Job ID = 6627001 SRX = SRX8156228 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-07-14T00:15:52 prefetch.2.10.7: 1) Downloading 'SRR11588765'... 2020-07-14T00:15:52 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:17:56 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:17:56 prefetch.2.10.7: 1) 'SRR11588765' was downloaded successfully 2020-07-14T00:18:34 prefetch.2.10.7: 'SRR11588765' has 7 unresolved dependencies 2020-07-14T00:18:34 prefetch.2.10.7: 2) Downloading 'ncbi-acc:AE013599.5?vdb-ctx=refseq'... 2020-07-14T00:18:34 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:18:47 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:18:47 prefetch.2.10.7: 2) 'ncbi-acc:AE013599.5?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:18:47 prefetch.2.10.7: 3) Downloading 'ncbi-acc:AE014134.6?vdb-ctx=refseq'... 2020-07-14T00:18:47 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:19:00 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:19:00 prefetch.2.10.7: 3) 'ncbi-acc:AE014134.6?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:19:00 prefetch.2.10.7: 4) Downloading 'ncbi-acc:AE014135.4?vdb-ctx=refseq'... 2020-07-14T00:19:00 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:19:08 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:19:08 prefetch.2.10.7: 4) 'ncbi-acc:AE014135.4?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:19:08 prefetch.2.10.7: 5) Downloading 'ncbi-acc:AE014296.5?vdb-ctx=refseq'... 2020-07-14T00:19:08 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:19:21 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:19:21 prefetch.2.10.7: 5) 'ncbi-acc:AE014296.5?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:19:21 prefetch.2.10.7: 6) Downloading 'ncbi-acc:AE014297.3?vdb-ctx=refseq'... 2020-07-14T00:19:21 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:19:39 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:19:39 prefetch.2.10.7: 6) 'ncbi-acc:AE014297.3?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:19:39 prefetch.2.10.7: 7) Downloading 'ncbi-acc:AE014298.5?vdb-ctx=refseq'... 2020-07-14T00:19:39 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:19:52 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:19:52 prefetch.2.10.7: 7) 'ncbi-acc:AE014298.5?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:19:52 prefetch.2.10.7: 8) Downloading 'ncbi-acc:CP007106.1?vdb-ctx=refseq'... 2020-07-14T00:19:52 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:20:01 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:20:01 prefetch.2.10.7: 8) 'ncbi-acc:CP007106.1?vdb-ctx=refseq' was downloaded successfully Read 24628085 spots for SRR11588765/SRR11588765.sra Written 24628085 spots for SRR11588765/SRR11588765.sra fastq に変換しました。 bowtie でマッピング中... Your job 6627357 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:43:30 24628085 reads; of these: 24628085 (100.00%) were paired; of these: 1644064 (6.68%) aligned concordantly 0 times 19260997 (78.21%) aligned concordantly exactly 1 time 3723024 (15.12%) aligned concordantly >1 times ---- 1644064 pairs aligned concordantly 0 times; of these: 298965 (18.18%) aligned discordantly 1 time ---- 1345099 pairs aligned 0 times concordantly or discordantly; of these: 2690198 mates make up the pairs; of these: 1518881 (56.46%) aligned 0 times 731043 (27.17%) aligned exactly 1 time 440274 (16.37%) aligned >1 times 96.92% overall alignment rate Time searching: 00:43:30 Overall time: 00:43:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1299263 / 23134956 = 0.0562 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 10:35:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 10:35:50: #1 read tag files... INFO @ Tue, 14 Jul 2020 10:35:50: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 10:35:55: 1000000 INFO @ Tue, 14 Jul 2020 10:36:01: 2000000 INFO @ Tue, 14 Jul 2020 10:36:06: 3000000 INFO @ Tue, 14 Jul 2020 10:36:11: 4000000 INFO @ Tue, 14 Jul 2020 10:36:16: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 10:36:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 10:36:20: #1 read tag files... INFO @ Tue, 14 Jul 2020 10:36:20: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 10:36:22: 6000000 INFO @ Tue, 14 Jul 2020 10:36:26: 1000000 INFO @ Tue, 14 Jul 2020 10:36:27: 7000000 INFO @ Tue, 14 Jul 2020 10:36:32: 2000000 INFO @ Tue, 14 Jul 2020 10:36:33: 8000000 INFO @ Tue, 14 Jul 2020 10:36:38: 3000000 INFO @ Tue, 14 Jul 2020 10:36:38: 9000000 INFO @ Tue, 14 Jul 2020 10:36:44: 10000000 INFO @ Tue, 14 Jul 2020 10:36:44: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 10:36:50: 11000000 INFO @ Tue, 14 Jul 2020 10:36:50: 5000000 INFO @ Tue, 14 Jul 2020 10:36:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 10:36:50: #1 read tag files... INFO @ Tue, 14 Jul 2020 10:36:50: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 10:36:55: 12000000 INFO @ Tue, 14 Jul 2020 10:36:56: 6000000 INFO @ Tue, 14 Jul 2020 10:36:56: 1000000 INFO @ Tue, 14 Jul 2020 10:37:01: 13000000 INFO @ Tue, 14 Jul 2020 10:37:02: 7000000 INFO @ Tue, 14 Jul 2020 10:37:03: 2000000 INFO @ Tue, 14 Jul 2020 10:37:06: 14000000 INFO @ Tue, 14 Jul 2020 10:37:08: 8000000 INFO @ Tue, 14 Jul 2020 10:37:09: 3000000 INFO @ Tue, 14 Jul 2020 10:37:12: 15000000 INFO @ Tue, 14 Jul 2020 10:37:14: 9000000 INFO @ Tue, 14 Jul 2020 10:37:15: 4000000 INFO @ Tue, 14 Jul 2020 10:37:17: 16000000 INFO @ Tue, 14 Jul 2020 10:37:20: 10000000 INFO @ Tue, 14 Jul 2020 10:37:21: 5000000 INFO @ Tue, 14 Jul 2020 10:37:23: 17000000 INFO @ Tue, 14 Jul 2020 10:37:26: 11000000 INFO @ Tue, 14 Jul 2020 10:37:28: 6000000 INFO @ Tue, 14 Jul 2020 10:37:28: 18000000 INFO @ Tue, 14 Jul 2020 10:37:32: 12000000 INFO @ Tue, 14 Jul 2020 10:37:34: 19000000 INFO @ Tue, 14 Jul 2020 10:37:34: 7000000 INFO @ Tue, 14 Jul 2020 10:37:38: 13000000 INFO @ Tue, 14 Jul 2020 10:37:39: 20000000 INFO @ Tue, 14 Jul 2020 10:37:40: 8000000 INFO @ Tue, 14 Jul 2020 10:37:44: 14000000 INFO @ Tue, 14 Jul 2020 10:37:45: 21000000 INFO @ Tue, 14 Jul 2020 10:37:47: 9000000 INFO @ Tue, 14 Jul 2020 10:37:50: 15000000 INFO @ Tue, 14 Jul 2020 10:37:50: 22000000 INFO @ Tue, 14 Jul 2020 10:37:53: 10000000 INFO @ Tue, 14 Jul 2020 10:37:56: 23000000 INFO @ Tue, 14 Jul 2020 10:37:56: 16000000 INFO @ Tue, 14 Jul 2020 10:37:59: 11000000 INFO @ Tue, 14 Jul 2020 10:38:01: 24000000 INFO @ Tue, 14 Jul 2020 10:38:02: 17000000 INFO @ Tue, 14 Jul 2020 10:38:05: 12000000 INFO @ Tue, 14 Jul 2020 10:38:07: 25000000 INFO @ Tue, 14 Jul 2020 10:38:08: 18000000 INFO @ Tue, 14 Jul 2020 10:38:12: 13000000 INFO @ Tue, 14 Jul 2020 10:38:12: 26000000 INFO @ Tue, 14 Jul 2020 10:38:14: 19000000 INFO @ Tue, 14 Jul 2020 10:38:18: 14000000 INFO @ Tue, 14 Jul 2020 10:38:18: 27000000 INFO @ Tue, 14 Jul 2020 10:38:20: 20000000 INFO @ Tue, 14 Jul 2020 10:38:23: 28000000 INFO @ Tue, 14 Jul 2020 10:38:24: 15000000 INFO @ Tue, 14 Jul 2020 10:38:26: 21000000 INFO @ Tue, 14 Jul 2020 10:38:29: 29000000 INFO @ Tue, 14 Jul 2020 10:38:30: 16000000 INFO @ Tue, 14 Jul 2020 10:38:32: 22000000 INFO @ Tue, 14 Jul 2020 10:38:34: 30000000 INFO @ Tue, 14 Jul 2020 10:38:37: 17000000 INFO @ Tue, 14 Jul 2020 10:38:38: 23000000 INFO @ Tue, 14 Jul 2020 10:38:40: 31000000 INFO @ Tue, 14 Jul 2020 10:38:42: 18000000 INFO @ Tue, 14 Jul 2020 10:38:44: 24000000 INFO @ Tue, 14 Jul 2020 10:38:45: 32000000 INFO @ Tue, 14 Jul 2020 10:38:49: 19000000 INFO @ Tue, 14 Jul 2020 10:38:50: 25000000 INFO @ Tue, 14 Jul 2020 10:38:51: 33000000 INFO @ Tue, 14 Jul 2020 10:38:55: 20000000 INFO @ Tue, 14 Jul 2020 10:38:56: 34000000 INFO @ Tue, 14 Jul 2020 10:38:56: 26000000 INFO @ Tue, 14 Jul 2020 10:39:01: 21000000 INFO @ Tue, 14 Jul 2020 10:39:02: 35000000 INFO @ Tue, 14 Jul 2020 10:39:02: 