Job ID = 14172498 SRX = SRX8755937 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 26828319 spots for SRR12248074/SRR12248074.sra Written 26828319 spots for SRR12248074/SRR12248074.sra fastq に変換しました。 bowtie でマッピング中... Your job 14173054 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:33:23 26828319 reads; of these: 26828319 (100.00%) were paired; of these: 7523813 (28.04%) aligned concordantly 0 times 16975374 (63.27%) aligned concordantly exactly 1 time 2329132 (8.68%) aligned concordantly >1 times ---- 7523813 pairs aligned concordantly 0 times; of these: 2860745 (38.02%) aligned discordantly 1 time ---- 4663068 pairs aligned 0 times concordantly or discordantly; of these: 9326136 mates make up the pairs; of these: 7478267 (80.19%) aligned 0 times 1088381 (11.67%) aligned exactly 1 time 759488 (8.14%) aligned >1 times 86.06% overall alignment rate Time searching: 00:33:23 Overall time: 00:33:23 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2202397 / 21825761 = 0.1009 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:34:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:34:48: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:34:48: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:34:55: 1000000 INFO @ Sat, 11 Dec 2021 16:35:01: 2000000 INFO @ Sat, 11 Dec 2021 16:35:08: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:35:14: 4000000 INFO @ Sat, 11 Dec 2021 16:35:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:35:17: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:35:17: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:35:21: 5000000 INFO @ Sat, 11 Dec 2021 16:35:25: 1000000 INFO @ Sat, 11 Dec 2021 16:35:28: 6000000 INFO @ Sat, 11 Dec 2021 16:35:32: 2000000 INFO @ Sat, 11 Dec 2021 16:35:35: 7000000 INFO @ Sat, 11 Dec 2021 16:35:40: 3000000 INFO @ Sat, 11 Dec 2021 16:35:42: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:35:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:35:47: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:35:47: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:35:47: 4000000 INFO @ Sat, 11 Dec 2021 16:35:48: 9000000 INFO @ Sat, 11 Dec 2021 16:35:54: 1000000 INFO @ Sat, 11 Dec 2021 16:35:55: 5000000 INFO @ Sat, 11 Dec 2021 16:35:55: 10000000 INFO @ Sat, 11 Dec 2021 16:36:02: 2000000 INFO @ Sat, 11 Dec 2021 16:36:02: 11000000 INFO @ Sat, 11 Dec 2021 16:36:03: 6000000 INFO @ Sat, 11 Dec 2021 16:36:09: 12000000 INFO @ Sat, 11 Dec 2021 16:36:09: 3000000 INFO @ Sat, 11 Dec 2021 16:36:11: 7000000 INFO @ Sat, 11 Dec 2021 16:36:16: 13000000 INFO @ Sat, 11 Dec 2021 16:36:17: 4000000 INFO @ Sat, 11 Dec 2021 16:36:18: 8000000 INFO @ Sat, 11 Dec 2021 16:36:23: 14000000 INFO @ Sat, 11 Dec 2021 16:36:25: 5000000 INFO @ Sat, 11 Dec 2021 16:36:26: 9000000 INFO @ Sat, 11 Dec 2021 16:36:30: 15000000 INFO @ Sat, 11 Dec 2021 16:36:32: 6000000 INFO @ Sat, 11 Dec 2021 16:36:33: 10000000 INFO @ Sat, 11 Dec 2021 16:36:37: 16000000 INFO @ Sat, 11 Dec 2021 16:36:40: 7000000 INFO @ Sat, 11 Dec 2021 16:36:41: 11000000 INFO @ Sat, 11 Dec 2021 16:36:43: 17000000 INFO @ Sat, 11 Dec 2021 16:36:48: 8000000 INFO @ Sat, 11 Dec 2021 16:36:49: 12000000 INFO @ Sat, 11 Dec 2021 16:36:50: 