Job ID = 6627000 SRX = SRX8156227 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-07-14T00:15:52 prefetch.2.10.7: 1) Downloading 'SRR11588764'... 2020-07-14T00:15:52 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:17:44 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:17:44 prefetch.2.10.7: 1) 'SRR11588764' was downloaded successfully 2020-07-14T00:18:22 prefetch.2.10.7: 'SRR11588764' has 7 unresolved dependencies 2020-07-14T00:18:22 prefetch.2.10.7: 2) Downloading 'ncbi-acc:AE013599.5?vdb-ctx=refseq'... 2020-07-14T00:18:22 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:18:35 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:18:35 prefetch.2.10.7: 2) 'ncbi-acc:AE013599.5?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:18:35 prefetch.2.10.7: 3) Downloading 'ncbi-acc:AE014134.6?vdb-ctx=refseq'... 2020-07-14T00:18:35 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:18:48 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:18:48 prefetch.2.10.7: 3) 'ncbi-acc:AE014134.6?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:18:48 prefetch.2.10.7: 4) Downloading 'ncbi-acc:AE014135.4?vdb-ctx=refseq'... 2020-07-14T00:18:48 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:19:47 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:19:47 prefetch.2.10.7: 4) 'ncbi-acc:AE014135.4?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:19:47 prefetch.2.10.7: 5) Downloading 'ncbi-acc:AE014296.5?vdb-ctx=refseq'... 2020-07-14T00:19:47 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:19:59 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:19:59 prefetch.2.10.7: 5) 'ncbi-acc:AE014296.5?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:19:59 prefetch.2.10.7: 6) Downloading 'ncbi-acc:AE014297.3?vdb-ctx=refseq'... 2020-07-14T00:19:59 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:20:25 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:20:25 prefetch.2.10.7: 6) 'ncbi-acc:AE014297.3?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:20:25 prefetch.2.10.7: 7) Downloading 'ncbi-acc:AE014298.5?vdb-ctx=refseq'... 2020-07-14T00:20:25 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:21:35 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:21:35 prefetch.2.10.7: 7) 'ncbi-acc:AE014298.5?vdb-ctx=refseq' was downloaded successfully 2020-07-14T00:21:35 prefetch.2.10.7: 8) Downloading 'ncbi-acc:CP007106.1?vdb-ctx=refseq'... 2020-07-14T00:21:35 prefetch.2.10.7: Downloading via HTTPS... 2020-07-14T00:22:08 prefetch.2.10.7: HTTPS download succeed 2020-07-14T00:22:08 prefetch.2.10.7: 8) 'ncbi-acc:CP007106.1?vdb-ctx=refseq' was downloaded successfully Read 28276217 spots for SRR11588764/SRR11588764.sra Written 28276217 spots for SRR11588764/SRR11588764.sra fastq に変換しました。 