Job ID = 12265525 SRX = SRX7277014 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 34022762 spots for SRR10597279/SRR10597279.sra Written 34022762 spots for SRR10597279/SRR10597279.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265989 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:04:03 34022762 reads; of these: 34022762 (100.00%) were paired; of these: 13624263 (40.04%) aligned concordantly 0 times 11197428 (32.91%) aligned concordantly exactly 1 time 9201071 (27.04%) aligned concordantly >1 times ---- 13624263 pairs aligned concordantly 0 times; of these: 2235498 (16.41%) aligned discordantly 1 time ---- 11388765 pairs aligned 0 times concordantly or discordantly; of these: 22777530 mates make up the pairs; of these: 17615979 (77.34%) aligned 0 times 766992 (3.37%) aligned exactly 1 time 4394559 (19.29%) aligned >1 times 74.11% overall alignment rate Time searching: 01:04:03 Overall time: 01:04:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6169007 / 22431421 = 0.2750 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:54:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:54:48: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:54:48: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:54:55: 1000000 INFO @ Sat, 03 Apr 2021 08:55:01: 2000000 INFO @ Sat, 03 Apr 2021 08:55:08: 3000000 INFO @ Sat, 03 Apr 2021 08:55:15: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:55:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:55:18: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:55:18: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:55:22: 5000000 INFO @ Sat, 03 Apr 2021 08:55:26: 1000000 INFO @ Sat, 03 Apr 2021 08:55:30: 6000000 INFO @ Sat, 03 Apr 2021 08:55:33: 2000000 INFO @ Sat, 03 Apr 2021 08:55:38: 7000000 INFO @ Sat, 03 Apr 2021 08:55:42: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:55:46: 8000000 INFO @ Sat, 03 Apr 2021 08:55:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:55:48: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:55:48: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:55:50: 4000000 INFO @ Sat, 03 Apr 2021 08:55:54: 9000000 INFO @ Sat, 03 Apr 2021 08:55:56: 1000000 INFO @ Sat, 03 Apr 2021 08:55:58: 5000000 INFO @ Sat, 03 Apr 2021 08:56:02: 10000000 INFO @ Sat, 03 Apr 2021 08:56:05: 2000000 INFO @ Sat, 03 Apr 2021 08:56:07: 6000000 INFO @ Sat, 03 Apr 2021 08:56:10: 11000000 INFO @ Sat, 03 Apr 2021 08:56:13: 3000000 INFO @ Sat, 03 Apr 2021 08:56:15: 7000000 INFO @ Sat, 03 Apr 2021 08:56:18: 12000000 INFO @ Sat, 03 Apr 2021 08:56:22: 4000000 INFO @ Sat, 03 Apr 2021 08:56:24: 8000000 INFO @ Sat, 03 Apr 2021 08:56:25: 13000000 INFO @ Sat, 03 Apr 2021 08:56:30: 5000000 INFO @ Sat, 03 Apr 2021 08:56:32: 9000000 INFO @ Sat, 03 Apr 2021 08:56:33: 14000000 INFO @ Sat, 03 Apr 2021 08:56:39: 6000000 INFO @ Sat, 03 Apr 2021 08:56:40: 10000000 INFO @ Sat, 03 Apr 2021 08:56:41: 15000000 INFO @ Sat, 03 Apr 2021 08:56:47: 7000000 INFO @ Sat, 03 Apr 2021 08:56:47: 11000000 INFO @ Sat, 03 Apr 2021 08:56:49: 16000000 INFO @ Sat, 03 Apr 2021 08:56:55: 12000000 INFO @ Sat, 03 Apr 2021 08:56:55: 8000000 INFO @ Sat, 03 Apr 2021 08:56:56: 17000000 INFO @ Sat, 03 Apr 2021 08:57:03: 13000000 INFO @ Sat, 03 Apr 2021 08:57:04: 9000000 INFO @ Sat, 03 Apr 2021 08:57:04: 18000000 INFO @ Sat, 03 Apr 2021 08:57:11: 14000000 INFO @ Sat, 03 Apr 2021 08:57:12: 10000000 INFO @ Sat, 03 Apr 2021 08:57:12: 19000000 INFO @ Sat, 03 Apr 2021 08:57:19: 15000000 INFO @ Sat, 03 Apr 2021 08:57:20: 11000000 INFO @ Sat, 03 Apr 2021 08:57:20: 20000000 INFO @ Sat, 03 Apr 2021 08:57:27: 16000000 INFO @ Sat, 03 Apr 2021 08:57:28: 21000000 INFO @ Sat, 03 Apr 2021 08:57:28: 12000000 INFO @ Sat, 03 Apr 2021 08:57:35: 17000000 INFO @ Sat, 03 Apr 2021 08:57:35: 22000000 INFO @ Sat, 03 Apr 2021 08:57:36: 13000000 INFO @ Sat, 03 Apr 2021 08:57:43: 18000000 INFO @ Sat, 03 Apr 2021 08:57:43: 23000000 INFO @ Sat, 03 Apr 2021 08:57:44: 14000000 INFO @ Sat, 03 Apr 2021 08:57:51: 24000000 INFO @ Sat, 03 Apr 2021 08:57:51: 19000000 INFO @ Sat, 03 Apr 2021 08:57:52: 15000000 INFO @ Sat, 03 Apr 2021 08:57:58: 25000000 INFO @ Sat, 03 Apr 2021 08:57:59: 20000000 INFO @ Sat, 03 Apr 2021 08:58:00: 16000000 INFO @ Sat, 03 Apr 2021 08:58:06: 