Job ID = 14167222 SRX = SRX9047376 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 51529595 spots for SRR12558904/SRR12558904.sra Written 51529595 spots for SRR12558904/SRR12558904.sra fastq に変換しました。 bowtie でマッピング中... Your job 14168284 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:12:26 51529595 reads; of these: 51529595 (100.00%) were paired; of these: 7233535 (14.04%) aligned concordantly 0 times 33028530 (64.10%) aligned concordantly exactly 1 time 11267530 (21.87%) aligned concordantly >1 times ---- 7233535 pairs aligned concordantly 0 times; of these: 2807272 (38.81%) aligned discordantly 1 time ---- 4426263 pairs aligned 0 times concordantly or discordantly; of these: 8852526 mates make up the pairs; of these: 3988661 (45.06%) aligned 0 times 2040528 (23.05%) aligned exactly 1 time 2823337 (31.89%) aligned >1 times 96.13% overall alignment rate Time searching: 02:12:27 Overall time: 02:12:27 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5576685 / 47040260 = 0.1186 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:51:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:51:06: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:51:06: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:51:13: 1000000 INFO @ Fri, 10 Dec 2021 13:51:20: 2000000 INFO @ Fri, 10 Dec 2021 13:51:27: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:51:34: 4000000 INFO @ Fri, 10 Dec 2021 13:51:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:51:36: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:51:36: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:51:41: 5000000 INFO @ Fri, 10 Dec 2021 13:51:45: 1000000 INFO @ Fri, 10 Dec 2021 13:51:49: 6000000 INFO @ Fri, 10 Dec 2021 13:51:54: 2000000 INFO @ Fri, 10 Dec 2021 13:51:57: 7000000 INFO @ Fri, 10 Dec 2021 13:52:02: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:52:04: 8000000 INFO @ Fri, 10 Dec 2021 13:52:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:52:06: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:52:06: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:52:11: 4000000 INFO @ Fri, 10 Dec 2021 13:52:11: 9000000 INFO @ Fri, 10 Dec 2021 13:52:14: 1000000 INFO @ Fri, 10 Dec 2021 13:52:19: 5000000 INFO @ Fri, 10 Dec 2021 13:52:19: 10000000 INFO @ Fri, 10 Dec 2021 13:52:22: 2000000 INFO @ Fri, 10 Dec 2021 13:52:27: 11000000 INFO @ Fri, 10 Dec 2021 13:52:27: 6000000 INFO @ Fri, 10 Dec 2021 13:52:30: 3000000 INFO @ Fri, 10 Dec 2021 13:52:35: 12000000 INFO @ Fri, 10 Dec 2021 13:52:36: 7000000 INFO @ Fri, 10 Dec 2021 13:52:38: 4000000 INFO @ Fri, 10 Dec 2021 13:52:44: 13000000 INFO @ Fri, 10 Dec 2021 13:52:44: 8000000 INFO @ Fri, 10 Dec 2021 13:52:47: 5000000 INFO @ Fri, 10 Dec 2021 13:52:52: 14000000 INFO @ Fri, 10 Dec 2021 13:52:53: 9000000 INFO @ Fri, 10 Dec 2021 13:52:55: 6000000 INFO @ Fri, 10 Dec 2021 13:53:00: 15000000 INFO @ Fri, 10 Dec 2021 13:53:01: 10000000 INFO @ Fri, 10 Dec 2021 13:53:03: 7000000 INFO @ Fri, 10 Dec 2021 13:53:08: 16000000 INFO @ Fri, 10 Dec 2021 13:53:09: 11000000 INFO @ Fri, 10 Dec 2021 13:53:11: 8000000 INFO @ Fri, 10 Dec 2021 13:53:16: 17000000 INFO @ Fri, 10 Dec 2021 13:53:18: 12000000 INFO @ Fri, 10 Dec 2021 13:53:19: 9000000 INFO @ Fri, 10 Dec 2021 13:53:24: 18000000 INFO @ Fri, 10 Dec 2021 13:53:26: 13000000 INFO @ Fri, 10 Dec 2021 13:53:27: 10000000 INFO @ Fri, 10 Dec 2021 13:53:32: 19000000 INFO @ Fri, 10 Dec 2021 13:53:34: 14000000 INFO @ Fri, 10 Dec 2021 13:53:35: 11000000 INFO @ Fri, 10 Dec 2021 13:53:40: 20000000 INFO @ Fri, 10 Dec 2021 13:53:43: 15000000 INFO @ Fri, 10 Dec 2021 13:53:43: 12000000 INFO @ Fri, 10 Dec 2021 13:53:48: 21000000 INFO @ Fri, 10 Dec 2021 13:53:51: 16000000 INFO @ Fri, 10 Dec 2021 13:53:51: 13000000 INFO @ Fri, 10 Dec 2021 13:53:55: 22000000 INFO @ Fri, 10 Dec 2021 13:53:59: 14000000 INFO @ Fri, 10 Dec 2021 13:54:00: 17000000 INFO @ Fri, 10 Dec 2021 13:54:03: 23000000 INFO @ Fri, 10 Dec 2021 13:54:06: 15000000 INFO @ Fri, 10 Dec 2021 13:54:08: 18000000 INFO @ Fri, 10 Dec 2021 13:54:10: 24000000 INFO @ Fri, 10 Dec 2021 13:54:14: 16000000 INFO @ Fri, 10 Dec 2021 13:54:17: 19000000 INFO @ Fri, 10 Dec 2021 13:54:18: 25000000 INFO @ Fri, 10 Dec 2021 13:54:21: 17000000 INFO @ Fri, 10 Dec 2021 13:54:25: 20000000 INFO @ Fri, 10 Dec 2021 13:54:25: 26000000 INFO @ Fri, 10 Dec 2021 13:54:28: 18000000 INFO @ Fri, 10 Dec 2021 13:54:33: 27000000 INFO @ Fri, 10 Dec 2021 13:54:33: 21000000 INFO @ Fri, 10 Dec 2021 13:54:35: 19000000 INFO @ Fri, 10 Dec 2021 13:54:40: 28000000 INFO @ Fri, 10 Dec 2021 13:54:42: 22000000 INFO @ Fri, 10 Dec 2021 13:54:43: 20000000 INFO @ Fri, 10 Dec 2021 13:54:48: 29000000 INFO @ Fri, 10 Dec 2021 13:54:50: 21000000 INFO @ Fri, 10 Dec 2021 13:54:50: 23000000 INFO @ Fri, 10 Dec 2021 13:54:55: 30000000 INFO @ Fri, 10 Dec 2021 13:54:57: 22000000 INFO @ Fri, 10 Dec 2021 13:54:59: 24000000 INFO @ Fri, 10 Dec 2021 13:55:02: 31000000 INFO @ Fri, 10 Dec 2021 13:55:05: 23000000 INFO @ Fri, 10 Dec 2021 13:55:07: 25000000 INFO @ Fri, 10 Dec 2021 13:55:10: 32000000 INFO @ Fri, 10 Dec 2021 13:55:13: 24000000 INFO @ Fri, 10 Dec 2021 13:55:16: 26000000 INFO @ Fri, 10 Dec 2021 13:55:18: 33000000 INFO @ Fri, 10 Dec 2021 13:55:20: 25000000 INFO @ Fri, 10 Dec 2021 13:55:24: 27000000 INFO @ Fri, 10 Dec 2021 13:55:26: 34000000 INFO @ Fri, 10 Dec 2021 13:55:28: 26000000 INFO @ Fri, 10 Dec 2021 13:55:32: 28000000 INFO @ Fri, 10 Dec 2021 13:55:33: 35000000 INFO @ Fri, 10 Dec 2021 13:55:35: 27000000 INFO @ Fri, 10 Dec 2021 13:55:41: 36000000 INFO @ Fri, 10 Dec 2021 13:55:41: 29000000 INFO @ Fri, 10 Dec 2021 13:55:43: 28000000 INFO @ Fri, 10 Dec 2021 13:55:48: 37000000 INFO @ Fri, 10 Dec 2021 13:55:49: 30000000 INFO @ Fri, 10 Dec 2021 13:55:50: 29000000 INFO @ Fri, 10 Dec 2021 13:55:56: 38000000 INFO @ Fri, 10 Dec 2021 13:55:57: 31000000 INFO @ Fri, 10 Dec 2021 13:55:57: 30000000 INFO @ Fri, 10 Dec 2021 13:56:03: 39000000 INFO @ Fri, 10 Dec 2021 13:56:05: 31000000 INFO @ Fri, 10 Dec 2021 13:56:05: 32000000 INFO @ Fri, 10 Dec 2021 13:56:10: 40000000 INFO @ Fri, 10 Dec 2021 13:56:12: 32000000 INFO @ Fri, 10 Dec 2021 13:56:13: 33000000 INFO @ Fri, 10 Dec 2021 13:56:18: 41000000 INFO @ Fri, 10 Dec 2021 13:56:19: 33000000 INFO @ Fri, 10 Dec 2021 13:56:20: 34000000 INFO @ Fri, 10 Dec 2021 13:56:25: 42000000 INFO @ Fri, 10 Dec 2021 13:56:28: 34000000 INFO @ Fri, 10 Dec 2021 13:56:28: 35000000 INFO @ Fri, 10 Dec 2021 13:56:33: 43000000 INFO @ Fri, 10 Dec 2021 13:56:35: 35000000 INFO @ Fri, 10 Dec 2021 13:56:37: 36000000 INFO @ Fri, 10 Dec 2021 13:56:41: 44000000 INFO @ Fri, 10 Dec 2021 13:56:43: 36000000 INFO @ Fri, 10 Dec 2021 13:56:45: 37000000 INFO @ Fri, 10 Dec 2021 13:56:49: 45000000 INFO @ Fri, 10 Dec 2021 13:56:51: 37000000 INFO @ Fri, 10 Dec 2021 13:56:53: 38000000 INFO @ Fri, 10 Dec 2021 13:56:57: 46000000 INFO @ Fri, 10 Dec 2021 13:56:58: 38000000 INFO @ Fri, 10 Dec 2021 13:57:01: 39000000 INFO @ Fri, 10 Dec 2021 13:57:04: 47000000 INFO @ Fri, 10 Dec 2021 13:57:06: 39000000 INFO @ Fri, 10 Dec 2021 13:57:09: 40000000 INFO @ Fri, 10 Dec 2021 13:57:11: 48000000 INFO @ Fri, 10 Dec 2021 13:57:13: 40000000 INFO @ Fri, 10 Dec 2021 13:57:17: 41000000 INFO @ Fri, 10 Dec 2021 13:57:19: 49000000 INFO @ Fri, 10 Dec 2021 13:57:21: 41000000 INFO @ Fri, 10 Dec 2021 13:57:26: 42000000 INFO @ Fri, 10 Dec 2021 13:57:28: 50000000 INFO @ Fri, 10 Dec 2021 13:57:28: 42000000 INFO @ Fri, 10 Dec 2021 13:57:34: 43000000 INFO @ Fri, 10 Dec 2021 13:57:36: 51000000 INFO @ Fri, 10 Dec 2021 13:57:36: 43000000 INFO @ Fri, 10 Dec 2021 13:57:43: 44000000 INFO @ Fri, 10 Dec 2021 13:57:43: 52000000 INFO @ Fri, 10 Dec 2021 13:57:44: 44000000 INFO @ Fri, 10 Dec 2021 13:57:50: 53000000 INFO @ Fri, 10 Dec 2021 13:57:51: 45000000 INFO @ Fri, 10 Dec 2021 13:57:52: 45000000 INFO @ Fri, 10 Dec 2021 13:57:58: 54000000 INFO @ Fri, 10 Dec 2021 13:58:00: 46000000 INFO @ Fri, 10 Dec 2021 13:58:00: 46000000 INFO @ Fri, 10 Dec 2021 13:58:06: 55000000 INFO @ Fri, 10 Dec 2021 13:58:08: 47000000 INFO @ Fri, 10 Dec 2021 13:58:08: 47000000 INFO @ Fri, 10 Dec 2021 13:58:13: 56000000 INFO @ Fri, 10 Dec 2021 13:58:16: 48000000 INFO @ Fri, 10 Dec 2021 13:58:16: 48000000 INFO @ Fri, 10 Dec 2021 13:58:21: 57000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 13:58:25: 49000000 INFO @ Fri, 10 Dec 2021 13:58:25: 49000000 INFO @ Fri, 10 Dec 2021 13:58:29: 58000000 INFO @ Fri, 10 Dec 2021 13:58:34: 50000000 INFO @ Fri, 10 Dec 2021 13:58:34: 50000000 INFO @ Fri, 10 Dec 2021 13:58:36: 59000000 INFO @ Fri, 10 Dec 2021 13:58:42: 51000000 INFO @ Fri, 10 Dec 2021 13:58:42: 51000000 INFO @ Fri, 10 Dec 2021 13:58:44: 60000000 INFO @ Fri, 10 Dec 2021 13:58:50: 52000000 INFO @ Fri, 10 Dec 2021 13:58:51: 52000000 INFO @ Fri, 10 Dec 2021 13:58:51: 61000000 INFO @ Fri, 10 Dec 2021 13:58:57: 53000000 INFO @ Fri, 10 Dec 2021 13:58:59: 62000000 INFO @ Fri, 10 Dec 2021 13:59:00: 53000000 INFO @ Fri, 10 Dec 2021 13:59:05: 54000000 INFO @ Fri, 10 Dec 2021 13:59:06: 63000000 INFO @ Fri, 10 Dec 2021 13:59:08: 54000000 INFO @ Fri, 10 Dec 2021 13:59:13: 55000000 INFO @ Fri, 10 Dec 2021 13:59:14: 