Job ID = 14167236 SRX = SRX8688901 Genome = dm3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 6014330 spots for SRR12174212/SRR12174212.sra Written 6014330 spots for SRR12174212/SRR12174212.sra fastq に変換しました。 bowtie でマッピング中... Your job 14167773 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:24 6014330 reads; of these: 6014330 (100.00%) were unpaired; of these: 394545 (6.56%) aligned 0 times 4848054 (80.61%) aligned exactly 1 time 771731 (12.83%) aligned >1 times 93.44% overall alignment rate Time searching: 00:01:24 Overall time: 00:01:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_rmdupse_core] 189945 / 5619785 = 0.0338 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 11:13:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 11:13:40: #1 read tag files... INFO @ Fri, 10 Dec 2021 11:13:40: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 11:13:45: 1000000 INFO @ Fri, 10 Dec 2021 11:13:50: 2000000 INFO @ Fri, 10 Dec 2021 11:13:55: 3000000 INFO @ Fri, 10 Dec 2021 11:14:00: 4000000 INFO @ Fri, 10 Dec 2021 11:14:05: 5000000 INFO @ Fri, 10 Dec 2021 11:14:07: #1 tag size is determined as 50 bps INFO @ Fri, 10 Dec 2021 11:14:07: #1 tag size = 50 INFO @ Fri, 10 Dec 2021 11:14:07: #1 total tags in treatment: 5429840 INFO @ Fri, 10 Dec 2021 11:14:07: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 11:14:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 11:14:07: #1 tags after filtering in treatment: 5429840 INFO @ Fri, 10 Dec 2021 11:14:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Dec 2021 11:14:07: #1 finished! INFO @ Fri, 10 Dec 2021 11:14:07: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 11:14:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 11:14:08: #2 number of paired peaks: 18 WARNING @ Fri, 10 Dec 2021 11:14:08: Too few paired peaks (18) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 10 Dec 2021 11:14:08: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 11:14:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 11:14:10: #1 read tag files... INFO @ Fri, 10 Dec 2021 11:14:10: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 11:14:15: 1000000 INFO @ Fri, 10 Dec 2021 11:14:20: 2000000 INFO @ Fri, 10 Dec 2021 11:14:25: 3000000 INFO @ Fri, 10 Dec 2021 11:14:30: 4000000 INFO @ Fri, 10 Dec 2021 11:14:35: 5000000 INFO @ Fri, 10 Dec 2021 11:14:37: #1 tag size is determined as 50 bps INFO @ Fri, 10 Dec 2021 11:14:37: #1 tag size = 50 INFO @ Fri, 10 Dec 2021 11:14:37: #1 total tags in treatment: 5429840 INFO @ Fri, 10 Dec 2021 11:14:37: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 11:14:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 11:14:37: #1 tags after filtering in treatment: 5429840 INFO @ Fri, 10 Dec 2021 11:14:37: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Dec 2021 11:14:37: #1 finished! INFO @ Fri, 10 Dec 2021 11:14:37: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 11:14:37: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 11:14:37: #2 number of paired peaks: 18 WARNING @ Fri, 10 Dec 2021 11:14:37: Too few paired peaks (18) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 10 Dec 2021 11:14:37: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 11:14:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 11:14:40: #1 read tag files... INFO @ Fri, 10 Dec 2021 11:14:40: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 11:14:45: 1000000 INFO @ Fri, 10 Dec 2021 11:14:50: 2000000 INFO @ Fri, 10 Dec 2021 11:14:55: 3000000 INFO @ Fri, 10 Dec 2021 11:15:00: 4000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 11:15:05: 5000000 INFO @ Fri, 10 Dec 2021 11:15:07: #1 tag size is determined as 50 bps INFO @ Fri, 10 Dec 2021 11:15:07: #1 tag size = 50 INFO @ Fri, 10 Dec 2021 11:15:07: #1 total tags in treatment: 5429840 INFO @ Fri, 10 Dec 2021 11:15:07: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 11:15:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 11:15:07: #1 tags after filtering in treatment: 5429840 INFO @ Fri, 10 Dec 2021 11:15:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Dec 2021 11:15:07: #1 finished! INFO @ Fri, 10 Dec 2021 11:15:07: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 11:15:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 11:15:07: #2 number of paired peaks: 18 WARNING @ Fri, 10 Dec 2021 11:15:07: Too few paired peaks (18) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 10 Dec 2021 11:15:07: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX8688901/SRX8688901.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BigWig に変換しました。