Job ID = 14171741 SRX = SRX9008827 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 46214844 spots for SRR12518299/SRR12518299.sra Written 46214844 spots for SRR12518299/SRR12518299.sra fastq に変換しました。 bowtie でマッピング中... Your job 14172448 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:58:00 46214844 reads; of these: 46214844 (100.00%) were paired; of these: 6923952 (14.98%) aligned concordantly 0 times 33026781 (71.46%) aligned concordantly exactly 1 time 6264111 (13.55%) aligned concordantly >1 times ---- 6923952 pairs aligned concordantly 0 times; of these: 2059762 (29.75%) aligned discordantly 1 time ---- 4864190 pairs aligned 0 times concordantly or discordantly; of these: 9728380 mates make up the pairs; of these: 6555164 (67.38%) aligned 0 times 2031856 (20.89%) aligned exactly 1 time 1141360 (11.73%) aligned >1 times 92.91% overall alignment rate Time searching: 00:58:00 Overall time: 00:58:00 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1175158 / 40245773 = 0.0292 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 14:00:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 14:00:31: #1 read tag files... INFO @ Sat, 11 Dec 2021 14:00:31: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 14:00:37: 1000000 INFO @ Sat, 11 Dec 2021 14:00:43: 2000000 INFO @ Sat, 11 Dec 2021 14:00:48: 3000000 INFO @ Sat, 11 Dec 2021 14:00:54: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 14:01:00: 5000000 INFO @ Sat, 11 Dec 2021 14:01:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 14:01:01: #1 read tag files... INFO @ Sat, 11 Dec 2021 14:01:01: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 14:01:06: 6000000 INFO @ Sat, 11 Dec 2021 14:01:07: 1000000 INFO @ Sat, 11 Dec 2021 14:01:12: 7000000 INFO @ Sat, 11 Dec 2021 14:01:13: 2000000 INFO @ Sat, 11 Dec 2021 14:01:18: 3000000 INFO @ Sat, 11 Dec 2021 14:01:18: 8000000 INFO @ Sat, 11 Dec 2021 14:01:24: 4000000 INFO @ Sat, 11 Dec 2021 14:01:25: 9000000 INFO @ Sat, 11 Dec 2021 14:01:29: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 14:01:31: 10000000 INFO @ Sat, 11 Dec 2021 14:01:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 14:01:31: #1 read tag files... INFO @ Sat, 11 Dec 2021 14:01:31: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 14:01:35: 6000000 INFO @ Sat, 11 Dec 2021 14:01:37: 11000000 INFO @ Sat, 11 Dec 2021 14:01:38: 1000000 INFO @ Sat, 11 Dec 2021 14:01:40: 7000000 INFO @ Sat, 11 Dec 2021 14:01:43: 12000000 INFO @ Sat, 11 Dec 2021 14:01:44: 2000000 INFO @ Sat, 11 Dec 2021 14:01:46: 8000000 INFO @ Sat, 11 Dec 2021 14:01:49: 13000000 INFO @ Sat, 11 Dec 2021 14:01:51: 3000000 INFO @ Sat, 11 Dec 2021 14:01:51: 9000000 INFO @ Sat, 11 Dec 2021 14:01:55: 14000000 INFO @ Sat, 11 Dec 2021 14:01:57: 4000000 INFO @ Sat, 11 Dec 2021 14:01:57: 10000000 INFO @ Sat, 11 Dec 2021 14:02:01: 15000000 INFO @ Sat, 11 Dec 2021 14:02:03: 11000000 INFO @ Sat, 11 Dec 2021 14:02:03: 5000000 INFO @ Sat, 11 Dec 2021 14:02:07: 16000000 INFO @ Sat, 11 Dec 2021 14:02:08: 12000000 INFO @ Sat, 11 Dec 2021 14:02:10: 6000000 INFO @ Sat, 11 Dec 2021 14:02:13: 17000000 INFO @ Sat, 11 Dec 2021 14:02:14: 13000000 INFO @ Sat, 11 Dec 2021 