Job ID = 12265947 SRX = SRX7282589 Genome = dm3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 6211 spots for SRR10603068/SRR10603068.sra Written 6211 spots for SRR10603068/SRR10603068.sra fastq に変換しました。 bowtie でマッピング中... Your job 12266053 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:01 6211 reads; of these: 6211 (100.00%) were unpaired; of these: 776 (12.49%) aligned 0 times 161 (2.59%) aligned exactly 1 time 5274 (84.91%) aligned >1 times 87.51% overall alignment rate Time searching: 00:00:01 Overall time: 00:00:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_rmdupse_core] 4626 / 5435 = 0.8511 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:38:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:38:56: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:38:56: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:38:56: #1 tag size is determined as 54 bps INFO @ Sat, 03 Apr 2021 08:38:56: #1 tag size = 54 INFO @ Sat, 03 Apr 2021 08:38:56: #1 total tags in treatment: 809 INFO @ Sat, 03 Apr 2021 08:38:56: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:38:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:38:56: #1 tags after filtering in treatment: 808 INFO @ Sat, 03 Apr 2021 08:38:56: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 03 Apr 2021 08:38:56: #1 finished! INFO @ Sat, 03 Apr 2021 08:38:56: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:38:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:38:56: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 08:38:56: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 08:38:56: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 3 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:39:26: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:39:26: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:39:26: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:39:26: #1 tag size is determined as 54 bps INFO @ Sat, 03 Apr 2021 08:39:26: #1 tag size = 54 INFO @ Sat, 03 Apr 2021 08:39:26: #1 total tags in treatment: 809 INFO @ Sat, 03 Apr 2021 08:39:26: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:39:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:39:26: #1 tags after filtering in treatment: 808 INFO @ Sat, 03 Apr 2021 08:39:26: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 03 Apr 2021 08:39:26: #1 finished! INFO @ Sat, 03 Apr 2021 08:39:26: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:39:26: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:39:26: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 08:39:26: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 08:39:26: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:39:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:39:56: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:39:56: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:39:56: #1 tag size is determined as 54 bps INFO @ Sat, 03 Apr 2021 08:39:56: #1 tag size = 54 INFO @ Sat, 03 Apr 2021 08:39:56: #1 total tags in treatment: 809 INFO @ Sat, 03 Apr 2021 08:39:56: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:39:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:39:56: #1 tags after filtering in treatment: 808 INFO @ Sat, 03 Apr 2021 08:39:56: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 03 Apr 2021 08:39:56: #1 finished! INFO @ Sat, 03 Apr 2021 08:39:56: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:39:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:39:56: #2 number of paired peaks: 0 WARNING @ Sat, 03 Apr 2021 08:39:56: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 03 Apr 2021 08:39:56: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7282589/SRX7282589.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling