Job ID = 14172458 SRX = SRX8694703 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 34453928 spots for SRR12180105/SRR12180105.sra Written 34453928 spots for SRR12180105/SRR12180105.sra fastq に変換しました。 bowtie でマッピング中... Your job 14173321 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:51:59 34453928 reads; of these: 34453928 (100.00%) were paired; of these: 9900684 (28.74%) aligned concordantly 0 times 17322929 (50.28%) aligned concordantly exactly 1 time 7230315 (20.99%) aligned concordantly >1 times ---- 9900684 pairs aligned concordantly 0 times; of these: 1811180 (18.29%) aligned discordantly 1 time ---- 8089504 pairs aligned 0 times concordantly or discordantly; of these: 16179008 mates make up the pairs; of these: 12848832 (79.42%) aligned 0 times 1179796 (7.29%) aligned exactly 1 time 2150380 (13.29%) aligned >1 times 81.35% overall alignment rate Time searching: 01:51:59 Overall time: 01:51:59 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4597865 / 26185539 = 0.1756 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 17:46:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 17:46:23: #1 read tag files... INFO @ Sat, 11 Dec 2021 17:46:23: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 17:46:32: 1000000 INFO @ Sat, 11 Dec 2021 17:46:40: 2000000 INFO @ Sat, 11 Dec 2021 17:46:49: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 17:46:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 17:46:53: #1 read tag files... INFO @ Sat, 11 Dec 2021 17:46:53: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 17:46:58: 4000000 INFO @ Sat, 11 Dec 2021 17:47:01: 1000000 INFO @ Sat, 11 Dec 2021 17:47:07: 5000000 INFO @ Sat, 11 Dec 2021 17:47:09: 2000000 INFO @ Sat, 11 Dec 2021 17:47:16: 6000000 INFO @ Sat, 11 Dec 2021 17:47:17: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 17:47:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 17:47:23: #1 read tag files... INFO @ Sat, 11 Dec 2021 17:47:23: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 17:47:25: 4000000 INFO @ Sat, 11 Dec 2021 17:47:25: 7000000 INFO @ Sat, 11 Dec 2021 17:47:31: 1000000 INFO @ Sat, 11 Dec 2021 17:47:33: 5000000 INFO @ Sat, 11 Dec 2021 17:47:34: 8000000 INFO @ Sat, 11 Dec 2021 17:47:39: 2000000 INFO @ Sat, 11 Dec 2021 17:47:41: 6000000 INFO @ Sat, 11 Dec 2021 17:47:44: 9000000 INFO @ Sat, 11 Dec 2021 17:47:47: 3000000 INFO @ Sat, 11 Dec 2021 17:47:49: 7000000 INFO @ Sat, 11 Dec 2021 17:47:53: 10000000 INFO @ Sat, 11 Dec 2021 17:47:55: 4000000 INFO @ Sat, 11 Dec 2021 17:47:57: 8000000 INFO @ Sat, 11 Dec 2021 17:48:02: 11000000 INFO @ Sat, 11 Dec 2021 17:48:04: 5000000 INFO @ Sat, 11 Dec 2021 17:48:05: 9000000 INFO @ Sat, 11 Dec 2021 17:48:11: 12000000 INFO @ Sat, 11 Dec 2021 17:48:12: 6000000 INFO @ Sat, 11 Dec 2021 17:48:13: 10000000 INFO @ Sat, 11 Dec 2021 17:48:20: 7000000 INFO @ Sat, 11 Dec 2021 17:48:20: 13000000 INFO @ Sat, 11 Dec 2021 17:48:21: 11000000 INFO @ Sat, 11 Dec 2021 17:48:27: 8000000 INFO @ Sat, 11 Dec 2021 17:48:29: 12000000 INFO @ Sat, 11 Dec 2021 17:48:29: 14000000 INFO @ Sat, 11 Dec 2021 17:48:35: 9000000 INFO @ Sat, 11 Dec 2021 17:48:37: 13000000 INFO @ Sat, 11 Dec 2021 17:48:38: 15000000 INFO @ Sat, 11 Dec 2021 17:48:43: 10000000 INFO @ Sat, 11 Dec 2021 17:48:45: 14000000 INFO @ Sat, 11 Dec 2021 17:48:48: 16000000 INFO @ Sat, 11 Dec 2021 17:48:51: 11000000 INFO @ Sat, 11 Dec 2021 17:48:53: 15000000 INFO @ Sat, 11 Dec 2021 17:48:57: 17000000 INFO @ Sat, 11 Dec 2021 17:48:59: 12000000 INFO @ Sat, 