Job ID = 12265620 SRX = SRX7277037 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 31081184 spots for SRR10597302/SRR10597302.sra Written 31081184 spots for SRR10597302/SRR10597302.sra fastq に変換しました。 bowtie でマッピング中... Your job 12266410 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:02:37 31081184 reads; of these: 31081184 (100.00%) were paired; of these: 12365333 (39.78%) aligned concordantly 0 times 12504521 (40.23%) aligned concordantly exactly 1 time 6211330 (19.98%) aligned concordantly >1 times ---- 12365333 pairs aligned concordantly 0 times; of these: 2880837 (23.30%) aligned discordantly 1 time ---- 9484496 pairs aligned 0 times concordantly or discordantly; of these: 18968992 mates make up the pairs; of these: 15269689 (80.50%) aligned 0 times 873042 (4.60%) aligned exactly 1 time 2826261 (14.90%) aligned >1 times 75.44% overall alignment rate Time searching: 01:02:37 Overall time: 01:02:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4252824 / 21417836 = 0.1986 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:14:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:14:36: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:14:36: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:14:44: 1000000 INFO @ Sat, 03 Apr 2021 09:14:51: 2000000 INFO @ Sat, 03 Apr 2021 09:14:58: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:15:06: 4000000 INFO @ Sat, 03 Apr 2021 09:15:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:15:06: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:15:06: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:15:13: 5000000 INFO @ Sat, 03 Apr 2021 09:15:14: 1000000 INFO @ Sat, 03 Apr 2021 09:15:20: 6000000 INFO @ Sat, 03 Apr 2021 09:15:23: 2000000 INFO @ Sat, 03 Apr 2021 09:15:28: 7000000 INFO @ Sat, 03 Apr 2021 09:15:31: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:15:34: 8000000 INFO @ Sat, 03 Apr 2021 09:15:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:15:36: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:15:36: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:15:39: 4000000 INFO @ Sat, 03 Apr 2021 09:15:42: 9000000 INFO @ Sat, 03 Apr 2021 09:15:44: 1000000 INFO @ Sat, 03 Apr 2021 09:15:48: 5000000 INFO @ Sat, 03 Apr 2021 09:15:50: 10000000 INFO @ Sat, 03 Apr 2021 09:15:52: 2000000 INFO @ Sat, 03 Apr 2021 09:15:56: 6000000 INFO @ Sat, 03 Apr 2021 09:15:59: 11000000 INFO @ Sat, 03 Apr 2021 09:16:01: 3000000 INFO @ Sat, 03 Apr 2021 09:16:05: 7000000 INFO @ Sat, 03 Apr 2021 09:16:08: 12000000 INFO @ Sat, 03 Apr 2021 09:16:10: 4000000 INFO @ Sat, 03 Apr 2021 09:16:14: 8000000 INFO @ Sat, 03 Apr 2021 09:16:17: 13000000 INFO @ Sat, 03 Apr 2021 09:16:20: 5000000 INFO @ Sat, 03 Apr 2021 09:16:23: 9000000 INFO @ Sat, 03 Apr 2021 09:16:26: 14000000 INFO @ Sat, 03 Apr 2021 09:16:29: 6000000 INFO @ Sat, 03 Apr 2021 09:16:32: 10000000 INFO @ Sat, 03 Apr 2021 09:16:35: 15000000 INFO @ Sat, 03 Apr 2021 09:16:38: 7000000 INFO @ Sat, 03 Apr 2021 09:16:41: 11000000 INFO @ Sat, 03 Apr 2021 09:16:44: 16000000 INFO @ Sat, 03 Apr 2021 09:16:47: 8000000 INFO @ Sat, 03 Apr 2021 09:16:50: 12000000 INFO @ Sat, 03 Apr 2021 09:16:53: 17000000 INFO @ Sat, 03 Apr 2021 09:16:56: 9000000 INFO @ Sat, 03 Apr 2021 09:17:00: 13000000 INFO @ Sat, 03 Apr 2021 09:17:02: 18000000 INFO @ Sat, 03 Apr 2021 09:17:05: 10000000 INFO @ Sat, 03 Apr 2021 09:17:09: 14000000 INFO @ Sat, 03 Apr 2021 09:17:11: 19000000 INFO @ Sat, 03 Apr 2021 09:17:14: 11000000 INFO @ Sat, 03 Apr 2021 09:17:19: 15000000 INFO @ Sat, 03 Apr 2021 09:17:20: 20000000 INFO @ Sat, 03 Apr 2021 09:17:22: 12000000 INFO @ Sat, 03 Apr 2021 09:17:28: 16000000 INFO @ Sat, 03 Apr 2021 09:17:29: 21000000 INFO @ Sat, 03 Apr 2021 09:17:31: 13000000 INFO @ Sat, 03 Apr 2021 09:17:37: 17000000 INFO @ Sat, 03 Apr 2021 09:17:37: 22000000 INFO @ Sat, 03 Apr 2021 09:17:40: 14000000 INFO @ Sat, 03 Apr 2021 09:17:46: 23000000 INFO @ Sat, 03 Apr 2021 09:17:46: 18000000 INFO @ Sat, 03 Apr 2021 09:17:49: 15000000 INFO @ Sat, 03 Apr 2021 09:17:56: 19000000 INFO @ Sat, 03 Apr 2021 09:17:56: 24000000 INFO @ Sat, 03 Apr 2021 09:17:59: 16000000 INFO @ Sat, 03 Apr 2021 09:18:05: 25000000 INFO @ Sat, 03 Apr 2021 09:18:05: 20000000 INFO @ Sat, 03 Apr 2021 09:18:08: 17000000 INFO @ Sat, 03 Apr 2021 09:18:14: 26000000 INFO @ Sat, 03 Apr 2021 09:18:15: 21000000 INFO @ Sat, 03 Apr 2021 09:18:17: 18000000 INFO @ Sat, 03 Apr 2021 09:18:23: 27000000 INFO @ Sat, 03 Apr 2021 09:18:25: 22000000 INFO @ Sat, 03 Apr 2021 09:18:26: 19000000 INFO @ Sat, 03 Apr 2021 09:18:32: 28000000 INFO @ Sat, 03 Apr 2021 09:18:35: 23000000 INFO @ Sat, 03 Apr 2021 09:18:35: 20000000 INFO @ Sat, 03 Apr 2021 09:18:40: 29000000 INFO @ Sat, 03 Apr 2021 09:18:44: 21000000 INFO @ Sat, 03 Apr 2021 09:18:44: 24000000 INFO @ Sat, 03 Apr 2021 09:18:49: 30000000 INFO @ Sat, 03 Apr 2021 09:18:53: 22000000 INFO @ Sat, 03 Apr 2021 09:18:53: 25000000 INFO @ Sat, 03 Apr 2021 09:18:58: 31000000 INFO @ Sat, 03 Apr 2021 09:19:02: 23000000 INFO @ Sat, 03 Apr 2021 09:19:03: 26000000 INFO @ Sat, 03 Apr 2021 09:19:07: 32000000 INFO @ Sat, 03 Apr 2021 09:19:11: 24000000 INFO @ Sat, 03 Apr 2021 09:19:12: 27000000 INFO @ Sat, 03 Apr 2021 09:19:16: 33000000 INFO @ Sat, 03 Apr 2021 09:19:19: 25000000 INFO @ Sat, 03 Apr 2021 09:19:21: 28000000 INFO @ Sat, 03 Apr 2021 09:19:28: 34000000 INFO @ Sat, 03 Apr 2021 09:19:28: 26000000 INFO @ Sat, 03 Apr 2021 09:19:30: 29000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:19:37: 27000000 INFO @ Sat, 03 Apr 2021 09:19:39: 30000000 INFO @ Sat, 03 Apr 2021 09:19:40: 35000000 INFO @ Sat, 03 Apr 2021 09:19:46: 28000000 INFO @ Sat, 03 Apr 2021 09:19:48: 31000000 INFO @ Sat, 03 Apr 2021 09:19:49: 36000000 INFO @ Sat, 03 Apr 2021 09:19:55: 29000000 INFO @ Sat, 03 Apr 2021 09:19:57: 32000000 INFO @ Sat, 03 Apr 2021 09:19:58: 37000000 INFO @ Sat, 03 Apr 2021 09:20:03: 30000000 INFO @ Sat, 03 Apr 2021 09:20:07: 38000000 INFO @ Sat, 03 Apr 2021 09:20:08: 33000000 INFO @ Sat, 03 Apr 2021 09:20:11: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:20:11: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:20:11: #1 total tags in treatment: 14677460 INFO @ Sat, 03 Apr 2021 09:20:11: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:20:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:20:11: #1 tags after filtering in treatment: 11560785 INFO @ Sat, 03 Apr 2021 09:20:11: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 09:20:11: #1 finished! INFO @ Sat, 03 Apr 2021 09:20:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:20:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:20:12: #2 number of paired peaks: 239 WARNING @ Sat, 03 Apr 2021 09:20:12: Fewer paired peaks (239) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 239 pairs to build model! INFO @ Sat, 03 Apr 2021 09:20:12: start model_add_line... INFO @ Sat, 03 Apr 2021 09:20:12: start X-correlation... INFO @ Sat, 03 Apr 2021 09:20:12: end of X-cor INFO @ Sat, 03 Apr 2021 09:20:12: #2 finished! INFO @ Sat, 03 Apr 2021 09:20:12: #2 predicted fragment length is 85 bps INFO @ Sat, 03 Apr 2021 09:20:12: #2 alternative fragment length(s) may be 4,85 bps INFO @ Sat, 03 Apr 2021 09:20:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.05_model.r WARNING @ Sat, 03 Apr 2021 09:20:12: #2 Since the d (85) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:20:12: #2 You may need to consider one of the other alternative d(s): 4,85 WARNING @ Sat, 03 Apr 2021 09:20:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:20:12: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:20:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:20:13: 31000000 INFO @ Sat, 03 Apr 2021 09:20:18: 34000000 INFO @ Sat, 03 Apr 2021 09:20:20: 32000000 INFO @ Sat, 03 Apr 2021 09:20:28: 35000000 INFO @ Sat, 03 Apr 2021 09:20:29: 33000000 INFO @ Sat, 03 Apr 2021 09:20:35: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:20:37: 36000000 INFO @ Sat, 03 Apr 2021 09:20:37: 34000000 INFO @ Sat, 03 Apr 2021 09:20:45: 35000000 INFO @ Sat, 03 Apr 2021 09:20:46: 37000000 INFO @ Sat, 03 Apr 2021 09:20:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:20:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:20:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.05_summits.bed INFO @ Sat, 03 Apr 2021 09:20:48: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (7019 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:20:53: 36000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:20:55: 38000000 INFO @ Sat, 03 Apr 2021 