Job ID = 14172493 SRX = SRX8755935 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 29769393 spots for SRR12248072/SRR12248072.sra Written 29769393 spots for SRR12248072/SRR12248072.sra fastq に変換しました。 bowtie でマッピング中... Your job 14173094 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:48:15 29769393 reads; of these: 29769393 (100.00%) were paired; of these: 8896447 (29.88%) aligned concordantly 0 times 17567135 (59.01%) aligned concordantly exactly 1 time 3305811 (11.10%) aligned concordantly >1 times ---- 8896447 pairs aligned concordantly 0 times; of these: 3256754 (36.61%) aligned discordantly 1 time ---- 5639693 pairs aligned 0 times concordantly or discordantly; of these: 11279386 mates make up the pairs; of these: 8721900 (77.33%) aligned 0 times 1206014 (10.69%) aligned exactly 1 time 1351472 (11.98%) aligned >1 times 85.35% overall alignment rate Time searching: 00:48:15 Overall time: 00:48:15 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2024394 / 23721205 = 0.0853 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:51:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:51:03: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:51:03: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:51:11: 1000000 INFO @ Sat, 11 Dec 2021 16:51:20: 2000000 INFO @ Sat, 11 Dec 2021 16:51:28: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:51:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:51:33: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:51:33: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:51:38: 4000000 INFO @ Sat, 11 Dec 2021 16:51:42: 1000000 INFO @ Sat, 11 Dec 2021 16:51:47: 5000000 INFO @ Sat, 11 Dec 2021 16:51:51: 2000000 INFO @ Sat, 11 Dec 2021 16:51:56: 6000000 INFO @ Sat, 11 Dec 2021 16:52:00: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 16:52:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 16:52:03: #1 read tag files... INFO @ Sat, 11 Dec 2021 16:52:03: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 16:52:05: 7000000 INFO @ Sat, 11 Dec 2021 16:52:09: 4000000 INFO @ Sat, 11 Dec 2021 16:52:12: 1000000 INFO @ Sat, 11 Dec 2021 16:52:14: 8000000 INFO @ Sat, 11 Dec 2021 16:52:18: 5000000 INFO @ Sat, 11 Dec 2021 16:52:22: 2000000 INFO @ Sat, 11 Dec 2021 16:52:23: 9000000 INFO @ Sat, 11 Dec 2021 16:52:27: 6000000 INFO @ Sat, 11 Dec 2021 16:52:32: 3000000 INFO @ Sat, 11 Dec 2021 16:52:32: 10000000 INFO @ Sat, 11 Dec 2021 16:52:36: 7000000 INFO @ Sat, 11 Dec 2021 16:52:41: 4000000 INFO @ Sat, 11 Dec 2021 16:52:42: 11000000 INFO @ Sat, 11 Dec 2021 16:52:46: 8000000 INFO @ Sat, 11 Dec 2021 16:52:51: 5000000 INFO @ Sat, 11 Dec 2021 16:52:52: 12000000 INFO @ Sat, 11 Dec 2021 16:52:55: 9000000 INFO @ Sat, 11 Dec 2021 16:53:01: 6000000 INFO @ Sat, 11 Dec 2021 16:53:01: 13000000 INFO @ Sat, 11 Dec 2021 16:53:04: 10000000 INFO @ Sat, 11 Dec 2021 16:53:10: 7000000 INFO @ Sat, 11 Dec 2021 16:53:10: 14000000 INFO @ Sat, 11 Dec 2021 16:53:13: 11000000 INFO @ Sat, 11 Dec 2021 16:53:19: 15000000 INFO @ Sat, 11 Dec 2021 16:53:20: 8000000 INFO @ Sat, 11 Dec 2021 16:53:22: 12000000 INFO @ Sat, 11 Dec 2021 16:53:28: 16000000 INFO @ Sat, 11 Dec 2021 16:53:30: 9000000 INFO @ Sat, 11 Dec 2021 16:53:31: 13000000 INFO @ Sat, 11 Dec 2021 16:53:37: 17000000 INFO @ Sat, 11 Dec 2021 16:53:39: 10000000 INFO @ Sat, 11 Dec 2021 16:53:40: 14000000 INFO @ Sat, 11 Dec 2021 16:53:46: 18000000 INFO @ Sat, 11 Dec 2021 16:53:49: 11000000 INFO @ Sat, 11 Dec 2021 16:53:49: 15000000 