11 Dec 2021 17:49:01: 16000000 INFO @ Sat, 11 Dec 2021 17:49:06: 18000000 INFO @ Sat, 11 Dec 2021 17:49:07: 13000000 INFO @ Sat, 11 Dec 2021 17:49:09: 17000000 INFO @ Sat, 11 Dec 2021 17:49:15: 14000000 INFO @ Sat, 11 Dec 2021 17:49:15: 19000000 INFO @ Sat, 11 Dec 2021 17:49:17: 18000000 INFO @ Sat, 11 Dec 2021 17:49:23: 15000000 INFO @ Sat, 11 Dec 2021 17:49:24: 20000000 INFO @ Sat, 11 Dec 2021 17:49:25: 19000000 INFO @ Sat, 11 Dec 2021 17:49:31: 16000000 INFO @ Sat, 11 Dec 2021 17:49:33: 20000000 INFO @ Sat, 11 Dec 2021 17:49:33: 21000000 INFO @ Sat, 11 Dec 2021 17:49:39: 17000000 INFO @ Sat, 11 Dec 2021 17:49:41: 21000000 INFO @ Sat, 11 Dec 2021 17:49:42: 22000000 INFO @ Sat, 11 Dec 2021 17:49:46: 18000000 INFO @ Sat, 11 Dec 2021 17:49:48: 22000000 INFO @ Sat, 11 Dec 2021 17:49:51: 23000000 INFO @ Sat, 11 Dec 2021 17:49:54: 19000000 INFO @ Sat, 11 Dec 2021 17:49:56: 23000000 INFO @ Sat, 11 Dec 2021 17:50:00: 24000000 INFO @ Sat, 11 Dec 2021 17:50:02: 20000000 INFO @ Sat, 11 Dec 2021 17:50:04: 24000000 INFO @ Sat, 11 Dec 2021 17:50:09: 25000000 INFO @ Sat, 11 Dec 2021 17:50:10: 21000000 INFO @ Sat, 11 Dec 2021 17:50:12: 25000000 INFO @ Sat, 11 Dec 2021 17:50:18: 22000000 INFO @ Sat, 11 Dec 2021 17:50:19: 26000000 INFO @ Sat, 11 Dec 2021 17:50:20: 26000000 INFO @ Sat, 11 Dec 2021 17:50:26: 23000000 INFO @ Sat, 11 Dec 2021 17:50:28: 27000000 INFO @ Sat, 11 Dec 2021 17:50:28: 27000000 INFO @ Sat, 11 Dec 2021 17:50:34: 24000000 INFO @ Sat, 11 Dec 2021 17:50:36: 28000000 INFO @ Sat, 11 Dec 2021 17:50:37: 28000000 INFO @ Sat, 11 Dec 2021 17:50:41: 25000000 INFO @ Sat, 11 Dec 2021 17:50:44: 29000000 INFO @ Sat, 11 Dec 2021 17:50:45: 29000000 INFO @ Sat, 11 Dec 2021 17:50:49: 26000000 INFO @ Sat, 11 Dec 2021 17:50:51: 30000000 INFO @ Sat, 11 Dec 2021 17:50:52: 30000000 INFO @ Sat, 11 Dec 2021 17:50:57: 27000000 INFO @ Sat, 11 Dec 2021 17:50:59: 31000000 INFO @ Sat, 11 Dec 2021 17:51:00: 31000000 INFO @ Sat, 11 Dec 2021 17:51:04: 28000000 INFO @ Sat, 11 Dec 2021 17:51:08: 32000000 INFO @ Sat, 11 Dec 2021 17:51:09: 32000000 INFO @ Sat, 11 Dec 2021 17:51:12: 29000000 INFO @ Sat, 11 Dec 2021 17:51:15: 33000000 INFO @ Sat, 11 Dec 2021 17:51:16: 33000000 INFO @ Sat, 11 Dec 2021 17:51:20: 30000000 INFO @ Sat, 11 Dec 2021 17:51:23: 34000000 INFO @ Sat, 11 Dec 2021 17:51:24: 34000000 INFO @ Sat, 11 Dec 2021 17:51:27: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 17:51:31: 35000000 INFO @ Sat, 11 Dec 2021 17:51:32: 35000000 INFO @ Sat, 11 Dec 2021 17:51:35: 32000000 INFO @ Sat, 11 Dec 2021 17:51:39: 36000000 INFO @ Sat, 11 Dec 2021 17:51:40: 36000000 INFO @ Sat, 11 Dec 2021 17:51:42: 33000000 INFO @ Sat, 11 Dec 2021 17:51:46: 37000000 INFO @ Sat, 11 Dec 2021 17:51:48: 37000000 INFO @ Sat, 11 Dec 2021 17:51:50: 34000000 INFO @ Sat, 11 Dec 2021 17:51:54: 38000000 INFO @ Sat, 11 Dec 2021 17:51:55: 38000000 INFO @ Sat, 11 Dec 2021 17:51:57: 35000000 INFO @ Sat, 11 Dec 2021 17:52:02: 39000000 INFO @ Sat, 11 Dec 2021 17:52:03: 39000000 INFO @ Sat, 11 Dec 2021 17:52:05: 36000000 INFO @ Sat, 11 Dec 2021 17:52:09: 40000000 INFO @ Sat, 11 Dec 2021 17:52:10: 40000000 INFO @ Sat, 11 Dec 2021 17:52:12: 37000000 INFO @ Sat, 11 Dec 2021 17:52:17: 41000000 INFO @ Sat, 11 Dec 2021 17:52:18: 41000000 INFO @ Sat, 11 Dec 2021 17:52:20: 38000000 INFO @ Sat, 11 Dec 2021 17:52:24: 42000000 INFO @ Sat, 11 Dec 2021 17:52:25: 42000000 INFO @ Sat, 11 Dec 2021 17:52:27: 39000000 INFO @ Sat, 11 Dec 2021 17:52:32: 43000000 INFO @ Sat, 11 Dec 2021 17:52:33: 43000000 INFO @ Sat, 11 Dec 2021 17:52:35: 40000000 INFO @ Sat, 11 Dec 2021 17:52:39: 44000000 INFO @ Sat, 11 Dec 2021 17:52:40: 44000000 INFO @ Sat, 11 Dec 2021 17:52:42: 41000000 INFO @ Sat, 11 Dec 2021 17:52:47: 45000000 INFO @ Sat, 11 Dec 2021 17:52:48: 45000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 17:52:50: 42000000 INFO @ Sat, 11 Dec 2021 17:52:54: 46000000 INFO @ Sat, 11 Dec 2021 17:52:55: 46000000 INFO @ Sat, 11 Dec 2021 17:52:57: 43000000 INFO @ Sat, 11 Dec 2021 17:53:01: #1 tag size is determined as 151 bps INFO @ Sat, 11 Dec 2021 17:53:01: #1 tag size = 151 INFO @ Sat, 11 Dec 2021 17:53:01: #1 total tags in treatment: 20202681 INFO @ Sat, 11 Dec 2021 17:53:01: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 17:53:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 17:53:01: #1 tags after filtering in treatment: 18195389 INFO @ Sat, 11 Dec 2021 17:53:01: #1 Redundant rate of treatment: 0.10 INFO @ Sat, 11 Dec 2021 17:53:01: #1 finished! INFO @ Sat, 11 Dec 2021 17:53:01: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 17:53:01: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 17:53:02: #1 tag size is determined as 151 bps INFO @ Sat, 11 Dec 2021 17:53:02: #1 tag size = 151 INFO @ Sat, 11 Dec 2021 17:53:02: #1 total tags in treatment: 20202681 INFO @ Sat, 11 Dec 2021 17:53:02: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 17:53:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 17:53:02: #1 tags after filtering in treatment: 18195389 INFO @ Sat, 11 Dec 2021 17:53:02: #1 Redundant rate of treatment: 0.10 INFO @ Sat, 11 Dec 2021 17:53:02: #1 finished! INFO @ Sat, 11 Dec 2021 17:53:02: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 17:53:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 17:53:02: #2 number of paired peaks: 670 WARNING @ Sat, 11 Dec 2021 17:53:02: Fewer paired peaks (670) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 670 pairs to build model! INFO @ Sat, 11 Dec 2021 17:53:02: start model_add_line... INFO @ Sat, 11 Dec 2021 17:53:02: start X-correlation... INFO @ Sat, 11 Dec 2021 17:53:02: end of X-cor INFO @ Sat, 11 Dec 2021 17:53:02: #2 finished! INFO @ Sat, 11 Dec 2021 17:53:02: #2 predicted fragment length is 232 bps INFO @ Sat, 11 Dec 2021 17:53:02: #2 alternative fragment length(s) may be 232 bps INFO @ Sat, 11 Dec 2021 17:53:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.05_model.r WARNING @ Sat, 11 Dec 2021 17:53:02: #2 Since the d (232) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 17:53:02: #2 You may need to consider one of the other alternative d(s): 232 WARNING @ Sat, 11 Dec 2021 17:53:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 17:53:02: #3 Call peaks... INFO @ Sat, 11 Dec 2021 17:53:02: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 17:53:03: #2 number of paired peaks: 670 WARNING @ Sat, 11 Dec 2021 17:53:03: Fewer paired peaks (670) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 670 pairs to build model! INFO @ Sat, 11 Dec 2021 17:53:03: start model_add_line... INFO @ Sat, 11 Dec 2021 17:53:03: start X-correlation... INFO @ Sat, 11 Dec 2021 17:53:03: end of X-cor INFO @ Sat, 11 Dec 2021 17:53:03: #2 finished! INFO @ Sat, 11 Dec 2021 17:53:03: #2 predicted fragment length is 232 bps INFO @ Sat, 11 Dec 2021 17:53:03: #2 alternative fragment length(s) may be 232 bps INFO @ Sat, 11 Dec 2021 17:53:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.10_model.r WARNING @ Sat, 11 Dec 2021 17:53:03: #2 Since