64000000 INFO @ Fri, 10 Dec 2021 13:59:17: 55000000 INFO @ Fri, 10 Dec 2021 13:59:21: 56000000 INFO @ Fri, 10 Dec 2021 13:59:22: 65000000 INFO @ Fri, 10 Dec 2021 13:59:25: 56000000 INFO @ Fri, 10 Dec 2021 13:59:29: 57000000 INFO @ Fri, 10 Dec 2021 13:59:30: 66000000 INFO @ Fri, 10 Dec 2021 13:59:34: 57000000 INFO @ Fri, 10 Dec 2021 13:59:37: 58000000 INFO @ Fri, 10 Dec 2021 13:59:38: 67000000 INFO @ Fri, 10 Dec 2021 13:59:43: 58000000 INFO @ Fri, 10 Dec 2021 13:59:45: 59000000 INFO @ Fri, 10 Dec 2021 13:59:46: 68000000 INFO @ Fri, 10 Dec 2021 13:59:51: 59000000 INFO @ Fri, 10 Dec 2021 13:59:53: 60000000 INFO @ Fri, 10 Dec 2021 13:59:55: 69000000 INFO @ Fri, 10 Dec 2021 14:00:00: 60000000 INFO @ Fri, 10 Dec 2021 14:00:01: 61000000 INFO @ Fri, 10 Dec 2021 14:00:03: 70000000 INFO @ Fri, 10 Dec 2021 14:00:09: 62000000 INFO @ Fri, 10 Dec 2021 14:00:09: 61000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 14:00:11: 71000000 INFO @ Fri, 10 Dec 2021 14:00:17: 63000000 INFO @ Fri, 10 Dec 2021 14:00:18: 62000000 INFO @ Fri, 10 Dec 2021 14:00:20: 72000000 INFO @ Fri, 10 Dec 2021 14:00:25: 64000000 INFO @ Fri, 10 Dec 2021 14:00:27: 63000000 INFO @ Fri, 10 Dec 2021 14:00:28: 73000000 INFO @ Fri, 10 Dec 2021 14:00:33: 65000000 INFO @ Fri, 10 Dec 2021 14:00:35: 64000000 INFO @ Fri, 10 Dec 2021 14:00:36: 74000000 INFO @ Fri, 10 Dec 2021 14:00:41: 66000000 INFO @ Fri, 10 Dec 2021 14:00:44: 65000000 INFO @ Fri, 10 Dec 2021 14:00:44: 75000000 INFO @ Fri, 10 Dec 2021 14:00:49: 67000000 INFO @ Fri, 10 Dec 2021 14:00:52: 76000000 INFO @ Fri, 10 Dec 2021 14:00:53: 66000000 INFO @ Fri, 10 Dec 2021 14:00:57: 68000000 INFO @ Fri, 10 Dec 2021 14:01:00: 77000000 INFO @ Fri, 10 Dec 2021 14:01:02: 67000000 INFO @ Fri, 10 Dec 2021 14:01:05: 69000000 INFO @ Fri, 10 Dec 2021 14:01:07: 78000000 INFO @ Fri, 10 Dec 2021 14:01:11: 68000000 INFO @ Fri, 10 Dec 2021 14:01:12: 70000000 INFO @ Fri, 10 Dec 2021 14:01:15: 79000000 INFO @ Fri, 10 Dec 2021 14:01:20: 69000000 INFO @ Fri, 10 Dec 2021 14:01:20: 71000000 INFO @ Fri, 10 Dec 2021 14:01:22: 80000000 INFO @ Fri, 10 Dec 2021 14:01:28: 70000000 INFO @ Fri, 10 Dec 2021 14:01:29: 72000000 INFO @ Fri, 10 Dec 2021 14:01:30: 81000000 INFO @ Fri, 10 Dec 2021 14:01:37: 71000000 INFO @ Fri, 10 Dec 2021 14:01:37: 73000000 INFO @ Fri, 10 Dec 2021 14:01:38: 82000000 INFO @ Fri, 10 Dec 2021 14:01:44: 72000000 INFO @ Fri, 10 Dec 2021 14:01:45: 74000000 INFO @ Fri, 10 Dec 2021 14:01:46: 83000000 INFO @ Fri, 10 Dec 2021 14:01:53: 73000000 INFO @ Fri, 10 Dec 2021 14:01:54: 84000000 INFO @ Fri, 10 Dec 2021 14:01:54: 75000000 INFO @ Fri, 10 Dec 2021 14:02:01: 74000000 INFO @ Fri, 10 Dec 2021 14:02:01: 85000000 INFO @ Fri, 10 Dec 2021 14:02:02: 76000000 INFO @ Fri, 10 Dec 2021 14:02:09: 75000000 INFO @ Fri, 10 Dec 2021 14:02:09: 86000000 INFO @ Fri, 10 Dec 2021 14:02:10: 77000000 INFO @ Fri, 10 Dec 2021 14:02:17: 87000000 INFO @ Fri, 10 Dec 2021 14:02:18: 76000000 INFO @ Fri, 10 Dec 2021 14:02:18: 78000000 INFO @ Fri, 10 Dec 2021 14:02:25: #1 tag size is