Job ID = 14172145 SRX = SRX9103833 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 66110203 spots for SRR12621033/SRR12621033.sra Written 66110203 spots for SRR12621033/SRR12621033.sra fastq に変換しました。 bowtie でマッピング中... Your job 14172911 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:03:23 66110203 reads; of these: 66110203 (100.00%) were paired; of these: 18568352 (28.09%) aligned concordantly 0 times 23338109 (35.30%) aligned concordantly exactly 1 time 24203742 (36.61%) aligned concordantly >1 times ---- 18568352 pairs aligned concordantly 0 times; of these: 4320240 (23.27%) aligned discordantly 1 time ---- 14248112 pairs aligned 0 times concordantly or discordantly; of these: 28496224 mates make up the pairs; of these: 21919157 (76.92%) aligned 0 times 1589686 (5.58%) aligned exactly 1 time 4987381 (17.50%) aligned >1 times 83.42% overall alignment rate Time searching: 01:03:23 Overall time: 01:03:23 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 21300363 / 51233219 = 0.4158 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:04:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:04:18: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:04:18: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:04:23: 1000000 INFO @ Sat, 11 Dec 2021 16:04:28: 2000000 INFO @ Sat, 11 Dec 2021 16:04:34: 3000000 INFO @ Sat, 11 Dec 2021 16:04:39: 4000000 INFO @ Sat, 11 Dec 2021 16:04:45: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:04:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:04:48: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:04:48: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:04:50: 6000000 INFO @ Sat, 11 Dec 2021 16:04:53: 1000000 INFO @ Sat, 11 Dec 2021 16:04:56: 7000000 INFO @ Sat, 11 Dec 2021 16:04:59: 2000000 INFO @ Sat, 11 Dec 2021 16:05:02: 8000000 INFO @ Sat, 11 Dec 2021 16:05:05: 3000000 INFO @ Sat, 11 Dec 2021 16:05:07: 9000000 INFO @ Sat, 11 Dec 2021 16:05:10: 4000000 INFO @ Sat, 11 Dec 2021 16:05:13: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:05:16: 5000000 INFO @ Sat, 11 Dec 2021 16:05:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:05:18: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:05:18: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:05:19: 11000000 INFO @ Sat, 11 Dec 2021 16:05:21: 6000000 INFO @ Sat, 11 Dec 2021 16:05:23: 1000000 INFO @ Sat, 11 Dec 2021 16:05:25: 12000000 INFO @ Sat, 11 Dec 2021 16:05:27: 7000000 INFO @ Sat, 11 Dec 2021 16:05:28: 2000000 INFO @ Sat, 11 Dec 2021 16:05:30: 13000000 INFO @ Sat, 11 Dec 2021 16:05:32: 3000000 INFO @ Sat, 11 Dec 2021 16:05:32: 8000000 INFO @ Sat, 11 Dec 2021 16:05:36: 14000000 INFO @ Sat, 11 Dec 2021 16:05:37: 4000000 INFO @ Sat, 11 Dec 2021 16:05:38: 9000000 INFO @ Sat, 11 Dec 2021 16:05:42: 15000000 INFO @ Sat, 11 Dec 2021 16:05:42: 5000000 INFO @ Sat, 11 Dec 2021 16:05:44: 10000000 INFO @ Sat, 11 Dec 2021 16:05:47: 6000000 INFO @ Sat, 11 Dec 2021 16:05:47: 16000000 INFO @ Sat, 11 Dec 2021 16:05:49: 11000000 INFO @ Sat, 11 Dec 2021 16:05:52: 7000000 INFO @ Sat, 11 Dec 2021 16:05:53: 17000000 INFO @ Sat, 11 Dec 2021 16:05:55: 12000000 INFO @ Sat, 11 Dec 2021 16:05:56: 8000000 INFO @ Sat, 11 Dec 2021 16:05:59: 18000000 INFO @ Sat, 11 Dec 2021 16:06:01: 13000000 INFO @ Sat, 11 Dec 2021 16:06:01: 9000000 INFO @ Sat, 11 Dec 2021 16:06:05: 19000000 