INFO @ Sat, 11 Dec 2021 16:53:56: 19000000 INFO @ Sat, 11 Dec 2021 16:53:58: 16000000 INFO @ Sat, 11 Dec 2021 16:53:58: 12000000 INFO @ Sat, 11 Dec 2021 16:54:05: 20000000 INFO @ Sat, 11 Dec 2021 16:54:08: 17000000 INFO @ Sat, 11 Dec 2021 16:54:08: 13000000 INFO @ Sat, 11 Dec 2021 16:54:15: 21000000 INFO @ Sat, 11 Dec 2021 16:54:17: 18000000 INFO @ Sat, 11 Dec 2021 16:54:18: 14000000 INFO @ Sat, 11 Dec 2021 16:54:25: 22000000 INFO @ Sat, 11 Dec 2021 16:54:27: 19000000 INFO @ Sat, 11 Dec 2021 16:54:28: 15000000 INFO @ Sat, 11 Dec 2021 16:54:34: 23000000 INFO @ Sat, 11 Dec 2021 16:54:37: 20000000 INFO @ Sat, 11 Dec 2021 16:54:37: 16000000 INFO @ Sat, 11 Dec 2021 16:54:44: 24000000 INFO @ Sat, 11 Dec 2021 16:54:46: 21000000 INFO @ Sat, 11 Dec 2021 16:54:47: 17000000 INFO @ Sat, 11 Dec 2021 16:54:54: 25000000 INFO @ Sat, 11 Dec 2021 16:54:56: 22000000 INFO @ Sat, 11 Dec 2021 16:54:57: 18000000 INFO @ Sat, 11 Dec 2021 16:55:04: 26000000 INFO @ Sat, 11 Dec 2021 16:55:06: 23000000 INFO @ Sat, 11 Dec 2021 16:55:06: 19000000 INFO @ Sat, 11 Dec 2021 16:55:13: 27000000 INFO @ Sat, 11 Dec 2021 16:55:16: 24000000 INFO @ Sat, 11 Dec 2021 16:55:16: 20000000 INFO @ Sat, 11 Dec 2021 16:55:23: 28000000 INFO @ Sat, 11 Dec 2021 16:55:25: 25000000 INFO @ Sat, 11 Dec 2021 16:55:26: 21000000 INFO @ Sat, 11 Dec 2021 16:55:34: 29000000 INFO @ Sat, 11 Dec 2021 16:55:35: 26000000 INFO @ Sat, 11 Dec 2021 16:55:35: 22000000 INFO @ Sat, 11 Dec 2021 16:55:44: 30000000 INFO @ Sat, 11 Dec 2021 16:55:45: 27000000 INFO @ Sat, 11 Dec 2021 16:55:45: 23000000 INFO @ Sat, 11 Dec 2021 16:55:53: 31000000 INFO @ Sat, 11 Dec 2021 16:55:55: 24000000 INFO @ Sat, 11 Dec 2021 16:55:56: 28000000 INFO @ Sat, 11 Dec 2021 16:56:03: 32000000 INFO @ Sat, 11 Dec 2021 16:56:05: 25000000 INFO @ Sat, 11 Dec 2021 16:56:06: 29000000 INFO @ Sat, 11 Dec 2021 16:56:12: 33000000 INFO @ Sat, 11 Dec 2021 16:56:14: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 16:56:15: 30000000 INFO @ Sat, 11 Dec 2021 16:56:22: 34000000 INFO @ Sat, 11 Dec 2021 16:56:24: 27000000 INFO @ Sat, 11 Dec 2021 16:56:25: 31000000 INFO @ Sat, 11 Dec 2021 16:56:32: 35000000 INFO @ Sat, 11 Dec 2021 16:56:34: 28000000 INFO @ Sat, 11 Dec 2021 16:56:34: 32000000 INFO @ Sat, 11 Dec 2021 16:56:42: 36000000 INFO @ Sat, 11 Dec 2021 16:56:43: 29000000 INFO @ Sat, 11 Dec 2021 16:56:44: 33000000 INFO @ Sat, 11 Dec 2021 16:56:51: 37000000 INFO @ Sat, 11 Dec 2021 16:56:53: 30000000 INFO @ Sat, 11 Dec 2021 16:56:54: 34000000 INFO @ Sat, 11 Dec 2021 16:57:01: 38000000 INFO @ Sat, 11 Dec 2021 16:57:03: 31000000 INFO @ Sat, 11 Dec 2021 16:57:04: 35000000 INFO @ Sat, 11 Dec 2021 16:57:10: 39000000 INFO @ Sat, 11 Dec 2021 16:57:13: 32000000 INFO @ Sat, 11 Dec 2021 16:57:15: 36000000 INFO @ Sat, 11 Dec 2021 16:57:20: 40000000 INFO @ Sat, 11 Dec 2021 16:57:23: 33000000 INFO @ Sat, 11 Dec 2021 16:57:25: 37000000 INFO @ Sat, 11 Dec 2021 16:57:30: 41000000 INFO @ Sat, 11 Dec 2021 16:57:35: 34000000 INFO @ Sat, 11 Dec 2021 16:57:35: 38000000 INFO @ Sat, 11 Dec 2021 16:57:39: 42000000 INFO @ Sat, 11 Dec 2021 16:57:45: 39000000 INFO @ Sat, 11 Dec 2021 16:57:45: 35000000 INFO @ Sat, 11 Dec 2021 16:57:49: 43000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 16:57:54: 40000000 INFO @ Sat, 11 Dec 2021 16:57:55: 36000000 INFO @ Sat, 11 Dec 2021 16:57:58: 44000000 INFO @ Sat, 11 Dec 2021 16:58:05: 37000000 INFO @ Sat, 11 Dec 2021 16:58:06: 41000000 INFO @ Sat, 11 Dec 2021 16:58:08: 45000000 INFO @ Sat, 11 Dec 