determined as 42 bps INFO @ Fri, 10 Dec 2021 14:02:25: #1 tag size = 42 INFO @ Fri, 10 Dec 2021 14:02:25: #1 total tags in treatment: 38849937 INFO @ Fri, 10 Dec 2021 14:02:25: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 14:02:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 14:02:26: 79000000 INFO @ Fri, 10 Dec 2021 14:02:26: #1 tags after filtering in treatment: 19891324 INFO @ Fri, 10 Dec 2021 14:02:26: #1 Redundant rate of treatment: 0.49 INFO @ Fri, 10 Dec 2021 14:02:26: #1 finished! INFO @ Fri, 10 Dec 2021 14:02:26: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 14:02:26: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 14:02:27: 77000000 INFO @ Fri, 10 Dec 2021 14:02:28: #2 number of paired peaks: 5084 INFO @ Fri, 10 Dec 2021 14:02:28: start model_add_line... INFO @ Fri, 10 Dec 2021 14:02:29: start X-correlation... INFO @ Fri, 10 Dec 2021 14:02:29: end of X-cor INFO @ Fri, 10 Dec 2021 14:02:29: #2 finished! INFO @ Fri, 10 Dec 2021 14:02:29: #2 predicted fragment length is 289 bps INFO @ Fri, 10 Dec 2021 14:02:29: #2 alternative fragment length(s) may be 289 bps INFO @ Fri, 10 Dec 2021 14:02:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.05_model.r INFO @ Fri, 10 Dec 2021 14:02:29: #3 Call peaks... INFO @ Fri, 10 Dec 2021 14:02:29: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 14:02:33: 80000000 INFO @ Fri, 10 Dec 2021 14:02:35: 78000000 INFO @ Fri, 10 Dec 2021 14:02:40: 81000000 INFO @ Fri, 10 Dec 2021 14:02:44: 79000000 INFO @ Fri, 10 Dec 2021 14:02:47: 82000000 INFO @ Fri, 10 Dec 2021 14:02:53: 80000000 INFO @ Fri, 10 Dec 2021 14:02:54: 83000000 INFO @ Fri, 10 Dec 2021 14:03:01: 84000000 INFO @ Fri, 10 Dec 2021 14:03:02: 81000000 INFO @ Fri, 10 Dec 2021 14:03:08: 85000000 INFO @ Fri, 10 Dec 2021 14:03:11: 82000000 INFO @ Fri, 10 Dec 2021 14:03:16: 86000000 INFO @ Fri, 10 Dec 2021 14:03:20: 83000000 INFO @ Fri, 10 Dec 2021 14:03:23: 87000000 INFO @ Fri, 10 Dec 2021 14:03:29: 84000000 INFO @ Fri, 10 Dec 2021 14:03:30: #1 tag size is determined as 42 bps INFO @ Fri, 10 Dec 2021 14:03:30: #1 tag size = 42 INFO @ Fri, 10 Dec 2021 14:03:30: #1 total tags in treatment: 38849937 INFO @ Fri, 10 Dec 2021 14:03:30: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 14:03:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 14:03:31: #1 tags after filtering in treatment: 19891324 INFO @ Fri, 10 Dec 2021 14:03:31: #1 Redundant rate of treatment: 0.49 INFO @ Fri, 10 Dec 2021 14:03:31: #1 finished! INFO @ Fri, 10 Dec 2021 14:03:31: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 14:03:31: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 14:03:33: #2 number of paired peaks: 5084 INFO @ Fri, 10 Dec 2021 14:03:33: start model_add_line... INFO @ Fri, 10 Dec 2021 14:03:34: start X-correlation... INFO @ Fri, 10 Dec 2021 14:03:34: end of X-cor INFO @ Fri, 10 Dec 2021 14:03:34: #2 finished! INFO @ Fri, 10 Dec 2021 14:03:34: #2 predicted fragment length is 289 bps INFO @ Fri, 10 Dec 2021 14:03:34: #2 alternative fragment length(s) may be 289 bps INFO @ Fri, 10 Dec 2021 14:03:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.20_model.r INFO @ Fri, 10 Dec 2021 14:03:34: #3 Call peaks... INFO @ Fri, 10 Dec 2021 14:03:34: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 14:03:38: 85000000 INFO @ Fri, 10 Dec 2021 14:03:47: 86000000 INFO @ Fri, 10 Dec 2021 14:03:52: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 14:03:55: 87000000 INFO @ Fri, 10 Dec 2021 14:04:03: #1 tag size is determined as 42 bps INFO @ Fri, 10 Dec 2021 14:04:03: #1 tag size = 42 INFO @ Fri, 10 Dec 2021 14:04:03: #1 total tags in treatment: 38849937 INFO @ Fri, 10 Dec 2021 14:04:03: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 14:04:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 14:04:04: #1 tags after filtering in treatment: 19891324 INFO @ Fri, 10 Dec 2021 14:04:04: #1 Redundant rate of treatment: 0.49 INFO @ Fri, 10 Dec 2021 14:04:04: #1 finished! INFO @ Fri, 10 Dec 2021 14:04:04: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 14:04:04: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 14:04:07: #2 number of paired peaks: 5084 INFO @ Fri, 10 Dec 2021 14:04:07: start model_add_line... INFO @ Fri, 10 Dec 2021 14:04:07: start X-correlation... INFO @ Fri, 10 Dec 2021 14:04:07: end of X-cor INFO @ Fri, 10 Dec 2021 14:04:07: #2 finished! INFO @ Fri, 10 Dec 2021 14:04:07: #2 predicted fragment length is 289 bps INFO @ Fri, 10 Dec 2021 14:04:07: #2 alternative fragment length(s) may be 289 bps INFO @ Fri, 10 Dec 2021 14:04:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.10_model.r INFO @ Fri, 10 Dec 2021 14:04:07: #3 Call peaks... INFO @ Fri, 10 Dec 2021 14:04:07: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 14:04:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.05_peaks.xls INFO @ Fri, 10 Dec 2021 14:04:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 14:04:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.05_summits.bed INFO @ Fri, 10 Dec 2021 14:04:19: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (10430 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 14:04:56: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 14:05:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.20_peaks.xls INFO @ Fri, 10 Dec 2021 14:05:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 14:05:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.20_summits.bed INFO @ Fri, 10 Dec 2021 14:05:22: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (5962 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 14:05:31: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 14:05:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.10_peaks.xls INFO @ Fri, 10 Dec 2021 14:05:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 14:05:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9047376/SRX9047376.10_summits.bed INFO @ Fri, 10 Dec 2021 14:05:58: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (8057 records, 4 fields): 13 millis CompletedMACS2peakCalling