Job ID = 14171360 SRX = SRX9304580 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 69525918 spots for SRR12837077/SRR12837077.sra Written 69525918 spots for SRR12837077/SRR12837077.sra fastq に変換しました。 bowtie でマッピング中... Your job 14172380 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:52:44 69525918 reads; of these: 69525918 (100.00%) were paired; of these: 16333431 (23.49%) aligned concordantly 0 times 44137455 (63.48%) aligned concordantly exactly 1 time 9055032 (13.02%) aligned concordantly >1 times ---- 16333431 pairs aligned concordantly 0 times; of these: 721521 (4.42%) aligned discordantly 1 time ---- 15611910 pairs aligned 0 times concordantly or discordantly; of these: 31223820 mates make up the pairs; of these: 29606563 (94.82%) aligned 0 times 1123978 (3.60%) aligned exactly 1 time 493279 (1.58%) aligned >1 times 78.71% overall alignment rate Time searching: 01:52:44 Overall time: 01:52:44 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 31001094 / 38385826 = 0.8076 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 13:58:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 13:58:07: #1 read tag files... INFO @ Sat, 11 Dec 2021 13:58:07: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 13:58:15: 1000000 INFO @ Sat, 11 Dec 2021 13:58:24: 2000000 INFO @ Sat, 11 Dec 2021 13:58:32: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 13:58:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 13:58:37: #1 read tag files... INFO @ Sat, 11 Dec 2021 13:58:37: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 13:58:40: 4000000 INFO @ Sat, 11 Dec 2021 13:58:48: 1000000 INFO @ Sat, 11 Dec 2021 13:58:48: 5000000 INFO @ Sat, 11 Dec 2021 13:58:56: 6000000 INFO @ Sat, 11 Dec 2021 13:58:59: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 13:59:05: 7000000 INFO @ Sat, 11 Dec 2021 13:59:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 13:59:07: #1 read tag files... INFO @ Sat, 11 Dec 2021 13:59:07: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 13:59:10: 3000000 INFO @ Sat, 11 Dec 2021 13:59:14: 8000000 INFO @ Sat, 11 Dec 2021 13:59:19: 1000000 INFO @ Sat, 11 Dec 2021 13:59:22: 4000000 INFO @ Sat, 11 Dec 2021 13:59:22: 9000000 INFO @ Sat, 11 Dec 2021 13:59:31: 2000000 INFO @ Sat, 11 Dec 2021 13:59:31: 10000000 INFO @ Sat, 11 Dec 2021 13:59:33: 5000000 INFO @ Sat, 11 Dec 2021 13:59:39: 11000000 INFO @ Sat, 11 Dec 2021 13:59:43: 3000000 INFO @ Sat, 11 Dec 2021 13:59:44: 6000000 INFO @ Sat, 11 Dec 2021 13:59:49: 12000000 INFO @ Sat, 11 Dec 2021 13:59:55: 7000000 INFO @ Sat, 11 Dec 2021 13:59:55: 4000000 INFO @ Sat, 11 Dec 2021 13:59:57: 13000000 INFO @ Sat, 11 Dec 2021 14:00:06: 14000000 INFO @ Sat, 11 Dec 2021 14:00:06: 8000000 INFO @ Sat, 11 Dec 2021 14:00:07: 5000000 INFO @ Sat, 11 Dec 2021 14:00:14: 15000000 INFO @ Sat, 11 Dec 2021 14:00:17: 9000000 INFO @ Sat, 11 Dec 2021 14:00:18: 6000000 INFO @ Sat, 11 Dec 2021 14:00:23: 16000000 INFO @ Sat, 11 Dec 2021 14:00:27: 10000000 INFO @ Sat, 11 Dec 2021 14:00:30: 7000000 INFO @ Sat, 11 Dec 2021 14:00:31: 17000000 INFO @ Sat, 11 Dec 2021 14:00:38: 11000000 INFO @ Sat, 11 Dec 2021 14:00:40: 18000000 INFO @ Sat, 11 Dec 2021 14:00:41: 8000000 INFO @ Sat, 11 Dec 2021 14:00:48: 12000000 INFO @ Sat, 11 Dec 2021 14:00:49: 19000000 INFO @ Sat, 11 Dec 2021 14:00:52: 9000000 INFO @ Sat, 11 Dec 2021 14:00:57: 20000000 INFO @ Sat, 11 Dec 2021 14:00:59: 13000000 INFO @ Sat, 11 Dec 2021 