the d (232) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 17:53:03: #2 You may need to consider one of the other alternative d(s): 232 WARNING @ Sat, 11 Dec 2021 17:53:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 17:53:03: #3 Call peaks... INFO @ Sat, 11 Dec 2021 17:53:03: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 17:53:04: 44000000 INFO @ Sat, 11 Dec 2021 17:53:11: 45000000 INFO @ Sat, 11 Dec 2021 17:53:18: 46000000 INFO @ Sat, 11 Dec 2021 17:53:24: #1 tag size is determined as 151 bps INFO @ Sat, 11 Dec 2021 17:53:24: #1 tag size = 151 INFO @ Sat, 11 Dec 2021 17:53:24: #1 total tags in treatment: 20202681 INFO @ Sat, 11 Dec 2021 17:53:24: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 17:53:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 17:53:24: #1 tags after filtering in treatment: 18195389 INFO @ Sat, 11 Dec 2021 17:53:24: #1 Redundant rate of treatment: 0.10 INFO @ Sat, 11 Dec 2021 17:53:24: #1 finished! INFO @ Sat, 11 Dec 2021 17:53:24: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 17:53:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 17:53:26: #2 number of paired peaks: 670 WARNING @ Sat, 11 Dec 2021 17:53:26: Fewer paired peaks (670) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 670 pairs to build model! INFO @ Sat, 11 Dec 2021 17:53:26: start model_add_line... INFO @ Sat, 11 Dec 2021 17:53:26: start X-correlation... INFO @ Sat, 11 Dec 2021 17:53:26: end of X-cor INFO @ Sat, 11 Dec 2021 17:53:26: #2 finished! INFO @ Sat, 11 Dec 2021 17:53:26: #2 predicted fragment length is 232 bps INFO @ Sat, 11 Dec 2021 17:53:26: #2 alternative fragment length(s) may be 232 bps INFO @ Sat, 11 Dec 2021 17:53:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.20_model.r WARNING @ Sat, 11 Dec 2021 17:53:26: #2 Since the d (232) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 17:53:26: #2 You may need to consider one of the other alternative d(s): 232 WARNING @ Sat, 11 Dec 2021 17:53:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 17:53:26: #3 Call peaks... INFO @ Sat, 11 Dec 2021 17:53:26: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 17:53:41: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 17:53:42: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 17:54:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.05_peaks.xls INFO @ Sat, 11 Dec 2021 17:54:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 17:54:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.05_summits.bed INFO @ Sat, 11 Dec 2021 17:54:00: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (4355 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 17:54:01: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.10_peaks.xls INFO @ Sat, 11 Dec 2021 17:54:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 17:54:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.10_summits.bed INFO @ Sat, 11 Dec 2021 17:54:01: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2921 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 17:54:04: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 17:54:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.20_peaks.xls INFO @ Sat, 11 Dec 2021 17:54:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 17:54:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694703/SRX8694703.20_summits.bed INFO @ Sat, 11 Dec 2021 17:54:22: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (1690 records, 4 fields): 4 millis CompletedMACS2peakCalling