26000000 INFO @ Sat, 03 Apr 2021 08:58:06: 21000000 INFO @ Sat, 03 Apr 2021 08:58:08: 17000000 INFO @ Sat, 03 Apr 2021 08:58:13: 27000000 INFO @ Sat, 03 Apr 2021 08:58:14: 22000000 INFO @ Sat, 03 Apr 2021 08:58:15: 18000000 INFO @ Sat, 03 Apr 2021 08:58:20: 28000000 INFO @ Sat, 03 Apr 2021 08:58:21: 23000000 INFO @ Sat, 03 Apr 2021 08:58:23: 19000000 INFO @ Sat, 03 Apr 2021 08:58:27: 29000000 INFO @ Sat, 03 Apr 2021 08:58:29: 24000000 INFO @ Sat, 03 Apr 2021 08:58:31: 20000000 INFO @ Sat, 03 Apr 2021 08:58:35: 30000000 INFO @ Sat, 03 Apr 2021 08:58:37: 25000000 INFO @ Sat, 03 Apr 2021 08:58:39: 21000000 INFO @ Sat, 03 Apr 2021 08:58:42: 31000000 INFO @ Sat, 03 Apr 2021 08:58:44: 26000000 INFO @ Sat, 03 Apr 2021 08:58:46: 22000000 INFO @ Sat, 03 Apr 2021 08:58:50: 32000000 INFO @ Sat, 03 Apr 2021 08:58:52: 27000000 INFO @ Sat, 03 Apr 2021 08:58:54: 23000000 INFO @ Sat, 03 Apr 2021 08:58:58: 33000000 INFO @ Sat, 03 Apr 2021 08:59:00: 28000000 INFO @ Sat, 03 Apr 2021 08:59:02: 24000000 INFO @ Sat, 03 Apr 2021 08:59:06: 34000000 INFO @ Sat, 03 Apr 2021 08:59:07: 29000000 INFO @ Sat, 03 Apr 2021 08:59:10: 25000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:59:13: 35000000 INFO @ Sat, 03 Apr 2021 08:59:14: 30000000 INFO @ Sat, 03 Apr 2021 08:59:17: 26000000 INFO @ Sat, 03 Apr 2021 08:59:21: 36000000 INFO @ Sat, 03 Apr 2021 08:59:21: 31000000 INFO @ Sat, 03 Apr 2021 08:59:25: 27000000 INFO @ Sat, 03 Apr 2021 08:59:29: 37000000 INFO @ Sat, 03 Apr 2021 08:59:29: 32000000 INFO @ Sat, 03 Apr 2021 08:59:32: 28000000 INFO @ Sat, 03 Apr 2021 08:59:37: 38000000 INFO @ Sat, 03 Apr 2021 08:59:37: 33000000 INFO @ Sat, 03 Apr 2021 08:59:38: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 08:59:38: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 08:59:38: #1 total tags in treatment: 14414892 INFO @ Sat, 03 Apr 2021 08:59:38: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:59:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:59:38: #1 tags after filtering in treatment: 11553475 INFO @ Sat, 03 Apr 2021 08:59:38: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 03 Apr 2021 08:59:38: #1 finished! INFO @ Sat, 03 Apr 2021 08:59:38: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:59:38: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:59:39: #2 number of paired peaks: 231 WARNING @ Sat, 03 Apr 2021 08:59:39: Fewer paired peaks (231) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 231 pairs to build model! INFO @ Sat, 03 Apr 2021 08:59:39: start model_add_line... INFO @ Sat, 03 Apr 2021 08:59:39: start X-correlation... INFO @ Sat, 03 Apr 2021 08:59:39: end of X-cor INFO @ Sat, 03 Apr 2021 08:59:39: #2 finished! INFO @ Sat, 03 Apr 2021 08:59:39: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:59:39: #2 alternative fragment length(s) may be 4,86 bps INFO @ Sat, 03 Apr 2021 08:59:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.05_model.r WARNING @ Sat, 03 Apr 2021 08:59:39: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:59:39: #2 You may need to consider one of the other alternative d(s): 4,86 WARNING @ Sat, 03 Apr 2021 08:59:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:59:39: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:59:39: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:59:40: 29000000 INFO @ Sat, 03 Apr 2021 08:59:45: 34000000 INFO @ Sat, 03 Apr 2021 08:59:47: 30000000 INFO @ Sat, 03 Apr 2021 08:59:53: 35000000 INFO @ Sat, 03 Apr 2021 08:59:54: 31000000 INFO @ Sat, 03 Apr 2021 09:00:00: 36000000 INFO @ Sat, 03 Apr 2021 09:00:01: 32000000 INFO @ Sat, 03 Apr 2021 09:00:01: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:00:08: 37000000 INFO @ Sat, 03 Apr 2021 09:00:09: 33000000 INFO @ Sat, 03 Apr 2021 09:00:14: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:00:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:00:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.05_summits.bed INFO @ Sat, 03 Apr 2021 09:00:14: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (3216 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:00:15: 38000000 INFO @ Sat, 03 Apr 2021 09:00:16: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:00:16: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:00:16: #1 total tags in treatment: 14414892 INFO @ Sat, 03 Apr 2021 09:00:16: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:00:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:00:16: 34000000 INFO @ Sat, 03 Apr 2021 09:00:16: #1 tags after filtering in treatment: 11553475 INFO @ Sat, 03 Apr 2021 09:00:16: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 03 Apr 2021 09:00:16: #1 finished! INFO @ Sat, 03 Apr 2021 09:00:16: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:00:16: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:00:17: #2 number of paired peaks: 231 WARNING @ Sat, 03 Apr 2021 09:00:17: Fewer paired peaks (231) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 231 pairs to build model! INFO @ Sat, 03 Apr 2021 09:00:17: start model_add_line... INFO @ Sat, 03 Apr 2021 09:00:17: start X-correlation... INFO @ Sat, 03 Apr 2021 09:00:17: end of X-cor INFO @ Sat, 03 Apr 2021 09:00:17: #2 finished! INFO @ Sat, 03 Apr 2021 09:00:17: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 09:00:17: #2 alternative fragment length(s) may be 4,86 bps INFO @ Sat, 03 Apr 2021 09:00:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.10_model.r WARNING @ Sat, 03 Apr 2021 09:00:17: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:00:17: #2 You may need to consider one of the other alternative d(s): 4,86 WARNING @ Sat, 03 Apr 2021 09:00:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:00:17: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:00:17: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:00:23: 35000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:00:29: 36000000 INFO @ Sat, 03 Apr 2021 09:00:36: 37000000 INFO @ Sat, 03 Apr 2021 09:00:39: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:00:43: 38000000 INFO @ Sat, 03 Apr 2021 09:00:44: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 09:00:44: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 09:00:44: #1 total tags in treatment: 14414892 INFO @ Sat, 03 Apr 2021 09:00:44: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:00:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:00:44: #1 tags after filtering in treatment: 11553475 INFO @ Sat, 03 Apr 2021 09:00:44: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 03 Apr 2021 09:00:44: #1 finished! INFO @ Sat, 03 Apr 2021 09:00:44: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:00:44: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:00:45: #2 number of paired peaks: 231 WARNING @ Sat, 03 Apr 2021 09:00:45: Fewer paired peaks (231) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 231 pairs to build model! INFO @ Sat, 03 Apr 2021 09:00:45: start model_add_line... INFO @ Sat, 03 Apr 2021 09:00:45: start X-correlation... INFO @ Sat, 03 Apr 2021 09:00:45: end of X-cor INFO @ Sat, 03 Apr 2021 09:00:45: #2 finished! INFO @ Sat, 03 Apr 2021 09:00:45: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 09:00:45: #2 alternative fragment length(s) may be 4,86 bps INFO @ Sat, 03 Apr 2021 09:00:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.20_model.r WARNING @ Sat, 03 Apr 2021 09:00:45: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:00:45: #2 You may need to consider one of the other alternative d(s): 4,86 WARNING @ Sat, 03 Apr 2021 09:00:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:00:45: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:00:45: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:00:51: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:00:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:00:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.10_summits.bed INFO @ Sat, 03 Apr 2021 09:00:51: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (963 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:01:07: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:01:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:01:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:01:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7277014/SRX7277014.20_summits.bed INFO @ Sat, 03 Apr 2021 09:01:18: Done! pass1 - making usageList (10 chroms): 1 millis pass2 - checking and writing primary data (364 records, 4 fields): 2 millis CompletedMACS2peakCalling