bowtie でマッピング中... Your job 6627408 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:53:22 28276217 reads; of these: 28276217 (100.00%) were paired; of these: 2139029 (7.56%) aligned concordantly 0 times 21493618 (76.01%) aligned concordantly exactly 1 time 4643570 (16.42%) aligned concordantly >1 times ---- 2139029 pairs aligned concordantly 0 times; of these: 429912 (20.10%) aligned discordantly 1 time ---- 1709117 pairs aligned 0 times concordantly or discordantly; of these: 3418234 mates make up the pairs; of these: 1899377 (55.57%) aligned 0 times 903135 (26.42%) aligned exactly 1 time 615722 (18.01%) aligned >1 times 96.64% overall alignment rate Time searching: 00:53:22 Overall time: 00:53:22 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1401692 / 25802517 = 0.0543 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 10:51:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 10:51:27: #1 read tag files... INFO @ Tue, 14 Jul 2020 10:51:27: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 10:51:33: 1000000 INFO @ Tue, 14 Jul 2020 10:51:39: 2000000 INFO @ Tue, 14 Jul 2020 10:51:45: 3000000 INFO @ Tue, 14 Jul 2020 10:51:52: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 10:51:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 10:51:57: #1 read tag files... INFO @ Tue, 14 Jul 2020 10:51:57: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 10:51:58: 5000000 INFO @ Tue, 14 Jul 2020 10:52:04: 1000000 INFO @ Tue, 14 Jul 2020 10:52:05: 6000000 INFO @ Tue, 14 Jul 2020 10:52:11: 2000000 INFO @ Tue, 14 Jul 2020 10:52:13: 7000000 INFO @ Tue, 14 Jul 2020 10:52:18: 3000000 INFO @ Tue, 14 Jul 2020 10:52:20: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 10:52:25: 4000000 INFO @ Tue, 14 Jul 2020 10:52:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 10:52:27: #1 read tag files... INFO @ Tue, 14 Jul 2020 10:52:27: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 10:52:27: 9000000 INFO @ Tue, 14 Jul 2020 10:52:32: 5000000 INFO @ Tue, 14 Jul 2020 10:52:34: 1000000 INFO @ Tue, 14 Jul 2020 10:52:35: 10000000 INFO @ Tue, 14 Jul 2020 10:52:39: 6000000 INFO @ Tue, 14 Jul 2020 10:52:42: 2000000 INFO @ Tue, 14 Jul 2020 10:52:42: 11000000 INFO @ Tue, 14 Jul 2020 10:52:46: 7000000 INFO @ Tue, 14 Jul 2020 10:52:50: 3000000 INFO @ Tue, 14 Jul 2020 10:52:50: 12000000 INFO @ Tue, 14 Jul 2020 10:52:54: 8000000 INFO @ Tue, 14 Jul 2020 10:52:58: 4000000 INFO @ Tue, 14 Jul 2020 10:52:59: 13000000 INFO @ Tue, 14 Jul 2020 10:53:01: 9000000 INFO @ Tue, 14 Jul 2020 10:53:06: 5000000 INFO @ Tue, 14 Jul 2020 10:53:07: 14000000 INFO @ Tue, 14 Jul 2020 10:53:08: 10000000 INFO @ Tue, 14 Jul 2020 10:53:14: 6000000 INFO @ Tue, 14 Jul 2020 10:53:15: 15000000 INFO @ Tue, 14 Jul 2020 10:53:15: 11000000 INFO @ Tue, 14 Jul 2020 10:53:22: 7000000 INFO @ Tue, 14 Jul 2020 10:53:22: 12000000 INFO @ Tue, 14 Jul 2020 10:53:23: 16000000 INFO @ Tue, 14 Jul 2020 10:53:29: 13000000 INFO @ Tue, 14 Jul 2020 10:53:29: 8000000 INFO @ Tue, 14 Jul 2020 10:53:30: 17000000 INFO @ Tue, 14 Jul 2020 10:53:36: 14000000 INFO @ Tue, 14 Jul 2020 10:53:37: 9000000 INFO @ Tue, 14 Jul 2020 10:53:38: 18000000 INFO @ Tue, 14 Jul 2020 10:53:43: 15000000 INFO @ Tue, 14 Jul 2020 10:53:45: 10000000 INFO @ Tue, 14 Jul 2020 10:53:45: 19000000 INFO @ Tue, 14 Jul 2020 10:53:50: 16000000 INFO @ Tue, 14 Jul 2020 10:53:52: 11000000 INFO @ Tue, 14 Jul 2020 10:53:53: 20000000 INFO @ Tue, 14 Jul 2020 10:53:58: 17000000 INFO @ Tue, 14 Jul 2020 10:54:00: 12000000 INFO @ Tue, 14 Jul 2020 10:54:00: 21000000 INFO @ Tue, 14 Jul 2020 10:54:05: 18000000 INFO @ Tue, 14 Jul 2020 10:54:07: 13000000 INFO @ Tue, 14 Jul 2020 10:54:08: 22000000 INFO @ Tue, 14 Jul 2020 10:54:12: 19000000 INFO @ Tue, 14 Jul 