14:02:16: 7000000 INFO @ Sat, 11 Dec 2021 14:02:19: 18000000 INFO @ Sat, 11 Dec 2021 14:02:20: 14000000 INFO @ Sat, 11 Dec 2021 14:02:22: 8000000 INFO @ Sat, 11 Dec 2021 14:02:25: 19000000 INFO @ Sat, 11 Dec 2021 14:02:26: 15000000 INFO @ Sat, 11 Dec 2021 14:02:29: 9000000 INFO @ Sat, 11 Dec 2021 14:02:31: 20000000 INFO @ Sat, 11 Dec 2021 14:02:31: 16000000 INFO @ Sat, 11 Dec 2021 14:02:35: 10000000 INFO @ Sat, 11 Dec 2021 14:02:37: 17000000 INFO @ Sat, 11 Dec 2021 14:02:37: 21000000 INFO @ Sat, 11 Dec 2021 14:02:41: 11000000 INFO @ Sat, 11 Dec 2021 14:02:42: 18000000 INFO @ Sat, 11 Dec 2021 14:02:43: 22000000 INFO @ Sat, 11 Dec 2021 14:02:46: 12000000 INFO @ Sat, 11 Dec 2021 14:02:48: 19000000 INFO @ Sat, 11 Dec 2021 14:02:49: 23000000 INFO @ Sat, 11 Dec 2021 14:02:52: 13000000 INFO @ Sat, 11 Dec 2021 14:02:53: 20000000 INFO @ Sat, 11 Dec 2021 14:02:55: 24000000 INFO @ Sat, 11 Dec 2021 14:02:58: 14000000 INFO @ Sat, 11 Dec 2021 14:02:59: 21000000 INFO @ Sat, 11 Dec 2021 14:03:01: 25000000 INFO @ Sat, 11 Dec 2021 14:03:04: 15000000 INFO @ Sat, 11 Dec 2021 14:03:04: 22000000 INFO @ Sat, 11 Dec 2021 14:03:07: 26000000 INFO @ Sat, 11 Dec 2021 14:03:10: 23000000 INFO @ Sat, 11 Dec 2021 14:03:10: 16000000 INFO @ Sat, 11 Dec 2021 14:03:13: 27000000 INFO @ Sat, 11 Dec 2021 14:03:16: 24000000 INFO @ Sat, 11 Dec 2021 14:03:16: 17000000 INFO @ Sat, 11 Dec 2021 14:03:19: 28000000 INFO @ Sat, 11 Dec 2021 14:03:21: 25000000 INFO @ Sat, 11 Dec 2021 14:03:22: 18000000 INFO @ Sat, 11 Dec 2021 14:03:25: 29000000 INFO @ Sat, 11 Dec 2021 14:03:27: 26000000 INFO @ Sat, 11 Dec 2021 14:03:28: 19000000 INFO @ Sat, 11 Dec 2021 14:03:31: 30000000 INFO @ Sat, 11 Dec 2021 14:03:32: 27000000 INFO @ Sat, 11 Dec 2021 14:03:34: 20000000 INFO @ Sat, 11 Dec 2021 14:03:37: 31000000 INFO @ Sat, 11 Dec 2021 14:03:38: 28000000 INFO @ Sat, 11 Dec 2021 14:03:40: 21000000 INFO @ Sat, 11 Dec 2021 14:03:43: 32000000 INFO @ Sat, 11 Dec 2021 14:03:43: 29000000 INFO @ Sat, 11 Dec 2021 14:03:46: 22000000 INFO @ Sat, 11 Dec 2021 14:03:49: 30000000 INFO @ Sat, 11 Dec 2021 14:03:49: 33000000 INFO @ Sat, 11 Dec 2021 14:03:52: 23000000 INFO @ Sat, 11 Dec 2021 14:03:54: 31000000 INFO @ Sat, 11 Dec 2021 14:03:55: 34000000 INFO @ Sat, 11 Dec 2021 14:03:58: 24000000 INFO @ Sat, 11 Dec 2021 14:04:00: 32000000 INFO @ Sat, 11 Dec 2021 14:04:01: 35000000 INFO @ Sat, 11 Dec 2021 14:04:04: 25000000 INFO @ Sat, 11 Dec 2021 14:04:05: 33000000 INFO @ Sat, 11 Dec 2021 14:04:07: 36000000 INFO @ Sat, 11 Dec 2021 14:04:10: 26000000 INFO @ Sat, 11 Dec 2021 14:04:11: 34000000 INFO @ Sat, 11 Dec 2021 14:04:13: 37000000 INFO @ Sat, 11 Dec 2021 14:04:16: 27000000 INFO @ Sat, 11 Dec 2021 14:04:16: 35000000 INFO @ Sat, 11 Dec 2021 14:04:19: 38000000 INFO @ Sat, 11 Dec 2021 14:04:22: 36000000 INFO @ Sat, 11 Dec 2021 14:04:22: 28000000 INFO @ Sat, 11 Dec 2021 14:04:25: 39000000 INFO @ Sat, 11 Dec 2021 14:04:28: 37000000 INFO @ Sat, 11 Dec 2021 14:04:28: 29000000 INFO @ Sat, 11 Dec 2021 14:04:31: 40000000 INFO @ Sat, 11 Dec 2021 14:04:33: 38000000 INFO @ Sat, 11 Dec 2021 14:04:34: 30000000 INFO @ Sat, 11 Dec 2021 14:04:37: 41000000 INFO @ Sat, 11 Dec 2021 14:04:39: 39000000 INFO @ Sat, 11 Dec 2021 14:04:40: 31000000 INFO @ Sat, 11 Dec 2021 14:04:43: 42000000 INFO @ Sat, 11 Dec 2021 14:04:44: 40000000 INFO @ Sat, 11 Dec 2021 14:04:46: 32000000 INFO @ Sat, 11 Dec 2021 14:04:49: 43000000 INFO @ Sat, 11 Dec 2021 14:04:50: 41000000 INFO @ Sat, 11 Dec 2021 14:04:52: 33000000 INFO @ Sat, 11 Dec 2021 14:04:55: 42000000 INFO @ Sat, 11 Dec 2021 14:04:55: 44000000 INFO @ Sat, 11 Dec 2021 14:04:58: 34000000 INFO @ Sat, 11 Dec 2021 14:05:01: 43000000 INFO @ Sat, 11 Dec 2021 14:05:01: 45000000 INFO @ Sat, 11 Dec 2021 14:05:04: 35000000 INFO @ Sat, 11 Dec 2021 14:05:06: 44000000 INFO @ Sat, 11 Dec 2021 14:05:07: 46000000 INFO @ Sat, 11 Dec 2021 14:05:10: 36000000 INFO @ Sat, 11 Dec 2021 14:05:12: 45000000 INFO @ Sat, 11 Dec 2021 14:05:13: 47000000 INFO @ Sat, 11 Dec 2021 14:05:16: 37000000 INFO @ Sat, 11 Dec 2021 14:05:17: 46000000 INFO @ Sat, 11 Dec 2021 14:05:19: 48000000 INFO @ Sat, 11 Dec 2021 14:05:22: 38000000 INFO @ Sat, 11 Dec 2021 14:05:23: 47000000 INFO @ Sat, 11 Dec 2021 14:05:25: 49000000 INFO @ Sat, 11 Dec 2021 14:05:28: 39000000 INFO @ Sat, 11 Dec 2021 14:05:28: 48000000 INFO @ Sat, 11 Dec 2021 14:05:31: 50000000 INFO @ Sat, 11 Dec 2021 14:05:34: 49000000 INFO @ Sat, 11 Dec 2021 14:05:34: 40000000 INFO @ Sat, 11 Dec 2021 14:05:37: 51000000 INFO @ Sat, 11 Dec 2021 14:05:39: 50000000 INFO @ Sat, 11 Dec 2021 14:05:40: 41000000 INFO @ Sat, 11 Dec 2021 14:05:43: 52000000 INFO @ Sat, 11 Dec 2021 14:05:45: 51000000 INFO @ Sat, 11 Dec 2021 14:05:46: 42000000 INFO @ Sat, 11 Dec 2021 14:05:49: 53000000 INFO @ Sat, 11 Dec 2021 14:05:50: 52000000 INFO @ Sat, 11 Dec 2021 14:05:52: 43000000 INFO @ Sat, 11 Dec 2021 14:05:55: 54000000 INFO @ Sat, 11 Dec 2021 14:05:56: 53000000 INFO @ Sat, 11 Dec 2021 14:05:58: 44000000 INFO @ Sat, 11 Dec 2021 14:06:01: 55000000 INFO @ Sat, 11 Dec 2021 14:06:01: 54000000 INFO @ Sat, 11 Dec 2021 14:06:04: 45000000 INFO @ Sat, 11 Dec 2021 14:06:07: 55000000 INFO @ Sat, 11 Dec 2021 14:06:07: 56000000 INFO @ Sat, 11 Dec 2021 14:06:10: 46000000 INFO @ Sat, 11 Dec 2021 14:06:12: 56000000 INFO @ Sat, 11 Dec 2021 14:06:13: 57000000 INFO @ Sat, 11 Dec 2021 14:06:16: 47000000 INFO @ Sat, 11 Dec 2021 14:06:18: 57000000 INFO @ Sat, 11 Dec 2021 14:06:19: 58000000 INFO @ Sat, 11 Dec 2021 14:06:22: 48000000 INFO @ Sat, 11 Dec 2021 14:06:24: 58000000 INFO @ Sat, 11 Dec 2021 14:06:25: 59000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 14:06:28: 49000000 INFO @ Sat, 11 Dec 2021 14:06:29: 59000000 INFO @ Sat, 11 Dec 2021 14:06:31: 60000000 INFO @ Sat, 11 Dec 2021 14:06:34: 50000000 INFO @ Sat, 11 Dec 2021 14:06:35: 60000000 INFO @ Sat, 11 Dec 2021 14:06:38: 61000000 INFO @ Sat, 11 Dec 2021 14:06:40: 51000000 INFO @ Sat, 11 Dec 2021 14:06:41: 61000000 INFO @ Sat, 11 Dec 2021 14:06:44: 62000000 INFO @ Sat, 11 Dec 2021 14:06:46: 52000000 INFO @ Sat, 11 Dec 2021 14:06:46: 62000000 INFO @ Sat, 11 Dec 2021 14:06:50: 63000000 INFO @ Sat, 11 Dec 2021 14:06:52: 53000000 INFO @ Sat, 11 Dec 2021 14:06:52: 63000000 INFO @ Sat, 11 Dec 2021 14:06:57: 64000000 INFO @ Sat, 11 Dec 2021 14:06:57: 54000000 INFO @ Sat, 11 Dec 2021 14:06:58: 64000000 INFO @ Sat, 11 Dec 2021 14:07:03: 65000000 INFO @ Sat, 11 Dec 2021 14:07:04: 55000000 INFO @ Sat, 11 Dec 2021 14:07:04: 65000000 INFO @ Sat, 11 Dec 2021 14:07:10: 66000000 INFO @ Sat, 11 Dec 2021 14:07:10: 56000000 INFO @ Sat, 11 Dec 2021 14:07:11: 66000000 INFO @ Sat, 11 Dec 2021 14:07:16: 67000000 INFO @ Sat, 11 Dec 2021 14:07:17: 67000000 INFO @ Sat, 11 Dec 2021 14:07:17: 57000000 INFO @ Sat, 11 Dec 2021 14:07:22: 68000000 INFO @ Sat, 11 Dec 2021 14:07:23: 68000000 INFO @ Sat, 11 Dec 2021 14:07:23: 58000000 INFO @ Sat, 11 Dec 2021 14:07:28: 69000000 INFO @ Sat, 11 Dec 2021 14:07:29: 69000000 INFO @ Sat, 11 Dec 2021 14:07:30: 59000000 INFO @ Sat, 11 Dec 2021 14:07:34: 70000000 INFO @ Sat, 11 Dec 2021 14:07:35: 70000000 INFO @ Sat, 11 Dec 2021 14:07:37: 60000000 INFO @ Sat, 11 Dec 2021 14:07:41: 71000000 INFO @ Sat, 11 Dec 2021 14:07:41: 71000000 INFO @ Sat, 11 Dec 2021 14:07:43: 61000000 INFO @ Sat, 11 Dec 2021 14:07:47: 72000000 INFO @ Sat, 11 Dec 2021 14:07:48: 72000000 INFO @ Sat, 11 Dec 2021 14:07:50: 62000000 INFO @ Sat, 11 Dec 2021 14:07:53: 73000000 INFO @ Sat, 11 Dec 2021 14:07:54: 73000000 INFO @ Sat, 11 Dec 2021 14:07:56: 63000000 INFO @ Sat, 11 Dec 2021 14:07:59: 74000000 INFO @ Sat, 11 Dec 2021 14:08:00: 74000000 INFO @ Sat, 11 Dec 2021 14:08:03: 64000000 INFO @ Sat, 11 Dec 2021 14:08:05: 75000000 INFO @ Sat, 11 Dec 2021 14:08:06: 75000000 INFO @ Sat, 11 Dec 2021 14:08:10: 65000000 INFO @ Sat, 11 Dec 2021 14:08:11: 76000000 INFO @ Sat, 11 Dec 2021 14:08:12: 76000000 INFO @ Sat, 11 Dec 2021 14:08:16: 66000000 INFO @ Sat, 11 Dec 2021 14:08:17: 77000000 INFO @ Sat, 11 Dec 2021 14:08:18: 77000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 14:08:23: 67000000 INFO @ Sat, 11 Dec 2021 14:08:23: 78000000 INFO @ Sat, 11 Dec 2021 14:08:24: 78000000 INFO @ Sat, 11 Dec 2021 14:08:29: 79000000 INFO @ Sat, 11 Dec 2021 14:08:29: 68000000 INFO @ Sat, 11 Dec 2021 14:08:30: 79000000 INFO @ Sat, 11 Dec 2021 14:08:35: 80000000 INFO @ Sat, 11 Dec 2021 14:08:36: 69000000 INFO @ Sat, 11 Dec 2021 14:08:36: 80000000 INFO @ Sat, 11 Dec 2021 14:08:42: 81000000 INFO @ Sat, 11 Dec 2021 14:08:42: 81000000 INFO @ Sat, 11 Dec 2021 14:08:42: 70000000 INFO @ Sat, 11 Dec 2021 14:08:48: 82000000 INFO @ Sat, 11 Dec 2021 14:08:49: 82000000 INFO @ Sat, 11 Dec 2021 14:08:49: 71000000 INFO @ Sat, 11 Dec 2021 14:08:54: 83000000 INFO @ Sat, 11 Dec 2021 14:08:55: 83000000 INFO @ Sat, 11 Dec 2021 14:08:55: 72000000 INFO @ Sat, 11 Dec 2021 14:08:57: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 14:08:57: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 14:08:57: #1 total tags in treatment: 38138053 INFO @ Sat, 11 Dec 2021 14:08:57: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:08:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:08:58: #1 tags after filtering in treatment: 34696476 INFO @ Sat, 11 Dec 2021 14:08:58: #1 Redundant rate of treatment: 0.09 INFO @ Sat, 11 Dec 2021 14:08:58: #1 finished! INFO @ Sat, 11 Dec 2021 14:08:58: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:08:58: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:08:58: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 14:08:58: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 