 05 Jul 2019 07:39:35: 47000000 INFO @ Fri, 05 Jul 2019 07:39:36: 45000000 INFO @ Fri, 05 Jul 2019 07:39:46: 48000000 INFO @ Fri, 05 Jul 2019 07:39:48: 48000000 INFO @ Fri, 05 Jul 2019 07:39:48: 46000000 INFO @ Fri, 05 Jul 2019 07:39:57: 49000000 INFO @ Fri, 05 Jul 2019 07:40:01: 49000000 INFO @ Fri, 05 Jul 2019 07:40:01: 47000000 INFO @ Fri, 05 Jul 2019 07:40:09: 50000000 INFO @ Fri, 05 Jul 2019 07:40:14: 50000000 INFO @ Fri, 05 Jul 2019 07:40:14: 48000000 INFO @ Fri, 05 Jul 2019 07:40:21: 51000000 INFO @ Fri, 05 Jul 2019 07:40:26: 51000000 INFO @ Fri, 05 Jul 2019 07:40:27: 49000000 INFO @ Fri, 05 Jul 2019 07:40:32: 52000000 INFO @ Fri, 05 Jul 2019 07:40:39: 52000000 INFO @ Fri, 05 Jul 2019 07:40:39: 50000000 INFO @ Fri, 05 Jul 2019 07:40:44: 53000000 INFO @ Fri, 05 Jul 2019 07:40:51: 53000000 INFO @ Fri, 05 Jul 2019 07:40:52: 51000000 INFO @ Fri, 05 Jul 2019 07:40:56: 54000000 INFO @ Fri, 05 Jul 2019 07:41:03: 54000000 INFO @ Fri, 05 Jul 2019 07:41:06: 52000000 INFO @ Fri, 05 Jul 2019 07:41:08: 55000000 INFO @ Fri, 05 Jul 2019 07:41:16: 55000000 INFO @ Fri, 05 Jul 2019 07:41:18: 53000000 INFO @ Fri, 05 Jul 2019 07:41:19: 56000000 INFO @ Fri, 05 Jul 2019 07:41:28: 56000000 INFO @ Fri, 05 Jul 2019 07:41:31: 57000000 INFO @ Fri, 05 Jul 2019 07:41:31: 54000000 INFO @ Fri, 05 Jul 2019 07:41:42: 57000000 INFO @ Fri, 05 Jul 2019 07:41:42: 58000000 INFO @ Fri, 05 Jul 2019 07:41:45: 55000000 INFO @ Fri, 05 Jul 2019 07:41:53: 59000000 INFO @ Fri, 05 Jul 2019 07:41:56: 58000000 INFO @ Fri, 05 Jul 2019 07:41:58: 56000000 INFO @ Fri, 05 Jul 2019 07:42:06: 60000000 INFO @ Fri, 05 Jul 2019 07:42:10: 59000000 INFO @ Fri, 05 Jul 2019 07:42:12: 57000000 INFO @ Fri, 05 Jul 2019 07:42:20: 61000000 INFO @ Fri, 05 Jul 2019 07:42:23: 60000000 INFO @ Fri, 05 Jul 2019 07:42:25: 58000000 INFO @ Fri, 05 Jul 2019 07:42:33: 62000000 INFO @ Fri, 05 Jul 2019 07:42:36: 61000000 INFO @ Fri, 05 Jul 2019 07:42:39: 59000000 INFO @ Fri, 05 Jul 2019 07:42:45: 63000000 INFO @ Fri, 05 Jul 2019 07:42:49: 62000000 INFO @ Fri, 05 Jul 2019 07:42:52: 60000000 INFO @ Fri, 05 Jul 2019 07:42:58: 64000000 INFO @ Fri, 05 Jul 2019 07:43:01: 63000000 INFO @ Fri, 05 Jul 2019 07:43:05: 61000000 INFO @ Fri, 05 Jul 2019 07:43:10: 65000000 INFO @ Fri, 05 Jul 2019 07:43:13: 64000000 INFO @ Fri, 05 Jul 2019 07:43:18: 62000000 INFO @ Fri, 05 Jul 2019 07:43:23: 66000000 INFO @ Fri, 05 Jul 2019 07:43:26: 65000000 INFO @ Fri, 05 Jul 2019 07:43:32: 63000000 INFO @ Fri, 05 Jul 2019 07:43:36: 67000000 INFO @ Fri, 05 Jul 2019 07:43:39: 66000000 INFO @ Fri, 05 Jul 2019 07:43:45: 64000000 INFO @ Fri, 05 Jul 2019 07:43:49: 68000000 INFO @ Fri, 05 Jul 2019 07:43:52: 67000000 INFO @ Fri, 05 Jul 2019 07:43:58: 65000000 INFO @ Fri, 05 Jul 2019 07:44:02: 69000000 INFO @ Fri, 05 Jul 2019 07:44:04: 68000000 INFO @ Fri, 05 Jul 2019 07:44:11: 66000000 INFO @ Fri, 05 Jul 2019 07:44:15: 70000000 INFO @ Fri, 05 Jul 2019 07:44:17: 69000000 INFO @ Fri, 05 Jul 2019 07:44:23: 67000000 INFO @ Fri, 05 Jul 2019 07:44:28: 71000000 INFO @ Fri, 05 Jul 2019 07:44:30: 70000000 INFO @ Fri, 05 Jul 2019 07:44:37: 68000000 INFO @ Fri, 05 Jul 2019 07:44:41: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:44:41: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:44:41: #1 total tags in treatment: 71991208 INFO @ Fri, 05 Jul 2019 07:44:41: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:44:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:44:42: 71000000 INFO @ Fri, 05 Jul 2019 07:44:43: #1 tags after filtering in treatment: 71991085 INFO @ Fri, 05 Jul 2019 07:44:43: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:44:43: #1 finished! INFO @ Fri, 05 Jul 2019 07:44:43: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:44:43: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:44:49: 69000000 INFO @ Fri, 05 Jul 2019 07:44:55: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:44:55: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:44:55: #1 total tags in treatment: 71991208 INFO @ Fri, 05 Jul 2019 07:44:55: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:44:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:44:57: #1 tags after filtering in treatment: 71991085 INFO @ Fri, 05 Jul 2019 07:44:57: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:44:57: #1 finished! INFO @ Fri, 05 Jul 2019 07:44:57: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:44:57: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:45:00: #2 number of paired peaks: 130933 INFO @ Fri, 05 Jul 2019 07:45:00: start model_add_line... INFO @ Fri, 05 Jul 2019 07:45:02: start X-correlation... INFO @ Fri, 05 Jul 2019 07:45:02: end of X-cor INFO @ Fri, 05 Jul 2019 07:45:02: #2 finished! INFO @ Fri, 05 Jul 2019 07:45:02: #2 predicted fragment length is 126 bps INFO @ Fri, 05 Jul 2019 07:45:02: #2 alternative fragment length(s) may be 3,126 bps INFO @ Fri, 05 Jul 2019 07:45:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.10_model.r INFO @ Fri, 05 Jul 2019 07:45:02: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:45:02: 70000000 INFO @ Fri, 05 Jul 2019 07:45:02: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:45:14: #2 number of paired peaks: 130933 INFO @ Fri, 05 Jul 2019 07:45:14: start model_add_line... INFO @ Fri, 05 Jul 2019 07:45:15: 71000000 INFO @ Fri, 05 Jul 2019 07:45:16: start X-correlation... INFO @ Fri, 05 Jul 2019 07:45:16: end of X-cor INFO @ Fri, 05 Jul 2019 07:45:16: #2 finished! INFO @ Fri, 05 Jul 2019 07:45:16: #2 predicted fragment length is 126 bps INFO @ Fri, 05 Jul 2019 07:45:16: #2 alternative fragment length(s) may be 3,126 bps INFO @ Fri, 05 Jul 2019 07:45:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.05_model.r INFO @ Fri, 05 Jul 2019 07:45:16: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:45:16: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:45:28: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 07:45:28: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 07:45:28: #1 total tags in treatment: 71991208 INFO @ Fri, 05 Jul 2019 07:45:28: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 07:45:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 07:45:30: #1 tags after filtering in treatment: 71991085 INFO @ Fri, 05 Jul 2019 07:45:30: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 07:45:30: #1 finished! INFO @ Fri, 05 Jul 2019 07:45:30: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 07:45:30: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 07:45:46: #2 number of paired peaks: 130933 INFO @ Fri, 05 Jul 2019 07:45:46: start model_add_line... INFO @ Fri, 05 Jul 2019 07:45:47: start X-correlation... INFO @ Fri, 05 Jul 2019 07:45:47: end of X-cor INFO @ Fri, 05 Jul 2019 07:45:47: #2 finished! INFO @ Fri, 05 Jul 2019 07:45:47: #2 predicted fragment length is 126 bps INFO @ Fri, 05 Jul 2019 07:45:47: #2 alternative fragment length(s) may be 3,126 bps INFO @ Fri, 05 Jul 2019 07:45:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.20_model.r INFO @ Fri, 05 Jul 2019 07:45:47: #3 Call peaks... INFO @ Fri, 05 Jul 2019 07:45:47: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 05 Jul 2019 07:49:32: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:49:42: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:49:59: #3 Call peaks for each chromosome... INFO @ Fri, 05 Jul 2019 07:52:01: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.10_peaks.xls INFO @ Fri, 05 Jul 2019 07:52:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.10_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:52:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.10_summits.bed INFO @ Fri, 05 Jul 2019 07:52:02: Done! pass1 - making usageList (119 chroms): 13 millis pass2 - checking and writing primary data (58406 records, 4 fields): 86 millis CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 07:52:12: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.05_peaks.xls INFO @ Fri, 05 Jul 2019 07:52:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.05_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:52:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.05_summits.bed INFO @ Fri, 05 Jul 2019 07:52:19: #4 Write output xls file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.20_peaks.xls INFO @ Fri, 05 Jul 2019 07:52:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.20_peaks.narrowPeak INFO @ Fri, 05 Jul 2019 07:52:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/rn6/ERX101899/ERX101899.20_summits.bed INFO @ Fri, 05 Jul 2019 07:52:29: Done! INFO @ Fri, 05 Jul 2019 07:52:30: Done! pass1 - making usageList (49 chroms): 3 millis pass2 - checking and writing primary data (10934 records, 4 fields): 35 millis CompletedMACS2peakCalling pass1 - making usageList (200 chroms): 32 millis pass2 - checking and writing primary data (145681 records, 4 fields): 194 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。