INFO @ Sat, 11 Dec 2021 16:06:06: 14000000 INFO @ Sat, 11 Dec 2021 16:06:06: 10000000 INFO @ Sat, 11 Dec 2021 16:06:10: 20000000 INFO @ Sat, 11 Dec 2021 16:06:11: 11000000 INFO @ Sat, 11 Dec 2021 16:06:12: 15000000 INFO @ Sat, 11 Dec 2021 16:06:16: 12000000 INFO @ Sat, 11 Dec 2021 16:06:16: 21000000 INFO @ Sat, 11 Dec 2021 16:06:17: 16000000 INFO @ Sat, 11 Dec 2021 16:06:20: 13000000 INFO @ Sat, 11 Dec 2021 16:06:22: 22000000 INFO @ Sat, 11 Dec 2021 16:06:23: 17000000 INFO @ Sat, 11 Dec 2021 16:06:25: 14000000 INFO @ Sat, 11 Dec 2021 16:06:27: 23000000 INFO @ Sat, 11 Dec 2021 16:06:29: 18000000 INFO @ Sat, 11 Dec 2021 16:06:30: 15000000 INFO @ Sat, 11 Dec 2021 16:06:33: 24000000 INFO @ Sat, 11 Dec 2021 16:06:34: 19000000 INFO @ Sat, 11 Dec 2021 16:06:34: 16000000 INFO @ Sat, 11 Dec 2021 16:06:39: 25000000 INFO @ Sat, 11 Dec 2021 16:06:39: 17000000 INFO @ Sat, 11 Dec 2021 16:06:40: 20000000 INFO @ Sat, 11 Dec 2021 16:06:44: 18000000 INFO @ Sat, 11 Dec 2021 16:06:44: 26000000 INFO @ Sat, 11 Dec 2021 16:06:46: 21000000 INFO @ Sat, 11 Dec 2021 16:06:49: 19000000 INFO @ Sat, 11 Dec 2021 16:06:50: 27000000 INFO @ Sat, 11 Dec 2021 16:06:51: 22000000 INFO @ Sat, 11 Dec 2021 16:06:53: 20000000 INFO @ Sat, 11 Dec 2021 16:06:56: 28000000 INFO @ Sat, 11 Dec 2021 16:06:56: 23000000 INFO @ Sat, 11 Dec 2021 16:06:58: 21000000 INFO @ Sat, 11 Dec 2021 16:07:01: 29000000 INFO @ Sat, 11 Dec 2021 16:07:02: 24000000 INFO @ Sat, 11 Dec 2021 16:07:03: 22000000 INFO @ Sat, 11 Dec 2021 16:07:07: 30000000 INFO @ Sat, 11 Dec 2021 16:07:08: 25000000 INFO @ Sat, 11 Dec 2021 16:07:08: 23000000 INFO @ Sat, 11 Dec 2021 16:07:12: 24000000 INFO @ Sat, 11 Dec 2021 16:07:13: 31000000 INFO @ Sat, 11 Dec 2021 16:07:13: 26000000 INFO @ Sat, 11 Dec 2021 16:07:18: 25000000 INFO @ Sat, 11 Dec 2021 16:07:18: 32000000 INFO @ Sat, 11 Dec 2021 16:07:19: 27000000 INFO @ Sat, 11 Dec 2021 16:07:23: 26000000 INFO @ Sat, 11 Dec 2021 16:07:24: 33000000 INFO @ Sat, 11 Dec 2021 16:07:24: 28000000 INFO @ Sat, 11 Dec 2021 16:07:27: 27000000 INFO @ Sat, 11 Dec 2021 16:07:30: 34000000 INFO @ Sat, 11 Dec 2021 16:07:30: 29000000 INFO @ Sat, 11 Dec 2021 16:07:32: 28000000 INFO @ Sat, 11 Dec 2021 16:07:35: 35000000 INFO @ Sat, 11 Dec 2021 16:07:35: 30000000 INFO @ Sat, 11 Dec 2021 16:07:37: 29000000 INFO @ Sat, 11 Dec 2021 16:07:41: 36000000 INFO @ Sat, 11 Dec 2021 16:07:41: 31000000 INFO @ Sat, 11 Dec 2021 16:07:42: 30000000 INFO @ Sat, 11 Dec 2021 16:07:46: 37000000 INFO @ Sat, 11 Dec 2021 16:07:46: 31000000 INFO @ Sat, 11 Dec 2021 16:07:47: 32000000 INFO @ Sat, 11 Dec 2021 16:07:51: 32000000 INFO @ Sat, 11 Dec 2021 16:07:52: 38000000 INFO @ Sat, 11 Dec 2021 16:07:52: 33000000 INFO @ Sat, 11 Dec 2021 16:07:56: 33000000 INFO @ Sat, 11 Dec 2021 16:07:57: 39000000 INFO @ Sat, 11 Dec 2021 16:07:58: 34000000 INFO @ Sat, 11 Dec 2021 16:08:01: 34000000 INFO @ Sat, 11 Dec 2021 16:08:03: 40000000 INFO @ Sat, 11 Dec 2021 16:08:03: 35000000 INFO @ Sat, 11 Dec 2021 16:08:05: 35000000 INFO @ Sat, 11 Dec 2021 16:08:08: 41000000 INFO @ Sat, 11 Dec 2021 16:08:09: 36000000 INFO @ Sat, 11 Dec 2021 16:08:10: 36000000 INFO @ Sat, 11 Dec 2021 16:08:14: 42000000 INFO @ Sat, 11 Dec 2021 16:08:14: 37000000 INFO @ Sat, 11 Dec 2021 16:08:15: 37000000 INFO @ Sat, 11 Dec 2021 16:08:19: 43000000 INFO @ Sat, 11 Dec 2021 16:08:20: 38000000 INFO @ Sat, 11 Dec 2021 