27000000 INFO @ Tue, 14 Jul 2020 10:39:07: 22000000 INFO @ Tue, 14 Jul 2020 10:39:07: 36000000 INFO @ Tue, 14 Jul 2020 10:39:08: 28000000 INFO @ Tue, 14 Jul 2020 10:39:13: 37000000 INFO @ Tue, 14 Jul 2020 10:39:13: 23000000 INFO @ Tue, 14 Jul 2020 10:39:14: 29000000 INFO @ Tue, 14 Jul 2020 10:39:18: 38000000 INFO @ Tue, 14 Jul 2020 10:39:19: 24000000 INFO @ Tue, 14 Jul 2020 10:39:20: 30000000 INFO @ Tue, 14 Jul 2020 10:39:24: 39000000 INFO @ Tue, 14 Jul 2020 10:39:25: 25000000 INFO @ Tue, 14 Jul 2020 10:39:26: 31000000 INFO @ Tue, 14 Jul 2020 10:39:30: 40000000 INFO @ Tue, 14 Jul 2020 10:39:31: 26000000 INFO @ Tue, 14 Jul 2020 10:39:32: 32000000 INFO @ Tue, 14 Jul 2020 10:39:35: 41000000 INFO @ Tue, 14 Jul 2020 10:39:38: 27000000 INFO @ Tue, 14 Jul 2020 10:39:38: 33000000 INFO @ Tue, 14 Jul 2020 10:39:41: 42000000 INFO @ Tue, 14 Jul 2020 10:39:44: 34000000 INFO @ Tue, 14 Jul 2020 10:39:44: 28000000 INFO @ Tue, 14 Jul 2020 10:39:46: 43000000 INFO @ Tue, 14 Jul 2020 10:39:50: 35000000 INFO @ Tue, 14 Jul 2020 10:39:50: 29000000 INFO @ Tue, 14 Jul 2020 10:39:52: 44000000 INFO @ Tue, 14 Jul 2020 10:39:56: 36000000 INFO @ Tue, 14 Jul 2020 10:39:56: 30000000 INFO @ Tue, 14 Jul 2020 10:39:57: 45000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 14 Jul 2020 10:39:58: #1 tag size is determined as 75 bps INFO @ Tue, 14 Jul 2020 10:39:58: #1 tag size = 75 INFO @ Tue, 14 Jul 2020 10:39:58: #1 total tags in treatment: 21689655 INFO @ Tue, 14 Jul 2020 10:39:58: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 10:39:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 10:39:59: #1 tags after filtering in treatment: 16214049 INFO @ Tue, 14 Jul 2020 10:39:59: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 14 Jul 2020 10:39:59: #1 finished! INFO @ Tue, 14 Jul 2020 10:39:59: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 10:39:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 10:40:00: #2 number of paired peaks: 7452 INFO @ Tue, 14 Jul 2020 10:40:00: start model_add_line... INFO @ Tue, 14 Jul 2020 10:40:01: start X-correlation... INFO @ Tue, 14 Jul 2020 10:40:01: end of X-cor INFO @ Tue, 14 Jul 2020 10:40:01: #2 finished! INFO @ Tue, 14 Jul 2020 10:40:01: #2 predicted fragment length is 186 bps INFO @ Tue, 14 Jul 2020 10:40:01: #2 alternative fragment length(s) may be 186 bps INFO @ Tue, 14 Jul 2020 10:40:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.05_model.r INFO @ Tue, 14 Jul 2020 10:40:01: #3 Call peaks... INFO @ Tue, 14 Jul 2020 10:40:01: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 10:40:02: 37000000 INFO @ Tue, 14 Jul 2020 10:40:02: 31000000 INFO @ Tue, 14 Jul 2020 10:40:08: 38000000 INFO @ Tue, 14 Jul 2020 10:40:08: 32000000 INFO @ Tue, 14 Jul 2020 10:40:14: 39000000 INFO @ Tue, 14 Jul 2020 10:40:14: 33000000 INFO @ Tue, 14 Jul 2020 10:40:20: 40000000 INFO @ Tue, 14 Jul 2020 10:40:20: 34000000 INFO @ Tue, 14 Jul 2020 10:40:25: 41000000 INFO @ Tue, 14 Jul 2020 10:40:27: 35000000 INFO @ Tue, 14 Jul 2020 10:40:31: 42000000 INFO @ Tue, 14 Jul 2020 10:40:33: 36000000 INFO @ Tue, 14 Jul 2020 10:40:37: 43000000 INFO @ Tue, 14 Jul 2020 10:40:39: 37000000 INFO @ Tue, 14 Jul 2020 10:40:43: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 10:40:43: 44000000 INFO @ Tue, 14 Jul 2020 10:40:45: 38000000 BigWig に変換しました。 