14:01:04: 10000000 INFO @ Sat, 11 Dec 2021 14:01:07: 21000000 INFO @ Sat, 11 Dec 2021 14:01:10: 14000000 INFO @ Sat, 11 Dec 2021 14:01:15: 11000000 INFO @ Sat, 11 Dec 2021 14:01:16: 22000000 INFO @ Sat, 11 Dec 2021 14:01:20: 15000000 INFO @ Sat, 11 Dec 2021 14:01:24: 23000000 INFO @ Sat, 11 Dec 2021 14:01:26: 12000000 INFO @ Sat, 11 Dec 2021 14:01:31: 16000000 INFO @ Sat, 11 Dec 2021 14:01:33: 24000000 INFO @ Sat, 11 Dec 2021 14:01:37: 13000000 INFO @ Sat, 11 Dec 2021 14:01:42: 17000000 INFO @ Sat, 11 Dec 2021 14:01:42: 25000000 INFO @ Sat, 11 Dec 2021 14:01:48: 14000000 INFO @ Sat, 11 Dec 2021 14:01:51: 26000000 INFO @ Sat, 11 Dec 2021 14:01:52: 18000000 INFO @ Sat, 11 Dec 2021 14:01:59: 15000000 INFO @ Sat, 11 Dec 2021 14:01:59: 27000000 INFO @ Sat, 11 Dec 2021 14:02:04: 19000000 INFO @ Sat, 11 Dec 2021 14:02:08: 28000000 INFO @ Sat, 11 Dec 2021 14:02:10: 16000000 INFO @ Sat, 11 Dec 2021 14:02:15: 20000000 INFO @ Sat, 11 Dec 2021 14:02:17: 29000000 INFO @ Sat, 11 Dec 2021 14:02:21: 17000000 INFO @ Sat, 11 Dec 2021 14:02:26: 21000000 INFO @ Sat, 11 Dec 2021 14:02:26: 30000000 INFO @ Sat, 11 Dec 2021 14:02:32: 18000000 INFO @ Sat, 11 Dec 2021 14:02:34: 31000000 INFO @ Sat, 11 Dec 2021 14:02:37: 22000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 14:02:42: 32000000 INFO @ Sat, 11 Dec 2021 14:02:44: 19000000 INFO @ Sat, 11 Dec 2021 14:02:47: 23000000 INFO @ Sat, 11 Dec 2021 14:02:51: 33000000 INFO @ Sat, 11 Dec 2021 14:02:55: 20000000 INFO @ Sat, 11 Dec 2021 14:02:58: 24000000 INFO @ Sat, 11 Dec 2021 14:03:00: 34000000 INFO @ Sat, 11 Dec 2021 14:03:06: 21000000 INFO @ Sat, 11 Dec 2021 14:03:09: 35000000 INFO @ Sat, 11 Dec 2021 14:03:10: 25000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 14:03:17: 22000000 INFO @ Sat, 11 Dec 2021 14:03:18: 36000000 INFO @ Sat, 11 Dec 2021 14:03:20: 26000000 INFO @ Sat, 11 Dec 2021 14:03:27: 37000000 INFO @ Sat, 11 Dec 2021 14:03:29: 23000000 INFO @ Sat, 11 Dec 2021 14:03:31: 27000000 INFO @ Sat, 11 Dec 2021 14:03:36: 38000000 INFO @ Sat, 11 Dec 2021 14:03:40: 24000000 INFO @ Sat, 11 Dec 2021 14:03:42: 28000000 INFO @ Sat, 11 Dec 2021 14:03:45: 39000000 INFO @ Sat, 11 Dec 2021 14:03:52: 25000000 INFO @ Sat, 11 Dec 2021 14:03:53: 29000000 INFO @ Sat, 11 Dec 2021 14:03:55: 40000000 INFO @ Sat, 11 Dec 2021 14:04:04: 30000000 INFO @ Sat, 11 Dec 2021 14:04:04: 26000000 INFO @ Sat, 11 Dec 2021 14:04:04: 41000000 INFO @ Sat, 11 Dec 2021 14:04:13: 42000000 INFO @ Sat, 11 Dec 2021 14:04:15: 31000000 INFO @ Sat, 11 Dec 2021 14:04:15: 27000000 INFO @ Sat, 11 Dec 2021 14:04:22: 43000000 INFO @ Sat, 11 Dec 2021 14:04:25: 32000000 INFO @ Sat, 11 Dec 2021 14:04:26: 28000000 INFO @ Sat, 11 Dec 2021 14:04:31: 44000000 INFO @ Sat, 11 Dec 2021 14:04:36: 33000000 INFO @ Sat, 11 Dec 2021 14:04:38: 29000000 INFO @ Sat, 11 Dec 2021 14:04:40: 45000000 INFO @ Sat, 11 Dec 2021 14:04:48: 34000000 INFO @ Sat, 11 Dec 2021 14:04:49: 46000000 INFO @ Sat, 11 Dec 2021 14:04:49: 30000000 INFO @ Sat, 11 Dec 2021 14:04:58: 47000000 INFO @ Sat, 11 Dec 2021 14:04:59: 35000000 INFO @ Sat, 11 Dec 2021 14:05:01: 31000000 INFO @ Sat, 11 Dec 2021 14:05:02: #1 tag size is determined as 69 bps INFO @ Sat, 11 Dec 2021 14:05:02: #1 tag size = 69 INFO @ Sat, 11 Dec 2021 14:05:02: #1 total tags in treatment: 22412925 INFO @ Sat, 11 Dec 2021 14:05:02: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:05:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:05:03: #1 tags after filtering in treatment: 6942791 INFO @ Sat, 11 Dec 2021 14:05:03: #1 Redundant rate of treatment: 0.69 INFO @ Sat, 11 Dec 2021 14:05:03: #1 finished! INFO @ Sat, 11 Dec 2021 14:05:03: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:05:03: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:05:04: #2 number of paired peaks: 4277 INFO @ Sat, 11 Dec 2021 14:05:04: start model_add_line... INFO @ Sat, 11 Dec 2021 14:05:04: start X-correlation... INFO @ Sat, 11 Dec 2021 14:05:04: end of X-cor INFO @ Sat, 11 Dec 2021 14:05:04: #2 finished! INFO @ Sat, 11 Dec 2021 14:05:04: #2 predicted fragment length is 88 bps INFO @ Sat, 11 Dec 2021 14:05:04: #2 alternative fragment length(s) may be 88 bps INFO @ Sat, 11 Dec 2021 14:05:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.05_model.r WARNING @ Sat, 11 Dec 2021 14:05:04: #2 Since the d (88) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 14:05:04: #2 You may need to consider one of the other alternative d(s): 88 WARNING @ Sat, 11 Dec 2021 14:05:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 14:05:04: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:05:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:05:11: 36000000 INFO @ Sat, 11 Dec 2021 14:05:12: 32000000 INFO @ Sat, 11 Dec 2021 14:05:23: 33000000 INFO @ Sat, 11 Dec 2021 14:05:23: 37000000 INFO @ Sat, 11 Dec 2021 14:05:26: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:05:34: 34000000 INFO @ Sat, 11 Dec 2021 14:05:35: 38000000 INFO @ Sat, 11 Dec 2021 14:05:37: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.05_peaks.xls INFO @ Sat, 11 Dec 2021 14:05:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:05:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.05_summits.bed INFO @ Sat, 11 Dec 2021 14:05:37: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (16660 records, 4 fields): 30 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 14:05:46: 35000000 INFO @ Sat, 11 Dec 2021 14:05:47: 39000000 INFO @ Sat, 11 Dec 2021 14:05:57: 36000000 INFO @ Sat, 11 Dec 2021 14:05:59: 40000000 INFO @ Sat, 11 Dec 2021 14:06:09: 37000000 INFO @ Sat, 11 Dec 2021 14:06:11: 41000000 INFO @ Sat, 11 Dec 2021 14:06:21: 38000000 INFO @ Sat, 11 Dec 2021 14:06:23: 42000000 INFO @ Sat, 11 Dec 2021 14:06:33: 39000000 INFO @ Sat, 11 Dec 2021 14:06:35: 43000000 INFO @ Sat, 11 Dec 2021 14:06:45: 40000000 INFO @ Sat, 11 Dec 2021 14:06:46: 44000000 INFO @ Sat, 11 Dec 2021 14:06:57: 45000000 INFO @ Sat, 11 Dec 2021 14:06:57: 41000000 INFO @ Sat, 11 Dec 2021 14:07:08: 46000000 INFO @ Sat, 11 Dec 2021 14:07:09: 42000000 INFO @ Sat, 11 Dec 2021 14:07:19: 47000000 INFO @ Sat, 11 Dec 2021 14:07:21: 43000000 INFO @ Sat, 11 Dec 2021 14:07:24: #1 tag size is determined as 69 bps INFO @ Sat, 11 Dec 2021 14:07:24: #1 tag size = 69 INFO @ Sat, 11 Dec 2021 14:07:24: #1 total tags in treatment: 22412925 INFO @ Sat, 11 Dec 2021 14:07:24: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:07:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:07:24: #1 tags after filtering in treatment: 6942791 INFO @ Sat, 11 Dec 2021 14:07:24: #1 Redundant rate of treatment: 0.69 INFO @ Sat, 11 Dec 2021 14:07:24: #1 finished! INFO @ Sat, 11 Dec 2021 14:07:24: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:07:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:07:25: #2 number of paired peaks: 4277 INFO @ Sat, 11 Dec 2021 14:07:25: start model_add_line... INFO @ Sat, 11 Dec 2021 14:07:25: start X-correlation... INFO @ Sat, 11 Dec 2021 14:07:25: end of X-cor INFO @ Sat, 11 Dec 2021 14:07:25: #2 finished! INFO @ Sat, 11 Dec 2021 14:07:25: #2 predicted fragment length is 88 bps INFO @ Sat, 11 Dec 2021 14:07:25: #2 alternative fragment length(s) may be 88 bps INFO @ Sat, 11 Dec 2021 14:07:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.10_model.r WARNING @ Sat, 11 Dec 2021 14:07:25: #2 Since the d (88) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 14:07:25: #2 You may need to consider one of the other alternative d(s): 88 WARNING @ Sat, 11 Dec 2021 14:07:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 14:07:25: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:07:25: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:07:33: 44000000 INFO @ Sat, 11 Dec 2021 14:07:45: 45000000 INFO @ Sat, 11 Dec 2021 14:07:47: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:07:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.10_peaks.xls INFO @ Sat, 11 Dec 2021 14:07:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:07:57: 46000000 INFO @ Sat, 11 Dec 2021 14:07:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.10_summits.bed INFO @ Sat, 11 Dec 2021 14:07:58: Done! pass1 - making usageList (15 chroms): 6 millis pass2 - checking and writing primary data (10688 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 14:08:09: 47000000 INFO @ Sat, 11 Dec 2021 14:08:14: #1 tag size is determined as 69 bps INFO @ Sat, 11 Dec 2021 14:08:14: #1 tag size = 69 INFO @ Sat, 11 Dec 2021 14:08:14: #1 total tags in treatment: 22412925 INFO @ Sat, 11 Dec 2021 14:08:14: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:08:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:08:14: #1 tags after filtering in treatment: 6942791 INFO @ Sat, 11 Dec 2021 14:08:14: #1 Redundant rate of treatment: 0.69 INFO @ Sat, 11 Dec 2021 14:08:14: #1 finished! INFO @ Sat, 11 Dec 2021 14:08:14: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:08:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:08:15: #2 number of paired peaks: 4277 INFO @ Sat, 11 Dec 2021 14:08:15: start model_add_line... INFO @ Sat, 11 Dec 2021 14:08:15: start X-correlation... INFO @ Sat, 11 Dec 2021 14:08:15: end of X-cor INFO @ Sat, 11 Dec 2021 14:08:15: #2 finished! INFO @ Sat, 11 Dec 2021 14:08:15: #2 predicted fragment length is 88 bps INFO @ Sat, 11 Dec 2021 14:08:15: #2 alternative fragment length(s) may be 88 bps INFO @ Sat, 11 Dec 2021 14:08:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.20_model.r WARNING @ Sat, 11 Dec 2021 14:08:15: #2 Since the d (88) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 14:08:15: #2 You may need to consider one of the other alternative d(s): 88 WARNING @ Sat, 11 Dec 2021 14:08:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 14:08:15: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:08:15: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:08:37: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:08:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.20_peaks.xls INFO @ Sat, 11 Dec 2021 14:08:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:08:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9304580/SRX9304580.20_summits.bed INFO @ Sat, 11 Dec 2021 14:08:47: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (4109 records, 4 fields): 31 millis CompletedMACS2peakCalling