16:08:20: 38000000 INFO @ Sat, 11 Dec 2021 16:08:25: 44000000 INFO @ Sat, 11 Dec 2021 16:08:25: 39000000 INFO @ Sat, 11 Dec 2021 16:08:26: 39000000 INFO @ Sat, 11 Dec 2021 16:08:30: 45000000 INFO @ Sat, 11 Dec 2021 16:08:31: 40000000 INFO @ Sat, 11 Dec 2021 16:08:32: 40000000 INFO @ Sat, 11 Dec 2021 16:08:36: 46000000 INFO @ Sat, 11 Dec 2021 16:08:36: 41000000 INFO @ Sat, 11 Dec 2021 16:08:37: 41000000 INFO @ Sat, 11 Dec 2021 16:08:41: 47000000 INFO @ Sat, 11 Dec 2021 16:08:42: 42000000 INFO @ Sat, 11 Dec 2021 16:08:42: 42000000 INFO @ Sat, 11 Dec 2021 16:08:46: 48000000 INFO @ Sat, 11 Dec 2021 16:08:47: 43000000 INFO @ Sat, 11 Dec 2021 16:08:48: 43000000 INFO @ Sat, 11 Dec 2021 16:08:52: 49000000 INFO @ Sat, 11 Dec 2021 16:08:53: 44000000 INFO @ Sat, 11 Dec 2021 16:08:54: 44000000 INFO @ Sat, 11 Dec 2021 16:08:57: 50000000 INFO @ Sat, 11 Dec 2021 16:08:58: 45000000 INFO @ Sat, 11 Dec 2021 16:08:59: 45000000 INFO @ Sat, 11 Dec 2021 16:09:03: 51000000 INFO @ Sat, 11 Dec 2021 16:09:04: 46000000 INFO @ Sat, 11 Dec 2021 16:09:04: 46000000 INFO @ Sat, 11 Dec 2021 16:09:09: 52000000 INFO @ Sat, 11 Dec 2021 16:09:09: 47000000 INFO @ Sat, 11 Dec 2021 16:09:10: 47000000 INFO @ Sat, 11 Dec 2021 16:09:14: 53000000 INFO @ Sat, 11 Dec 2021 16:09:15: 48000000 INFO @ Sat, 11 Dec 2021 16:09:15: 48000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 16:09:20: 54000000 INFO @ Sat, 11 Dec 2021 16:09:20: 49000000 INFO @ Sat, 11 Dec 2021 16:09:21: 49000000 INFO @ Sat, 11 Dec 2021 16:09:26: 50000000 INFO @ Sat, 11 Dec 2021 16:09:26: 55000000 INFO @ Sat, 11 Dec 2021 16:09:27: 50000000 INFO @ Sat, 11 Dec 2021 16:09:31: 51000000 INFO @ Sat, 11 Dec 2021 16:09:31: 56000000 INFO @ Sat, 11 Dec 2021 16:09:31: 51000000 INFO @ Sat, 11 Dec 2021 16:09:36: 52000000 INFO @ Sat, 11 Dec 2021 16:09:36: 52000000 INFO @ Sat, 11 Dec 2021 16:09:37: 57000000 INFO @ Sat, 11 Dec 2021 16:09:41: 53000000 INFO @ Sat, 11 Dec 2021 16:09:42: 53000000 INFO @ Sat, 11 Dec 2021 16:09:42: 58000000 INFO @ Sat, 11 Dec 2021 16:09:47: 54000000 INFO @ Sat, 11 Dec 2021 16:09:48: 54000000 INFO @ Sat, 11 Dec 2021 16:09:48: 59000000 INFO @ Sat, 11 Dec 2021 16:09:52: 55000000 INFO @ Sat, 11 Dec 2021 16:09:53: 55000000 INFO @ Sat, 11 Dec 2021 16:09:53: 60000000 INFO @ Sat, 11 Dec 2021 16:09:58: 56000000 INFO @ Sat, 11 Dec 2021 16:09:58: 61000000 INFO @ Sat, 11 Dec 2021 16:09:59: 56000000 INFO @ Sat, 11 Dec 2021 16:10:03: 62000000 INFO @ Sat, 11 Dec 2021 16:10:04: 57000000 INFO @ Sat, 11 Dec 2021 16:10:04: 57000000 INFO @ Sat, 11 Dec 2021 16:10:09: 63000000 INFO @ Sat, 11 Dec 2021 16:10:09: 58000000 INFO @ Sat, 11 Dec 2021 16:10:10: 58000000 INFO @ Sat, 11 Dec 2021 16:10:15: 64000000 INFO @ Sat, 11 Dec 2021 16:10:15: 59000000 INFO @ Sat, 11 Dec 2021 16:10:16: 59000000 INFO @ Sat, 11 Dec 2021 16:10:21: 65000000 INFO @ Sat, 11 Dec 2021 16:10:21: 60000000 INFO @ Sat, 11 Dec 2021 16:10:21: 60000000 INFO @ Sat, 11 Dec 2021 16:10:26: 66000000 INFO @ Sat, 11 Dec 2021 16:10:26: 61000000 INFO @ Sat, 11 Dec 2021 16:10:27: 61000000 INFO @ Sat, 11 Dec 2021 16:10:30: 67000000 INFO @ Sat, 11 Dec 2021 16:10:32: 62000000 INFO @ Sat, 11 Dec 2021 16:10:33: 62000000 INFO @ Sat, 11 Dec 2021 16:10:34: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 16:10:34: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 16:10:34: #1 total tags in treatment: 26833509 