INFO @ Tue, 14 Jul 2020 10:40:49: 45000000 INFO @ Tue, 14 Jul 2020 10:40:50: #1 tag size is determined as 75 bps INFO @ Tue, 14 Jul 2020 10:40:50: #1 tag size = 75 INFO @ Tue, 14 Jul 2020 10:40:50: #1 total tags in treatment: 21689655 INFO @ Tue, 14 Jul 2020 10:40:50: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 10:40:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 10:40:51: #1 tags after filtering in treatment: 16214049 INFO @ Tue, 14 Jul 2020 10:40:51: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 14 Jul 2020 10:40:51: #1 finished! INFO @ Tue, 14 Jul 2020 10:40:51: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 10:40:51: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 10:40:51: 39000000 INFO @ Tue, 14 Jul 2020 10:40:52: #2 number of paired peaks: 7452 INFO @ Tue, 14 Jul 2020 10:40:52: start model_add_line... INFO @ Tue, 14 Jul 2020 10:40:53: start X-correlation... INFO @ Tue, 14 Jul 2020 10:40:53: end of X-cor INFO @ Tue, 14 Jul 2020 10:40:53: #2 finished! INFO @ Tue, 14 Jul 2020 10:40:53: #2 predicted fragment length is 186 bps INFO @ Tue, 14 Jul 2020 10:40:53: #2 alternative fragment length(s) may be 186 bps INFO @ Tue, 14 Jul 2020 10:40:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.10_model.r INFO @ Tue, 14 Jul 2020 10:40:53: #3 Call peaks... INFO @ Tue, 14 Jul 2020 10:40:53: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 10:40:57: 40000000 INFO @ Tue, 14 Jul 2020 10:41:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.05_peaks.xls INFO @ Tue, 14 Jul 2020 10:41:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.05_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 10:41:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.05_summits.bed INFO @ Tue, 14 Jul 2020 10:41:03: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (14831 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 10:41:03: 41000000 INFO @ Tue, 14 Jul 2020 10:41:09: 42000000 INFO @ Tue, 14 Jul 2020 10:41:16: 43000000 INFO @ Tue, 14 Jul 2020 10:41:22: 44000000 INFO @ Tue, 14 Jul 2020 10:41:28: 45000000 INFO @ Tue, 14 Jul 2020 10:41:29: #1 tag size is determined as 75 bps INFO @ Tue, 14 Jul 2020 10:41:29: #1 tag size = 75 INFO @ Tue, 14 Jul 2020 10:41:29: #1 total tags in treatment: 21689655 INFO @ Tue, 14 Jul 2020 10:41:29: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 10:41:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 10:41:29: #1 tags after filtering in treatment: 16214049 INFO @ Tue, 14 Jul 2020 10:41:29: #1 Redundant rate of treatment: 0.25 INFO @ Tue, 14 Jul 2020 10:41:29: #1 finished! INFO @ Tue, 14 Jul 2020 10:41:29: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 10:41:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 10:41:31: #2 number of paired peaks: 7452 INFO @ Tue, 14 Jul 2020 10:41:31: start model_add_line... INFO @ Tue, 14 Jul 2020 10:41:31: start X-correlation... INFO @ Tue, 14 Jul 2020 10:41:31: end of X-cor INFO @ Tue, 14 Jul 2020 10:41:31: #2 finished! INFO @ Tue, 14 Jul 2020 10:41:31: #2 predicted fragment length is 186 bps INFO @ Tue, 14 Jul 2020 10:41:31: #2 alternative fragment length(s) may be 186 bps INFO @ Tue, 14 Jul 2020 10:41:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.20_model.r INFO @ Tue, 14 Jul 2020 10:41:31: #3 Call peaks... INFO @ Tue, 14 Jul 2020 10:41:31: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 10:41:36: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 10:41:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.10_peaks.xls INFO @ Tue, 14 Jul 2020 10:41:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.10_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 10:41:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.10_summits.bed INFO @ Tue, 14 Jul 2020 10:41:56: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (12280 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 10:42:13: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 10:42:32: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.20_peaks.xls INFO @ Tue, 14 Jul 2020 10:42:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.20_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 10:42:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8156228/SRX8156228.20_summits.bed INFO @ Tue, 14 Jul 2020 10:42:32: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9295 records, 4 fields): 10 millis CompletedMACS2peakCalling