18000000 INFO @ Sat, 11 Dec 2021 16:36:55: 9000000 INFO @ Sat, 11 Dec 2021 16:36:57: 13000000 INFO @ Sat, 11 Dec 2021 16:36:57: 19000000 INFO @ Sat, 11 Dec 2021 16:37:03: 10000000 INFO @ Sat, 11 Dec 2021 16:37:04: 20000000 INFO @ Sat, 11 Dec 2021 16:37:04: 14000000 INFO @ Sat, 11 Dec 2021 16:37:11: 11000000 INFO @ Sat, 11 Dec 2021 16:37:11: 21000000 INFO @ Sat, 11 Dec 2021 16:37:12: 15000000 INFO @ Sat, 11 Dec 2021 16:37:18: 22000000 INFO @ Sat, 11 Dec 2021 16:37:18: 12000000 INFO @ Sat, 11 Dec 2021 16:37:20: 16000000 INFO @ Sat, 11 Dec 2021 16:37:25: 23000000 INFO @ Sat, 11 Dec 2021 16:37:26: 13000000 INFO @ Sat, 11 Dec 2021 16:37:28: 17000000 INFO @ Sat, 11 Dec 2021 16:37:32: 24000000 INFO @ Sat, 11 Dec 2021 16:37:34: 14000000 INFO @ Sat, 11 Dec 2021 16:37:36: 18000000 INFO @ Sat, 11 Dec 2021 16:37:39: 25000000 INFO @ Sat, 11 Dec 2021 16:37:41: 15000000 INFO @ Sat, 11 Dec 2021 16:37:44: 19000000 INFO @ Sat, 11 Dec 2021 16:37:46: 26000000 INFO @ Sat, 11 Dec 2021 16:37:49: 16000000 INFO @ Sat, 11 Dec 2021 16:37:52: 20000000 INFO @ Sat, 11 Dec 2021 16:37:53: 27000000 INFO @ Sat, 11 Dec 2021 16:37:57: 17000000 INFO @ Sat, 11 Dec 2021 16:37:59: 21000000 INFO @ Sat, 11 Dec 2021 16:38:00: 28000000 INFO @ Sat, 11 Dec 2021 16:38:04: 18000000 INFO @ Sat, 11 Dec 2021 16:38:07: 29000000 INFO @ Sat, 11 Dec 2021 16:38:07: 22000000 INFO @ Sat, 11 Dec 2021 16:38:12: 19000000 INFO @ Sat, 11 Dec 2021 16:38:14: 30000000 INFO @ Sat, 11 Dec 2021 16:38:15: 23000000 INFO @ Sat, 11 Dec 2021 16:38:20: 20000000 INFO @ Sat, 11 Dec 2021 16:38:21: 31000000 INFO @ Sat, 11 Dec 2021 16:38:23: 24000000 INFO @ Sat, 11 Dec 2021 16:38:27: 21000000 INFO @ Sat, 11 Dec 2021 16:38:28: 32000000 INFO @ Sat, 11 Dec 2021 16:38:30: 25000000 INFO @ Sat, 11 Dec 2021 16:38:35: 33000000 INFO @ Sat, 11 Dec 2021 16:38:35: 22000000 INFO @ Sat, 11 Dec 2021 16:38:38: 26000000 INFO @ Sat, 11 Dec 2021 16:38:41: 34000000 INFO @ Sat, 11 Dec 2021 16:38:42: 23000000 INFO @ Sat, 11 Dec 2021 16:38:46: 27000000 INFO @ Sat, 11 Dec 2021 16:38:48: 35000000 INFO @ Sat, 11 Dec 2021 16:38:50: 24000000 INFO @ Sat, 11 Dec 2021 16:38:54: 28000000 INFO @ Sat, 11 Dec 2021 16:38:55: 36000000 INFO @ Sat, 11 Dec 2021 16:38:57: 25000000 INFO @ Sat, 11 Dec 2021 16:39:01: 29000000 INFO @ Sat, 11 Dec 2021 16:39:02: 37000000 INFO @ Sat, 11 Dec 2021 16:39:05: 26000000 INFO @ Sat, 11 Dec 2021 16:39:09: 38000000 INFO @ Sat, 11 Dec 2021 16:39:09: 30000000 INFO @ Sat, 11 Dec 2021 16:39:13: 27000000 INFO @ Sat, 11 Dec 2021 16:39:16: 39000000 INFO @ Sat, 11 Dec 2021 16:39:17: 31000000 INFO @ Sat, 11 Dec 2021 16:39:20: 28000000 INFO @ Sat, 11 Dec 2021 16:39:23: 40000000 INFO @ Sat, 11 Dec 2021 16:39:25: 32000000 INFO @ Sat, 11 Dec 2021 16:39:28: 29000000 INFO @ Sat, 11 Dec 2021 16:39:30: 41000000 INFO @ Sat, 11 Dec 2021 16:39:33: 33000000 INFO @ Sat, 11 Dec 2021 16:39:35: #1 tag size is determined as 51 bps INFO @ Sat, 11 Dec 2021 16:39:35: #1 tag size = 51 INFO @ Sat, 11 Dec 2021 16:39:35: #1 total tags in treatment: 17499143 INFO @ Sat, 11 Dec 2021 16:39:35: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:39:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:39:36: 30000000 INFO @ Sat, 11 Dec 2021 16:39:36: #1 tags after filtering in treatment: 12320322 INFO @ Sat, 11 Dec 2021 16:39:36: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 16:39:36: #1 finished! INFO @ Sat, 11 Dec 2021 16:39:36: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:39:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:39:37: #2 number of paired peaks: 1467 INFO @ Sat, 11 Dec 2021 16:39:37: start model_add_line... INFO @ Sat, 11 Dec 2021 16:39:37: start X-correlation... INFO @ Sat, 11 Dec 2021 16:39:37: end of X-cor INFO @ Sat, 11 Dec 2021 16:39:37: #2 finished! INFO @ Sat, 11 Dec 2021 16:39:37: #2 predicted fragment length is 62 bps INFO @ Sat, 11 Dec 2021 16:39:37: #2 alternative fragment length(s) may be 62 bps INFO @ Sat, 11 Dec 2021 16:39:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.05_model.r WARNING @ Sat, 11 Dec 2021 16:39:37: #2 Since the d (62) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:39:37: #2 You may need to consider one of the other alternative d(s): 62 WARNING @ Sat, 11 Dec 2021 16:39:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:39:37: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:39:37: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:39:40: 34000000 INFO @ Sat, 11 Dec 2021 16:39:43: 31000000 INFO @ Sat, 11 Dec 2021 16:39:48: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 16:39:51: 32000000 INFO @ Sat, 11 Dec 2021 16:39:56: 36000000 INFO @ Sat, 11 Dec 2021 16:39:58: 33000000 INFO @ Sat, 11 Dec 2021 16:40:04: 37000000 INFO @ Sat, 11 Dec 2021 16:40:06: 34000000 INFO @ Sat, 11 Dec 2021 16:40:12: 38000000 INFO @ Sat, 11 Dec 2021 16:40:12: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 16:40:14: 35000000 INFO @ Sat, 11 Dec 2021 16:40:19: 39000000 INFO @ Sat, 11 Dec 2021 16:40:22: 36000000 INFO @ Sat, 11 Dec 2021 16:40:27: 40000000 INFO @ Sat, 11 Dec 2021 16:40:29: 37000000 INFO @ Sat, 11 Dec 2021 16:40:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.05_peaks.xls INFO @ Sat, 11 Dec 2021 16:40:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 16:40:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.05_summits.bed INFO @ Sat, 11 Dec 2021 16:40:31: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (18570 records, 4 fields): 29 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 16:40:34: 41000000 INFO @ Sat, 11 Dec 2021 16:40:37: 38000000 INFO @ Sat, 11 Dec 2021 16:40:41: #1 tag size is determined as 51 bps INFO @ Sat, 11 Dec 2021 16:40:41: #1 tag size = 51 INFO @ Sat, 11 Dec 2021 16:40:41: #1 total tags in treatment: 17499143 INFO @ Sat, 11 Dec 2021 16:40:41: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:40:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:40:41: #1 tags after filtering in treatment: 12320322 INFO @ Sat, 11 Dec 2021 16:40:41: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 16:40:41: #1 finished! INFO @ Sat, 11 Dec 2021 16:40:41: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:40:41: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:40:42: #2 number of paired peaks: 1467 INFO @ Sat, 11 Dec 2021 16:40:42: start model_add_line... INFO @ Sat, 11 Dec 2021 16:40:42: start X-correlation... INFO @ Sat, 11 Dec 2021 16:40:42: end of X-cor INFO @ Sat, 11 Dec 2021 