09:20:58: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:20:58: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:20:58: #1 total tags in treatment: 14677460 INFO @ Sat, 03 Apr 2021 09:20:58: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:20:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:20:58: #1 tags after filtering in treatment: 11560785 INFO @ Sat, 03 Apr 2021 09:20:58: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 09:20:58: #1 finished! INFO @ Sat, 03 Apr 2021 09:20:58: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:20:58: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:20:59: #2 number of paired peaks: 239 WARNING @ Sat, 03 Apr 2021 09:20:59: Fewer paired peaks (239) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 239 pairs to build model! INFO @ Sat, 03 Apr 2021 09:20:59: start model_add_line... INFO @ Sat, 03 Apr 2021 09:20:59: start X-correlation... INFO @ Sat, 03 Apr 2021 09:20:59: end of X-cor INFO @ Sat, 03 Apr 2021 09:20:59: #2 finished! INFO @ Sat, 03 Apr 2021 09:20:59: #2 predicted fragment length is 85 bps INFO @ Sat, 03 Apr 2021 09:20:59: #2 alternative fragment length(s) may be 4,85 bps INFO @ Sat, 03 Apr 2021 09:20:59: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.10_model.r WARNING @ Sat, 03 Apr 2021 09:20:59: #2 Since the d (85) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:20:59: #2 You may need to consider one of the other alternative d(s): 4,85 WARNING @ Sat, 03 Apr 2021 09:20:59: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:20:59: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:20:59: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:21:00: 37000000 INFO @ Sat, 03 Apr 2021 09:21:08: 38000000 INFO @ Sat, 03 Apr 2021 09:21:12: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:21:12: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:21:12: #1 total tags in treatment: 14677460 INFO @ Sat, 03 Apr 2021 09:21:12: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:21:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:21:12: #1 tags after filtering in treatment: 11560785 INFO @ Sat, 03 Apr 2021 09:21:12: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 09:21:12: #1 finished! INFO @ Sat, 03 Apr 2021 09:21:12: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:21:12: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:21:13: #2 number of paired peaks: 239 WARNING @ Sat, 03 Apr 2021 09:21:13: Fewer paired peaks (239) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 239 pairs to build model! INFO @ Sat, 03 Apr 2021 09:21:13: start model_add_line... INFO @ Sat, 03 Apr 2021 09:21:13: start X-correlation... INFO @ Sat, 03 Apr 2021 09:21:13: end of X-cor INFO @ Sat, 03 Apr 2021 09:21:13: #2 finished! INFO @ Sat, 03 Apr 2021 09:21:13: #2 predicted fragment length is 85 bps INFO @ Sat, 03 Apr 2021 09:21:13: #2 alternative fragment length(s) may be 4,85 bps INFO @ Sat, 03 Apr 2021 09:21:13: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.20_model.r WARNING @ Sat, 03 Apr 2021 09:21:13: #2 Since the d (85) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:21:13: #2 You may need to consider one of the other alternative d(s): 4,85 WARNING @ Sat, 03 Apr 2021 09:21:13: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:21:13: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:21:13: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:21:23: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:21:35: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:21:36: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:21:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:21:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.10_summits.bed INFO @ Sat, 03 Apr 2021 09:21:36: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1769 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:21:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:21:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:21:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7277037/SRX7277037.20_summits.bed INFO @ Sat, 03 Apr 2021 09:21:47: Done! pass1 - making usageList (9 chroms): 1 millis pass2 - checking and writing primary data (250 records, 4 fields): 4 millis CompletedMACS2peakCalling