2020 10:54:15: 14000000 INFO @ Tue, 14 Jul 2020 10:54:16: 23000000 INFO @ Tue, 14 Jul 2020 10:54:19: 20000000 INFO @ Tue, 14 Jul 2020 10:54:22: 15000000 INFO @ Tue, 14 Jul 2020 10:54:23: 24000000 INFO @ Tue, 14 Jul 2020 10:54:26: 21000000 INFO @ Tue, 14 Jul 2020 10:54:30: 16000000 INFO @ Tue, 14 Jul 2020 10:54:31: 25000000 INFO @ Tue, 14 Jul 2020 10:54:33: 22000000 INFO @ Tue, 14 Jul 2020 10:54:37: 17000000 INFO @ Tue, 14 Jul 2020 10:54:38: 26000000 INFO @ Tue, 14 Jul 2020 10:54:40: 23000000 INFO @ Tue, 14 Jul 2020 10:54:45: 18000000 INFO @ Tue, 14 Jul 2020 10:54:46: 27000000 INFO @ Tue, 14 Jul 2020 10:54:48: 24000000 INFO @ Tue, 14 Jul 2020 10:54:52: 19000000 INFO @ Tue, 14 Jul 2020 10:54:53: 28000000 INFO @ Tue, 14 Jul 2020 10:54:55: 25000000 INFO @ Tue, 14 Jul 2020 10:55:00: 20000000 INFO @ Tue, 14 Jul 2020 10:55:01: 29000000 INFO @ Tue, 14 Jul 2020 10:55:02: 26000000 INFO @ Tue, 14 Jul 2020 10:55:07: 21000000 INFO @ Tue, 14 Jul 2020 10:55:08: 30000000 INFO @ Tue, 14 Jul 2020 10:55:09: 27000000 INFO @ Tue, 14 Jul 2020 10:55:15: 22000000 INFO @ Tue, 14 Jul 2020 10:55:16: 31000000 INFO @ Tue, 14 Jul 2020 10:55:16: 28000000 INFO @ Tue, 14 Jul 2020 10:55:23: 23000000 INFO @ Tue, 14 Jul 2020 10:55:23: 29000000 INFO @ Tue, 14 Jul 2020 10:55:23: 32000000 INFO @ Tue, 14 Jul 2020 10:55:30: 24000000 INFO @ Tue, 14 Jul 2020 10:55:30: 30000000 INFO @ Tue, 14 Jul 2020 10:55:31: 33000000 INFO @ Tue, 14 Jul 2020 10:55:38: 31000000 INFO @ Tue, 14 Jul 2020 10:55:38: 25000000 INFO @ Tue, 14 Jul 2020 10:55:39: 34000000 INFO @ Tue, 14 Jul 2020 10:55:45: 32000000 INFO @ Tue, 14 Jul 2020 10:55:45: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 14 Jul 2020 10:55:46: 35000000 INFO @ Tue, 14 Jul 2020 10:55:52: 33000000 INFO @ Tue, 14 Jul 2020 10:55:53: 27000000 INFO @ Tue, 14 Jul 2020 10:55:54: 36000000 INFO @ Tue, 14 Jul 2020 10:56:00: 34000000 INFO @ Tue, 14 Jul 2020 10:56:01: 28000000 INFO @ Tue, 14 Jul 2020 10:56:02: 37000000 INFO @ Tue, 14 Jul 2020 10:56:07: 35000000 INFO @ Tue, 14 Jul 2020 10:56:09: 29000000 INFO @ Tue, 14 Jul 2020 10:56:10: 38000000 INFO @ Tue, 14 Jul 2020 10:56:14: 36000000 INFO @ Tue, 14 Jul 2020 10:56:17: 30000000 INFO @ Tue, 14 Jul 2020 10:56:18: 39000000 INFO @ Tue, 14 Jul 2020 10:56:22: 37000000 INFO @ Tue, 14 Jul 2020 10:56:25: 31000000 INFO @ Tue, 14 Jul 2020 10:56:25: 40000000 INFO @ Tue, 14 Jul 2020 10:56:29: 38000000 INFO @ Tue, 14 Jul 2020 10:56:32: 32000000 INFO @ Tue, 14 Jul 2020 10:56:33: 41000000 INFO @ Tue, 14 Jul 2020 10:56:36: 39000000 BigWig に変換しました。 INFO @ Tue, 14 Jul 2020 10:56:40: 33000000 INFO @ Tue, 14 Jul 2020 10:56:41: 42000000 INFO @ Tue, 14 Jul 2020 10:56:44: 40000000 INFO @ Tue, 14 Jul 2020 10:56:48: 34000000 INFO @ Tue, 14 Jul 2020 10:56:49: 43000000 INFO @ Tue, 14 Jul 2020 10:56:51: 41000000 INFO @ Tue, 14 Jul 2020 10:56:56: 35000000 INFO @ Tue, 14 Jul 2020 10:56:57: 44000000 INFO @ Tue, 14 Jul 2020 10:56:58: 42000000 INFO @ Tue, 14 Jul 2020 10:57:03: 36000000 INFO @ Tue, 14 Jul 2020 10:57:04: 45000000 INFO @ Tue, 14 Jul 2020 10:57:06: 43000000 INFO @ Tue, 14 Jul 2020 10:57:11: 37000000 INFO @ Tue, 14 Jul 2020 10:57:12: 46000000 INFO @ Tue, 14 Jul 2020 10:57:13: 44000000 INFO @ Tue, 14 Jul 2020 10:57:18: 38000000 INFO @ Tue, 14 Jul 2020 10:57:20: 47000000 INFO @ Tue, 14 Jul 2020 10:57:20: 45000000 INFO @ Tue, 14 Jul 2020 10:57:26: 39000000 INFO @ Tue, 14 Jul 2020 10:57:28: 48000000 INFO @ Tue, 14 Jul 2020 10:57:28: 46000000 INFO @ Tue, 14 Jul 2020 10:57:34: 40000000 INFO @ Tue, 14 Jul 2020 10:57:35: 47000000 INFO @ Tue, 14 Jul 2020 10:57:35: 49000000 INFO @ Tue, 14 Jul 2020 10:57:41: 41000000 INFO @ Tue, 14 Jul 2020 10:57:42: 48000000 INFO @ Tue, 14 Jul 2020 10:57:43: 50000000 INFO @ Tue, 14 Jul 2020 10:57:49: 42000000 INFO @ Tue, 14 Jul 2020 10:57:49: 49000000 INFO @ Tue, 14 Jul 2020 10:57:51: 51000000 INFO @ Tue, 14 Jul 2020 10:57:57: 50000000 INFO @ Tue, 14 Jul 2020 10:57:57: 43000000 INFO @ Tue, 14 Jul 2020 10:57:57: #1 tag size is determined as 75 bps INFO @ Tue, 14 Jul 2020 10:57:57: #1 tag size = 75 INFO @ Tue, 14 Jul 2020 10:57:57: #1 total tags in treatment: 24742627 INFO @ Tue, 14 Jul 2020 10:57:57: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 10:57:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 10:57:58: #1 tags after filtering in treatment: 17707922 INFO @ Tue, 14 Jul 2020 10:57:58: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 14 Jul 2020 10:57:58: #1 finished! INFO @ Tue, 14 Jul 2020 10:57:58: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 10:57:58: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 10:57:59: #2 number of paired peaks: 8096 INFO @ Tue, 14 Jul 2020 10:57:59: start model_add_line... INFO @ Tue, 14 Jul 2020 10:58:00: start X-correlation... INFO @ Tue, 14 Jul 2020 10:58:00: end of X-cor INFO @ Tue, 14 Jul 2020 10:58:00: #2 finished! INFO @ Tue, 14 Jul 2020 10:58:00: #2 predicted fragment length is 174 bps INFO @ Tue, 14 Jul 2020 10:58:00: #2 alternative fragment length(s) may be 174 bps INFO @ Tue, 14 Jul 2020 10:58:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.05_model.r INFO @ Tue, 14 Jul 2020 10:58:00: #3 Call peaks... INFO @ Tue, 14 Jul 2020 10:58:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 10:58:04: 51000000 INFO @ Tue, 14 Jul 2020 10:58:04: 44000000 INFO @ Tue, 14 Jul 2020 10:58:10: #1 tag size is determined as 75 bps INFO @ Tue, 14 Jul 2020 10:58:10: #1 tag size = 75 INFO @ Tue, 14 Jul 2020 10:58:10: #1 total tags in treatment: 24742627 INFO @ Tue, 14 Jul 2020 10:58:10: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 10:58:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 10:58:10: #1 tags after filtering in treatment: 17707922 INFO @ Tue, 14 Jul 2020 10:58:10: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 14 Jul 2020 10:58:10: #1 finished! INFO @ Tue, 14 Jul 2020 10:58:10: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 10:58:10: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 10:58:11: 45000000 INFO @ Tue, 14 Jul 2020 10:58:12: #2 number of paired peaks: 8096 INFO @ Tue, 14 Jul 2020 10:58:12: start model_add_line... INFO @ Tue, 14 Jul 2020 10:58:12: start X-correlation... INFO @ Tue, 14 Jul 2020 10:58:12: end of X-cor INFO @ Tue, 14 Jul 2020 10:58:12: #2 finished! INFO @ Tue, 14 Jul 2020 10:58:12: #2 predicted fragment length is 174 bps INFO @ Tue, 14 Jul 2020 10:58:12: #2 alternative fragment length(s) may be 174 bps INFO @ Tue, 14 Jul 2020 10:58:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.10_model.r INFO @ Tue, 14 Jul 2020 10:58:12: #3 Call peaks... INFO @ Tue, 14 Jul 2020 10:58:12: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 10:58:18: 46000000 INFO @ Tue, 14 Jul 2020 10:58:24: 47000000 INFO @ Tue, 14 Jul 2020 10:58:31: 48000000 INFO @ Tue, 14 Jul 2020 10:58:37: 49000000 INFO @ Tue, 14 Jul 2020 10:58:43: 50000000 INFO @ Tue, 14 Jul 2020 10:58:46: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 10:58:50: 51000000 INFO @ Tue, 14 Jul 2020 10:58:56: #1 tag size is determined as 75 bps INFO @ Tue, 14 Jul 2020 10:58:56: #1 tag size = 75 INFO @ Tue, 14 Jul 2020 10:58:56: #1 total tags in treatment: 24742627 INFO @ Tue, 14 Jul 2020 10:58:56: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 10:58:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 10:58:56: #1 tags after filtering in treatment: 17707922 INFO @ Tue, 14 Jul 2020 10:58:56: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 14 Jul 2020 10:58:56: #1 finished! INFO @ Tue, 14 Jul 2020 10:58:56: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 10:58:56: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 10:58:56: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 10:58:58: #2 number of paired peaks: 8096 INFO @ Tue, 14 Jul 2020 10:58:58: start model_add_line... INFO @ Tue, 14 Jul 2020 10:58:58: start X-correlation... INFO @ Tue, 14 Jul 2020 10:58:58: end of X-cor INFO @ Tue, 14 Jul 2020 10:58:58: #2 finished! INFO @ Tue, 14 Jul 2020 10:58:58: #2 predicted fragment length is 174 bps INFO @ Tue, 14 Jul 2020 10:58:58: #2 alternative fragment length(s) may be 174 bps INFO @ Tue, 14 Jul 2020 10:58:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.20_model.r INFO @ Tue, 14 Jul 2020 10:58:58: #3 Call peaks... INFO @ Tue, 14 Jul 2020 10:58:58: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 10:59:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.05_peaks.xls INFO @ Tue, 14 Jul 2020 10:59:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.05_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 10:59:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.05_summits.bed INFO @ Tue, 14 Jul 2020 10:59:08: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (14551 records, 4 fields): 16 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 10:59:16: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.10_peaks.xls INFO @ Tue, 14 Jul 2020 10:59:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.10_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 10:59:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.10_summits.bed INFO @ Tue, 14 Jul 2020 10:59:17: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (12611 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 10:59:43: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 11:00:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.20_peaks.xls INFO @ Tue, 14 Jul 2020 11:00:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.20_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 11:00:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8156227/SRX8156227.20_summits.bed INFO @ Tue, 14 Jul 2020 11:00:03: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (10190 records, 4 fields): 11 millis CompletedMACS2peakCalling