14:08:58: #1 total tags in treatment: 38138053 INFO @ Sat, 11 Dec 2021 14:08:58: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:08:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:08:59: #1 tags after filtering in treatment: 34696476 INFO @ Sat, 11 Dec 2021 14:08:59: #1 Redundant rate of treatment: 0.09 INFO @ Sat, 11 Dec 2021 14:08:59: #1 finished! INFO @ Sat, 11 Dec 2021 14:08:59: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:08:59: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:09:00: #2 number of paired peaks: 107 WARNING @ Sat, 11 Dec 2021 14:09:00: Fewer paired peaks (107) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 107 pairs to build model! INFO @ Sat, 11 Dec 2021 14:09:00: start model_add_line... INFO @ Sat, 11 Dec 2021 14:09:00: start X-correlation... INFO @ Sat, 11 Dec 2021 14:09:00: end of X-cor INFO @ Sat, 11 Dec 2021 14:09:00: #2 finished! INFO @ Sat, 11 Dec 2021 14:09:00: #2 predicted fragment length is 1 bps INFO @ Sat, 11 Dec 2021 14:09:00: #2 alternative fragment length(s) may be 1,55,71,103,107,127,131,187,225,254,273,327,351,391,412,428,448,484,522,544,562 bps INFO @ Sat, 11 Dec 2021 14:09:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.05_model.r WARNING @ Sat, 11 Dec 2021 14:09:00: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 14:09:00: #2 You may need to consider one of the other alternative d(s): 1,55,71,103,107,127,131,187,225,254,273,327,351,391,412,428,448,484,522,544,562 WARNING @ Sat, 11 Dec 2021 14:09:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 14:09:00: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:09:00: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:09:01: #2 number of paired peaks: 107 WARNING @ Sat, 11 Dec 2021 14:09:01: Fewer paired peaks (107) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 107 pairs to build model! INFO @ Sat, 11 Dec 2021 14:09:01: start model_add_line... INFO @ Sat, 11 Dec 2021 14:09:01: start X-correlation... INFO @ Sat, 11 Dec 2021 14:09:01: end of X-cor INFO @ Sat, 11 Dec 2021 14:09:01: #2 finished! INFO @ Sat, 11 Dec 2021 14:09:01: #2 predicted fragment length is 1 bps INFO @ Sat, 11 Dec 2021 14:09:01: #2 alternative fragment length(s) may be 1,55,71,103,107,127,131,187,225,254,273,327,351,391,412,428,448,484,522,544,562 bps INFO @ Sat, 11 Dec 2021 14:09:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.10_model.r WARNING @ Sat, 11 Dec 2021 14:09:01: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 14:09:01: #2 You may need to consider one of the other alternative d(s): 1,55,71,103,107,127,131,187,225,254,273,327,351,391,412,428,448,484,522,544,562 WARNING @ Sat, 11 Dec 2021 14:09:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 14:09:01: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:09:01: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:09:01: 73000000 INFO @ Sat, 11 Dec 2021 14:09:07: 74000000 INFO @ Sat, 11 Dec 2021 14:09:13: 75000000 INFO @ Sat, 11 Dec 2021 14:09:20: 76000000 INFO @ Sat, 11 Dec 2021 14:09:26: 77000000 INFO @ Sat, 11 Dec 2021 14:09:32: 78000000 INFO @ Sat, 11 Dec 2021 14:09:37: 79000000 INFO @ Sat, 11 Dec 2021 14:09:43: 