2021 16:58:15: 38000000 INFO @ Sat, 11 Dec 2021 16:58:15: 42000000 INFO @ Sat, 11 Dec 2021 16:58:17: 46000000 INFO @ Sat, 11 Dec 2021 16:58:24: 39000000 INFO @ Sat, 11 Dec 2021 16:58:24: #1 tag size is determined as 51 bps INFO @ Sat, 11 Dec 2021 16:58:24: #1 tag size = 51 INFO @ Sat, 11 Dec 2021 16:58:24: #1 total tags in treatment: 19210626 INFO @ Sat, 11 Dec 2021 16:58:24: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:58:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:58:25: #1 tags after filtering in treatment: 14260452 INFO @ Sat, 11 Dec 2021 16:58:25: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 16:58:25: #1 finished! INFO @ Sat, 11 Dec 2021 16:58:25: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:58:25: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:58:25: 43000000 INFO @ Sat, 11 Dec 2021 16:58:26: #2 number of paired peaks: 406 WARNING @ Sat, 11 Dec 2021 16:58:26: Fewer paired peaks (406) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 406 pairs to build model! INFO @ Sat, 11 Dec 2021 16:58:26: start model_add_line... INFO @ Sat, 11 Dec 2021 16:58:26: start X-correlation... INFO @ Sat, 11 Dec 2021 16:58:26: end of X-cor INFO @ Sat, 11 Dec 2021 16:58:26: #2 finished! INFO @ Sat, 11 Dec 2021 16:58:26: #2 predicted fragment length is 56 bps INFO @ Sat, 11 Dec 2021 16:58:26: #2 alternative fragment length(s) may be 56 bps INFO @ Sat, 11 Dec 2021 16:58:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.05_model.r WARNING @ Sat, 11 Dec 2021 16:58:26: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:58:26: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Sat, 11 Dec 2021 16:58:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:58:26: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:58:26: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:58:34: 40000000 INFO @ Sat, 11 Dec 2021 16:58:34: 44000000 INFO @ Sat, 11 Dec 2021 16:58:43: 41000000 INFO @ Sat, 11 Dec 2021 16:58:43: 45000000 INFO @ Sat, 11 Dec 2021 16:58:52: 46000000 INFO @ Sat, 11 Dec 2021 16:58:53: 42000000 INFO @ Sat, 11 Dec 2021 16:58:59: #1 tag size is determined as 51 bps INFO @ Sat, 11 Dec 2021 16:58:59: #1 tag size = 51 INFO @ Sat, 11 Dec 2021 16:58:59: #1 total tags in treatment: 19210626 INFO @ Sat, 11 Dec 2021 16:58:59: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:58:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:59:00: #1 tags after filtering in treatment: 14260452 INFO @ Sat, 11 Dec 2021 16:59:00: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 16:59:00: #1 finished! INFO @ Sat, 11 Dec 2021 16:59:00: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:59:00: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:59:01: #2 number of paired peaks: 406 WARNING @ Sat, 11 Dec 2021 16:59:01: Fewer paired peaks (406) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 406 pairs to build model! INFO @ Sat, 11 Dec 2021 16:59:01: start model_add_line... INFO @ Sat, 11 Dec 2021 16:59:01: start X-correlation... INFO @ Sat, 11 Dec 2021 16:59:01: end of X-cor INFO @ Sat, 11 Dec 2021 16:59:01: #2 finished! INFO @ Sat, 11 Dec 2021 16:59:01: #2 predicted fragment length is 56 bps INFO @ Sat, 11 Dec 2021 16:59:01: #2 alternative fragment length(s) may be 56 bps INFO @ Sat, 11 Dec 2021 16:59:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.10_model.r WARNING @ Sat, 11 Dec 2021 16:59:01: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:59:01: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Sat, 11 Dec 2021 16:59:01: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:59:01: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:59:01: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:59:02: 43000000 INFO @ Sat, 11 Dec 2021 16:59:09: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 16:59:11: 44000000 INFO @ Sat, 11 Dec 2021 16:59:21: 45000000 INFO @ Sat, 11 Dec 2021 16:59:30: 46000000 INFO @ Sat, 11 Dec 2021 16:59:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.05_peaks.xls INFO @ Sat, 11 Dec 2021 16:59:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 16:59:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.05_summits.bed INFO @ Sat, 11 Dec 2021 16:59:30: Done! pass1 - making usageList (15 chroms): 6 millis pass2 - checking and writing primary data (15057 records, 4 fields): 45 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 16:59:37: #1 tag size is determined as 51 bps INFO @ Sat, 11 Dec 2021 16:59:37: #1 tag size = 51 INFO @ Sat, 11 Dec 2021 16:59:37: #1 total tags in treatment: 19210626 INFO @ Sat, 11 Dec 2021 16:59:37: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 16:59:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 16:59:37: #1 tags after filtering in treatment: 14260452 INFO @ Sat, 11 Dec 2021 16:59:37: #1 Redundant rate of treatment: 0.26 INFO @ Sat, 11 Dec 2021 16:59:37: #1 finished! INFO @ Sat, 11 Dec 2021 16:59:37: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 16:59:37: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 16:59:39: #2 number of paired peaks: 406 WARNING @ Sat, 11 Dec 2021 16:59:39: Fewer paired peaks (406) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 406 pairs to build model! INFO @ Sat, 11 Dec 2021 16:59:39: start model_add_line... INFO @ Sat, 11 Dec 2021 16:59:39: start X-correlation... INFO @ Sat, 11 Dec 2021 16:59:39: end of X-cor INFO @ Sat, 11 Dec 2021 16:59:39: #2 finished! INFO @ Sat, 11 Dec 2021 16:59:39: #2 predicted fragment length is 56 bps INFO @ Sat, 11 Dec 2021 16:59:39: #2 alternative fragment length(s) may be 56 bps INFO @ Sat, 11 Dec 2021 16:59:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.20_model.r WARNING @ Sat, 11 Dec 2021 16:59:39: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 16:59:39: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Sat, 11 Dec 2021 16:59:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 16:59:39: #3 Call peaks... INFO @ Sat, 11 Dec 2021 16:59:39: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 16:59:41: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 17:00:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.10_peaks.xls INFO @ Sat, 11 Dec 2021 17:00:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 17:00:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.10_summits.bed INFO @ Sat, 11 Dec 2021 17:00:02: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (6408 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 17:00:19: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 17:00:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.20_peaks.xls INFO @ Sat, 11 Dec 2021 17:00:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 17:00:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755935/SRX8755935.20_summits.bed INFO @ Sat, 11 Dec 2021 17:00:39: Done! pass1 - making usageList (12 chroms): 2 millis pass2 - checking and writing primary data (600 records, 4 fields): 2 millis CompletedMACS2peakCalling