INFO @ Sat, 11 Dec 2021 16:10:34: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:10:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:10:34: #1 tags after filtering in treatment: 18947628 INFO @ Sat, 11 Dec 2021 16:10:34: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 11 Dec 2021 16:10:34: #1 finished! INFO @ Sat, 11 Dec 2021 16:10:34: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:10:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:10:36: #2 number of paired peaks: 196 WARNING @ Sat, 11 Dec 2021 16:10:36: Fewer paired peaks (196) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 196 pairs to build model! INFO @ Sat, 11 Dec 2021 16:10:36: start model_add_line... INFO @ Sat, 11 Dec 2021 16:10:36: start X-correlation... INFO @ Sat, 11 Dec 2021 16:10:36: end of X-cor INFO @ Sat, 11 Dec 2021 16:10:36: #2 finished! INFO @ Sat, 11 Dec 2021 16:10:36: #2 predicted fragment length is 65 bps INFO @ Sat, 11 Dec 2021 16:10:36: #2 alternative fragment length(s) may be 2,23,25,65,94,121,173 bps INFO @ Sat, 11 Dec 2021 16:10:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.05_model.r WARNING @ Sat, 11 Dec 2021 16:10:36: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:10:36: #2 You may need to consider one of the other alternative d(s): 2,23,25,65,94,121,173 WARNING @ Sat, 11 Dec 2021 16:10:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:10:36: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:10:36: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:10:38: 63000000 INFO @ Sat, 11 Dec 2021 16:10:38: 63000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 16:10:43: 64000000 INFO @ Sat, 11 Dec 2021 16:10:44: 64000000 INFO @ Sat, 11 Dec 2021 16:10:49: 65000000 INFO @ Sat, 11 Dec 2021 16:10:50: 65000000 INFO @ Sat, 11 Dec 2021 16:10:55: 66000000 INFO @ Sat, 11 Dec 2021 16:10:55: 66000000 INFO @ Sat, 11 Dec 2021 16:11:00: 67000000 INFO @ Sat, 11 Dec 2021 16:11:01: 67000000 INFO @ Sat, 11 Dec 2021 16:11:04: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 16:11:04: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 16:11:04: #1 total tags in treatment: 26833509 INFO @ Sat, 11 Dec 2021 16:11:04: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:11:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:11:05: #1 tags after filtering in treatment: 18947628 INFO @ Sat, 11 Dec 2021 16:11:05: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 11 Dec 2021 16:11:05: #1 finished! INFO @ Sat, 11 Dec 2021 16:11:05: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:11:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:11:05: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 16:11:05: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 16:11:05: #1 total tags in treatment: 26833509 INFO @ Sat, 11 Dec 2021 16:11:05: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:11:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:11:05: #1 tags after filtering in treatment: 18947628 INFO @ Sat, 11 Dec 2021 16:11:05: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 11 Dec 2021 16:11:05: #1 finished! INFO @ Sat, 11 Dec 2021 16:11:05: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:11:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:11:06: #2 number of paired peaks: 196 WARNING @ Sat, 11 Dec 2021 16:11:06: Fewer paired peaks (196) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 196 pairs to build model! INFO @ Sat, 11 Dec 2021 16:11:06: start model_add_line... INFO @ Sat, 11 Dec 2021 16:11:06: start X-correlation... INFO @ Sat, 11 Dec 2021 16:11:06: end of X-cor INFO @ Sat, 11 Dec 2021 16:11:06: #2 finished! INFO @ Sat, 11 Dec 2021 16:11:06: #2 predicted fragment length is 65 bps INFO @ Sat, 11 Dec 2021 16:11:06: #2 alternative fragment length(s) may be 2,23,25,65,94,121,173 bps INFO @ Sat, 11 Dec 2021 16:11:06: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.10_model.r WARNING @ Sat, 11 Dec 2021 16:11:06: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:11:06: #2 You may need to consider one of the other alternative d(s): 2,23,25,65,94,121,173 WARNING @ Sat, 11 Dec 2021 16:11:06: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:11:06: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:11:06: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:11:07: #2 number of paired peaks: 196 WARNING @ Sat, 11 Dec 2021 16:11:07: Fewer paired peaks (196) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 196 pairs to build model! INFO @ Sat, 11 Dec 2021 16:11:07: start model_add_line... INFO @ Sat, 11 Dec 2021 16:11:07: start X-correlation... INFO @ Sat, 11 Dec 2021 16:11:07: end of X-cor INFO @ Sat, 11 Dec 2021 16:11:07: #2 finished! INFO @ Sat, 11 Dec 2021 16:11:07: #2 predicted fragment length is 65 bps INFO @ Sat, 11 Dec 2021 16:11:07: #2 alternative fragment length(s) may be 2,23,25,65,94,121,173 bps INFO @ Sat, 11 Dec 2021 16:11:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.20_model.r WARNING @ Sat, 11 Dec 2021 16:11:07: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:11:07: #2 You may need to consider one of the other alternative d(s): 2,23,25,65,94,121,173 WARNING @ Sat, 11 Dec 2021 16:11:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:11:07: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:11:07: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:11:11: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 16:11:29: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.05_peaks.xls INFO @ Sat, 11 Dec 2021 16:11:29: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 16:11:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.05_summits.bed INFO @ Sat, 11 Dec 2021 16:11:29: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9327 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 16:11:43: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 16:11:44: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 16:12:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.10_peaks.xls INFO @ Sat, 11 Dec 2021 16:12:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 16:12:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.10_summits.bed INFO @ Sat, 11 Dec 2021 16:12:02: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (3679 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 16:12:04: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.20_peaks.xls INFO @ Sat, 11 Dec 2021 16:12:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 16:12:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9103833/SRX9103833.20_summits.bed INFO @ Sat, 11 Dec 2021 16:12:04: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (388 records, 4 fields): 2 millis CompletedMACS2peakCalling