16:40:42: #2 finished! INFO @ Sat, 11 Dec 2021 16:40:42: #2 predicted fragment length is 62 bps INFO @ Sat, 11 Dec 2021 16:40:42: #2 alternative fragment length(s) may be 62 bps INFO @ Sat, 11 Dec 2021 16:40:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.10_model.r WARNING @ Sat, 11 Dec 2021 16:40:42: #2 Since the d (62) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:40:42: #2 You may need to consider one of the other alternative d(s): 62 WARNING @ Sat, 11 Dec 2021 16:40:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:40:42: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:40:42: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:40:44: 39000000 INFO @ Sat, 11 Dec 2021 16:40:52: 40000000 INFO @ Sat, 11 Dec 2021 16:40:59: 41000000 INFO @ Sat, 11 Dec 2021 16:41:05: #1 tag size is determined as 51 bps INFO @ Sat, 11 Dec 2021 16:41:05: #1 tag size = 51 INFO @ Sat, 11 Dec 2021 16:41:05: #1 total tags in treatment: 17499143 INFO @ Sat, 11 Dec 2021 16:41:05: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:41:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:41:05: #1 tags after filtering in treatment: 12320322 INFO @ Sat, 11 Dec 2021 16:41:05: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 16:41:05: #1 finished! INFO @ Sat, 11 Dec 2021 16:41:05: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:41:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:41:07: #2 number of paired peaks: 1467 INFO @ Sat, 11 Dec 2021 16:41:07: start model_add_line... INFO @ Sat, 11 Dec 2021 16:41:07: start X-correlation... INFO @ Sat, 11 Dec 2021 16:41:07: end of X-cor INFO @ Sat, 11 Dec 2021 16:41:07: #2 finished! INFO @ Sat, 11 Dec 2021 16:41:07: #2 predicted fragment length is 62 bps INFO @ Sat, 11 Dec 2021 16:41:07: #2 alternative fragment length(s) may be 62 bps INFO @ Sat, 11 Dec 2021 16:41:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.20_model.r WARNING @ Sat, 11 Dec 2021 16:41:07: #2 Since the d (62) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:41:07: #2 You may need to consider one of the other alternative d(s): 62 WARNING @ Sat, 11 Dec 2021 16:41:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:41:07: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:41:07: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 16:41:17: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 16:41:34: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.10_peaks.xls INFO @ Sat, 11 Dec 2021 16:41:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 16:41:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.10_summits.bed INFO @ Sat, 11 Dec 2021 16:41:34: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (9424 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 16:41:42: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 16:41:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.20_peaks.xls INFO @ Sat, 11 Dec 2021 16:41:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 16:41:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755937/SRX8755937.20_summits.bed INFO @ Sat, 11 Dec 2021 16:41:59: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (1785 records, 4 fields): 7 millis CompletedMACS2peakCalling