80000000 INFO @ Sat, 11 Dec 2021 14:09:49: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:09:49: 81000000 INFO @ Sat, 11 Dec 2021 14:09:52: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:09:55: 82000000 INFO @ Sat, 11 Dec 2021 14:10:01: 83000000 INFO @ Sat, 11 Dec 2021 14:10:04: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 14:10:04: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 14:10:04: #1 total tags in treatment: 38138053 INFO @ Sat, 11 Dec 2021 14:10:04: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 14:10:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 14:10:05: #1 tags after filtering in treatment: 34696476 INFO @ Sat, 11 Dec 2021 14:10:05: #1 Redundant rate of treatment: 0.09 INFO @ Sat, 11 Dec 2021 14:10:05: #1 finished! INFO @ Sat, 11 Dec 2021 14:10:05: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 14:10:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 14:10:07: #2 number of paired peaks: 107 WARNING @ Sat, 11 Dec 2021 14:10:07: Fewer paired peaks (107) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 107 pairs to build model! INFO @ Sat, 11 Dec 2021 14:10:07: start model_add_line... INFO @ Sat, 11 Dec 2021 14:10:07: start X-correlation... INFO @ Sat, 11 Dec 2021 14:10:07: end of X-cor INFO @ Sat, 11 Dec 2021 14:10:07: #2 finished! INFO @ Sat, 11 Dec 2021 14:10:07: #2 predicted fragment length is 1 bps INFO @ Sat, 11 Dec 2021 14:10:07: #2 alternative fragment length(s) may be 1,55,71,103,107,127,131,187,225,254,273,327,351,391,412,428,448,484,522,544,562 bps INFO @ Sat, 11 Dec 2021 14:10:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.20_model.r WARNING @ Sat, 11 Dec 2021 14:10:07: #2 Since the d (1) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 14:10:07: #2 You may need to consider one of the other alternative d(s): 1,55,71,103,107,127,131,187,225,254,273,327,351,391,412,428,448,484,522,544,562 WARNING @ Sat, 11 Dec 2021 14:10:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 14:10:07: #3 Call peaks... INFO @ Sat, 11 Dec 2021 14:10:07: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 14:10:12: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.05_peaks.xls INFO @ Sat, 11 Dec 2021 14:10:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:10:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.05_summits.bed INFO @ Sat, 11 Dec 2021 14:10:12: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 14:10:14: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.10_peaks.xls INFO @ Sat, 11 Dec 2021 14:10:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:10:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.10_summits.bed INFO @ Sat, 11 Dec 2021 14:10:14: Done! pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 14:10:56: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 14:11:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.20_peaks.xls INFO @ Sat, 11 Dec 2021 14:11:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 14:11:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9008827/SRX9008827.20_summits.bed INFO @ Sat, 11 Dec 2021 14:11:19: Done! pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling