Job ID = 6627011 SRX = SRX8325343 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-07-14T00:20:51 prefetch.2.10.7: 1) Downloading 'SRR11772149'... 2020-07-14T00:20:51 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:25:42 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:25:42 prefetch.2.10.7: 1) 'SRR11772149' was downloaded successfully 2020-07-14T00:25:42 prefetch.2.10.7: 'SRR11772149' has 0 unresolved dependencies Read 25620152 spots for SRR11772149/SRR11772149.sra Written 25620152 spots for SRR11772149/SRR11772149.sra fastq に変換しました。 bowtie でマッピング中... Your job 6627445 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:20:38 25620152 reads; of these: 25620152 (100.00%) were paired; of these: 2865564 (11.18%) aligned concordantly 0 times 15083421 (58.87%) aligned concordantly exactly 1 time 7671167 (29.94%) aligned concordantly >1 times ---- 2865564 pairs aligned concordantly 0 times; of these: 1227213 (42.83%) aligned discordantly 1 time ---- 1638351 pairs aligned 0 times concordantly or discordantly; of these: 3276702 mates make up the pairs; of these: 1328252 (40.54%) aligned 0 times 852841 (26.03%) aligned exactly 1 time 1095609 (33.44%) aligned >1 times 97.41% overall alignment rate Time searching: 01:20:38 Overall time: 01:20:38 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3940376 / 22735754 = 0.1733 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 11:09:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 11:09:59: #1 read tag files... INFO @ Tue, 14 Jul 2020 11:09:59: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 11:10:09: 1000000 INFO @ Tue, 14 Jul 2020 11:10:18: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 11:10:28: 3000000 INFO @ Tue, 14 Jul 2020 11:10:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 11:10:28: #1 read tag files... INFO @ Tue, 14 Jul 2020 11:10:28: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 11:10:39: 1000000 INFO @ Tue, 14 Jul 2020 11:10:39: 4000000 INFO @ Tue, 14 Jul 2020 11:10:49: 2000000 INFO @ Tue, 14 Jul 2020 11:10:49: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 11:10:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 11:10:58: #1 read tag files... INFO @ Tue, 14 Jul 2020 11:10:58: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 11:11:00: 3000000 INFO @ Tue, 14 Jul 2020 11:11:00: 6000000 INFO @ Tue, 14 Jul 2020 11:11:09: 1000000 INFO @ Tue, 14 Jul 2020 11:11:10: 4000000 INFO @ Tue, 14 Jul 2020 11:11:11: 7000000 INFO @ Tue, 14 Jul 2020 11:11:20: 2000000 INFO @ Tue, 14 Jul 2020 11:11:21: 5000000 INFO @ Tue, 14 Jul 2020 11:11:21: 8000000 INFO @ Tue, 14 Jul 2020 11:11:30: 3000000 INFO @ Tue, 14 Jul 2020 11:11:31: 9000000 INFO @ Tue, 14 Jul 2020 11:11:32: 6000000 INFO @ Tue, 14 Jul 2020 11:11:41: 4000000 INFO @ Tue, 14 Jul 2020 11:11:42: 10000000 INFO @ Tue, 14 Jul 2020 11:11:43: 7000000 INFO @ Tue, 14 Jul 2020 11:11:52: 11000000 INFO @ Tue, 14 Jul 2020 11:11:52: 5000000 INFO @ Tue, 14 Jul 2020 11:11:54: 8000000 INFO @ Tue, 14 Jul 2020 11:12:02: 12000000 INFO @ Tue, 14 Jul 2020 11:12:03: 6000000 INFO @ Tue, 14 Jul 2020 11:12:05: 9000000 INFO @ Tue, 14 Jul 2020 11:12:12: 13000000 INFO @ Tue, 14 Jul 2020 11:12:15: 7000000 INFO @ Tue, 14 Jul 2020 11:12:17: 10000000 INFO @ Tue, 14 Jul 2020 11:12:22: 14000000 INFO @ Tue, 14 Jul 2020 11:12:26: 8000000 INFO @ Tue, 14 Jul 2020 11:12:28: 11000000 INFO @ Tue, 14 Jul 2020 11:12:32: 15000000 INFO @ Tue, 14 Jul 2020 11:12:37: 9000000 INFO @ Tue, 14 Jul 2020 11:12:39: 12000000 INFO @ Tue, 14 Jul 2020 11:12:42: 16000000 INFO @ Tue, 14 Jul 2020 11:12:49: 10000000 INFO @ Tue, 14 Jul 2020 11:12:51: 13000000 INFO @ Tue, 14 Jul 2020 11:12:52: 17000000 INFO @ Tue, 14 Jul 2020 11:13:00: 11000000 INFO @ Tue, 14 Jul 2020 11:13:02: 14000000 INFO @ Tue, 14 Jul 2020 11:13:02: 18000000 INFO @ Tue, 14 Jul 2020 11:13:11: 12000000 INFO @ Tue, 14 Jul 2020 11:13:12: 19000000 INFO @ Tue, 14 Jul 2020 11:13:13: 15000000 INFO @ Tue, 14 Jul 2020 11:13:22: 20000000 INFO @ Tue, 14 Jul 2020 11:13:23: 13000000 INFO @ Tue, 14 Jul 2020 11:13:25: 16000000 INFO @ Tue, 14 Jul 2020 11:13:32: 21000000 INFO @ Tue, 14 Jul 2020 11:13:35: 14000000 INFO @ Tue, 14 Jul 2020 11:13:37: 17000000 INFO @ Tue, 14 Jul 2020 11:13:42: 22000000 INFO @ Tue, 14 Jul 2020 11:13:46: 15000000 INFO @ Tue, 14 Jul 2020 11:13:48: 18000000 INFO @ Tue, 14 Jul 2020 11:13:52: 23000000 INFO @ Tue, 14 Jul 2020 11:13:57: 16000000 INFO @ Tue, 14 Jul 2020 11:13:59: 19000000 INFO @ Tue, 14 Jul 2020 11:14:02: 24000000 INFO @ Tue, 14 Jul 2020 11:14:09: 17000000 INFO @ Tue, 14 Jul 2020 11:14:11: 20000000 INFO @ Tue, 14 Jul 2020 11:14:12: 25000000 INFO @ Tue, 14 Jul 2020 11:14:20: 18000000 INFO @ Tue, 14 Jul 2020 11:14:22: 26000000 INFO @ Tue, 14 Jul 2020 11:14:23: 21000000 INFO @ Tue, 14 Jul 2020 11:14:31: 19000000 INFO @ Tue, 14 Jul 2020 11:14:32: 27000000 INFO @ Tue, 14 Jul 2020 11:14:34: 22000000 INFO @ Tue, 14 Jul 2020 11:14:42: 28000000 INFO @ Tue, 14 Jul 2020 11:14:43: 20000000 INFO @ Tue, 14 Jul 2020 11:14:46: 23000000 INFO @ Tue, 14 Jul 2020 11:14:52: 29000000 INFO @ Tue, 14 Jul 2020 11:14:54: 21000000 INFO @ Tue, 14 Jul 2020 11:14:58: 24000000 INFO @ Tue, 14 Jul 2020 11:15:02: 30000000 INFO @ Tue, 14 Jul 2020 11:15:06: 22000000 INFO @ Tue, 14 Jul 2020 11:15:09: 25000000 INFO @ Tue, 14 Jul 2020 11:15:11: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 14 Jul 2020 11:15:17: 23000000 INFO @ Tue, 14 Jul 2020 11:15:21: 26000000 INFO @ Tue, 14 Jul 2020 11:15:21: 32000000 INFO @ Tue, 14 Jul 2020 11:15:28: 24000000 INFO @ Tue, 14 Jul 2020 11:15:31: 33000000 INFO @ Tue, 14 Jul 2020 11:15:33: 27000000 INFO @ Tue, 14 Jul 2020 11:15:40: 25000000 INFO @ Tue, 14 Jul 2020 11:15:41: 34000000 INFO @ Tue, 14 Jul 2020 11:15:44: 28000000 INFO @ Tue, 14 Jul 2020 11:15:51: 26000000 INFO @ Tue, 14 Jul 2020 11:15:51: 35000000 INFO @ Tue, 14 Jul 2020 11:15:56: 29000000 INFO @ Tue, 14 Jul 2020 11:16:01: 36000000 INFO @ Tue, 14 Jul 2020 11:16:02: 27000000 INFO @ Tue, 14 Jul 2020 11:16:07: 30000000 INFO @ Tue, 14 Jul 2020 11:16:11: 37000000 INFO @ Tue, 14 Jul 2020 11:16:14: 28000000 INFO @ Tue, 14 Jul 2020 11:16:18: 31000000 INFO @ Tue, 14 Jul 2020 11:16:21: 38000000 INFO @ Tue, 14 Jul 2020 11:16:25: 29000000 INFO @ Tue, 14 Jul 2020 11:16:30: 32000000 BigWig に変換しました。 INFO @ Tue, 14 Jul 2020 11:16:31: 39000000 INFO @ Tue, 14 Jul 2020 11:16:37: 30000000 INFO @ Tue, 14 Jul 2020 11:16:40: 40000000 INFO @ Tue, 14 Jul 2020 11:16:41: 33000000 INFO @ Tue, 14 Jul 2020 11:16:48: 31000000 INFO @ Tue, 14 Jul 2020 11:16:50: 41000000 INFO @ Tue, 14 Jul 2020 11:16:53: 34000000 INFO @ Tue, 14 Jul 2020 11:16:59: 32000000 INFO @ Tue, 14 Jul 2020 11:17:00: 42000000 INFO @ Tue, 14 Jul 2020 11:17:01: #1 tag size is determined as 144 bps INFO @ Tue, 14 Jul 2020 11:17:01: #1 tag size = 144 INFO @ Tue, 14 Jul 2020 11:17:01: #1 total tags in treatment: 18935115 INFO @ Tue, 14 Jul 2020 11:17:01: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 11:17:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 11:17:01: #1 tags after filtering in treatment: 16429372 INFO @ Tue, 14 Jul 2020 11:17:01: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 14 Jul 2020 11:17:01: #1 finished! INFO @ Tue, 14 Jul 2020 11:17:01: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 11:17:01: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 11:17:02: #2 number of paired peaks: 100 WARNING @ Tue, 14 Jul 2020 11:17:02: Fewer paired peaks (100) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 100 pairs to build model! INFO @ Tue, 14 Jul 2020 11:17:02: start model_add_line... INFO @ Tue, 14 Jul 2020 11:17:02: start X-correlation... INFO @ Tue, 14 Jul 2020 11:17:02: end of X-cor INFO @ Tue, 14 Jul 2020 11:17:02: #2 finished! INFO @ Tue, 14 Jul 2020 11:17:02: #2 predicted fragment length is 161 bps INFO @ Tue, 14 Jul 2020 11:17:02: #2 alternative fragment length(s) may be 161 bps INFO @ Tue, 14 Jul 2020 11:17:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.05_model.r WARNING @ Tue, 14 Jul 2020 11:17:02: #2 Since the d (161) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 14 Jul 2020 11:17:02: #2 You may need to consider one of the other alternative d(s): 161 WARNING @ Tue, 14 Jul 2020 11:17:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 14 Jul 2020 11:17:02: #3 Call peaks... INFO @ Tue, 14 Jul 2020 11:17:02: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 11:17:04: 35000000 INFO @ Tue, 14 Jul 2020 11:17:10: 33000000 INFO @ Tue, 14 Jul 2020 11:17:15: 36000000 INFO @ Tue, 14 Jul 2020 11:17:21: 34000000 INFO @ Tue, 14 Jul 2020 11:17:27: 37000000 INFO @ Tue, 14 Jul 2020 11:17:33: 35000000 INFO @ Tue, 14 Jul 2020 11:17:33: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 11:17:38: 38000000 INFO @ Tue, 14 Jul 2020 11:17:44: 36000000 INFO @ Tue, 14 Jul 2020 11:17:49: 39000000 INFO @ Tue, 14 Jul 2020 11:17:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.05_peaks.xls INFO @ Tue, 14 Jul 2020 11:17:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.05_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 11:17:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.05_summits.bed INFO @ Tue, 14 Jul 2020 11:17:49: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (3279 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 11:17:55: 37000000 INFO @ Tue, 14 Jul 2020 11:18:00: 40000000 INFO @ Tue, 14 Jul 2020 11:18:06: 38000000 INFO @ Tue, 14 Jul 2020 11:18:11: 41000000 INFO @ Tue, 14 Jul 2020 11:18:17: 39000000 INFO @ Tue, 14 Jul 2020 11:18:22: 42000000 INFO @ Tue, 14 Jul 2020 11:18:22: #1 tag size is determined as 144 bps INFO @ Tue, 14 Jul 2020 11:18:22: #1 tag size = 144 INFO @ Tue, 14 Jul 2020 11:18:22: #1 total tags in treatment: 18935115 INFO @ Tue, 14 Jul 2020 11:18:22: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 11:18:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 11:18:22: #1 tags after filtering in treatment: 16429372 INFO @ Tue, 14 Jul 2020 11:18:22: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 14 Jul 2020 11:18:22: #1 finished! INFO @ Tue, 14 Jul 2020 11:18:22: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 11:18:22: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 11:18:23: #2 number of paired peaks: 100 WARNING @ Tue, 14 Jul 2020 11:18:23: Fewer paired peaks (100) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 100 pairs to build model! INFO @ Tue, 14 Jul 2020 11:18:23: start model_add_line... INFO @ Tue, 14 Jul 2020 11:18:24: start X-correlation... INFO @ Tue, 14 Jul 2020 11:18:24: end of X-cor INFO @ Tue, 14 Jul 2020 11:18:24: #2 finished! INFO @ Tue, 14 Jul 2020 11:18:24: #2 predicted fragment length is 161 bps INFO @ Tue, 14 Jul 2020 11:18:24: #2 alternative fragment length(s) may be 161 bps INFO @ Tue, 14 Jul 2020 11:18:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.10_model.r WARNING @ Tue, 14 Jul 2020 11:18:24: #2 Since the d (161) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 14 Jul 2020 11:18:24: #2 You may need to consider one of the other alternative d(s): 161 WARNING @ Tue, 14 Jul 2020 11:18:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 14 Jul 2020 11:18:24: #3 Call peaks... INFO @ Tue, 14 Jul 2020 11:18:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 11:18:27: 40000000 INFO @ Tue, 14 Jul 2020 11:18:37: 41000000 INFO @ Tue, 14 Jul 2020 11:18:47: 42000000 INFO @ Tue, 14 Jul 2020 11:18:47: #1 tag size is determined as 144 bps INFO @ Tue, 14 Jul 2020 11:18:47: #1 tag size = 144 INFO @ Tue, 14 Jul 2020 11:18:47: #1 total tags in treatment: 18935115 INFO @ Tue, 14 Jul 2020 11:18:47: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 11:18:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 11:18:48: #1 tags after filtering in treatment: 16429372 INFO @ Tue, 14 Jul 2020 11:18:48: #1 Redundant rate of treatment: 0.13 INFO @ Tue, 14 Jul 2020 11:18:48: #1 finished! INFO @ Tue, 14 Jul 2020 11:18:48: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 11:18:48: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 11:18:49: #2 number of paired peaks: 100 WARNING @ Tue, 14 Jul 2020 11:18:49: Fewer paired peaks (100) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 100 pairs to build model! INFO @ Tue, 14 Jul 2020 11:18:49: start model_add_line... INFO @ Tue, 14 Jul 2020 11:18:49: start X-correlation... INFO @ Tue, 14 Jul 2020 11:18:49: end of X-cor INFO @ Tue, 14 Jul 2020 11:18:49: #2 finished! INFO @ Tue, 14 Jul 2020 11:18:49: #2 predicted fragment length is 161 bps INFO @ Tue, 14 Jul 2020 11:18:49: #2 alternative fragment length(s) may be 161 bps INFO @ Tue, 14 Jul 2020 11:18:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.20_model.r WARNING @ Tue, 14 Jul 2020 11:18:49: #2 Since the d (161) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 14 Jul 2020 11:18:49: #2 You may need to consider one of the other alternative d(s): 161 WARNING @ Tue, 14 Jul 2020 11:18:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 14 Jul 2020 11:18:49: #3 Call peaks... INFO @ Tue, 14 Jul 2020 11:18:49: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 11:18:57: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 11:19:13: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.10_peaks.xls INFO @ Tue, 14 Jul 2020 11:19:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.10_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 11:19:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.10_summits.bed INFO @ Tue, 14 Jul 2020 11:19:13: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (1344 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 11:19:22: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 11:19:38: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.20_peaks.xls INFO @ Tue, 14 Jul 2020 11:19:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.20_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 11:19:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8325343/SRX8325343.20_summits.bed INFO @ Tue, 14 Jul 2020 11:19:38: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (367 records, 4 fields): 1 millis CompletedMACS2peakCalling