Job ID = 6626575 SRX = SRX7224581 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 21993571 spots for SRR10541123/SRR10541123.sra Written 21993571 spots for SRR10541123/SRR10541123.sra fastq に変換しました。 bowtie でマッピング中... Your job 6626832 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:40:02 21993571 reads; of these: 21993571 (100.00%) were paired; of these: 1401437 (6.37%) aligned concordantly 0 times 16887971 (76.79%) aligned concordantly exactly 1 time 3704163 (16.84%) aligned concordantly >1 times ---- 1401437 pairs aligned concordantly 0 times; of these: 95457 (6.81%) aligned discordantly 1 time ---- 1305980 pairs aligned 0 times concordantly or discordantly; of these: 2611960 mates make up the pairs; of these: 1590982 (60.91%) aligned 0 times 644853 (24.69%) aligned exactly 1 time 376125 (14.40%) aligned >1 times 96.38% overall alignment rate Time searching: 00:40:02 Overall time: 00:40:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 20 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 515444 / 20606113 = 0.0250 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 08:32:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 08:32:40: #1 read tag files... INFO @ Tue, 14 Jul 2020 08:32:40: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 08:32:48: 1000000 INFO @ Tue, 14 Jul 2020 08:32:56: 2000000 INFO @ Tue, 14 Jul 2020 08:33:03: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 08:33:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 08:33:10: #1 read tag files... INFO @ Tue, 14 Jul 2020 08:33:10: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 08:33:11: 4000000 INFO @ Tue, 14 Jul 2020 08:33:19: 1000000 INFO @ Tue, 14 Jul 2020 08:33:19: 5000000 INFO @ Tue, 14 Jul 2020 08:33:27: 2000000 INFO @ Tue, 14 Jul 2020 08:33:28: 6000000 INFO @ Tue, 14 Jul 2020 08:33:35: 3000000 INFO @ Tue, 14 Jul 2020 08:33:36: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 14 Jul 2020 08:33:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 14 Jul 2020 08:33:40: #1 read tag files... INFO @ Tue, 14 Jul 2020 08:33:40: #1 read treatment tags... INFO @ Tue, 14 Jul 2020 08:33:44: 4000000 INFO @ Tue, 14 Jul 2020 08:33:45: 8000000 INFO @ Tue, 14 Jul 2020 08:33:49: 1000000 INFO @ Tue, 14 Jul 2020 08:33:52: 5000000 INFO @ Tue, 14 Jul 2020 08:33:54: 9000000 INFO @ Tue, 14 Jul 2020 08:33:58: 2000000 INFO @ Tue, 14 Jul 2020 08:34:01: 6000000 INFO @ Tue, 14 Jul 2020 08:34:03: 10000000 INFO @ Tue, 14 Jul 2020 08:34:07: 3000000 INFO @ Tue, 14 Jul 2020 08:34:09: 7000000 INFO @ Tue, 14 Jul 2020 08:34:12: 11000000 INFO @ Tue, 14 Jul 2020 08:34:15: 4000000 INFO @ Tue, 14 Jul 2020 08:34:18: 8000000 INFO @ Tue, 14 Jul 2020 08:34:21: 12000000 INFO @ Tue, 14 Jul 2020 08:34:24: 5000000 INFO @ Tue, 14 Jul 2020 08:34:26: 9000000 INFO @ Tue, 14 Jul 2020 08:34:30: 13000000 INFO @ Tue, 14 Jul 2020 08:34:33: 6000000 INFO @ Tue, 14 Jul 2020 08:34:35: 10000000 INFO @ Tue, 14 Jul 2020 08:34:39: 14000000 INFO @ Tue, 14 Jul 2020 08:34:41: 7000000 INFO @ Tue, 14 Jul 2020 08:34:43: 11000000 INFO @ Tue, 14 Jul 2020 08:34:48: 15000000 INFO @ Tue, 14 Jul 2020 08:34:50: 8000000 INFO @ Tue, 14 Jul 2020 08:34:52: 12000000 INFO @ Tue, 14 Jul 2020 08:34:57: 16000000 INFO @ Tue, 14 Jul 2020 08:34:59: 9000000 INFO @ Tue, 14 Jul 2020 08:35:00: 13000000 INFO @ Tue, 14 Jul 2020 08:35:06: 17000000 INFO @ Tue, 14 Jul 2020 08:35:08: 10000000 INFO @ Tue, 14 Jul 2020 08:35:08: 14000000 INFO @ Tue, 14 Jul 2020 08:35:15: 18000000 INFO @ Tue, 14 Jul 2020 08:35:16: 11000000 INFO @ Tue, 14 Jul 2020 08:35:17: 15000000 INFO @ Tue, 14 Jul 2020 08:35:24: 19000000 INFO @ Tue, 14 Jul 2020 08:35:25: 16000000 INFO @ Tue, 14 Jul 2020 08:35:25: 12000000 INFO @ Tue, 14 Jul 2020 08:35:33: 20000000 INFO @ Tue, 14 Jul 2020 08:35:34: 17000000 INFO @ Tue, 14 Jul 2020 08:35:34: 13000000 INFO @ Tue, 14 Jul 2020 08:35:42: 18000000 INFO @ Tue, 14 Jul 2020 08:35:42: 21000000 INFO @ Tue, 14 Jul 2020 08:35:43: 14000000 INFO @ Tue, 14 Jul 2020 08:35:50: 19000000 INFO @ Tue, 14 Jul 2020 08:35:51: 22000000 INFO @ Tue, 14 Jul 2020 08:35:52: 15000000 INFO @ Tue, 14 Jul 2020 08:35:59: 20000000 INFO @ Tue, 14 Jul 2020 08:36:00: 23000000 INFO @ Tue, 14 Jul 2020 08:36:01: 16000000 INFO @ Tue, 14 Jul 2020 08:36:07: 21000000 INFO @ Tue, 14 Jul 2020 08:36:09: 24000000 INFO @ Tue, 14 Jul 2020 08:36:10: 17000000 INFO @ Tue, 14 Jul 2020 08:36:15: 22000000 INFO @ Tue, 14 Jul 2020 08:36:18: 25000000 INFO @ Tue, 14 Jul 2020 08:36:19: 18000000 INFO @ Tue, 14 Jul 2020 08:36:24: 23000000 INFO @ Tue, 14 Jul 2020 08:36:27: 26000000 INFO @ Tue, 14 Jul 2020 08:36:28: 19000000 INFO @ Tue, 14 Jul 2020 08:36:33: 24000000 INFO @ Tue, 14 Jul 2020 08:36:36: 27000000 INFO @ Tue, 14 Jul 2020 08:36:37: 20000000 INFO @ Tue, 14 Jul 2020 08:36:42: 25000000 INFO @ Tue, 14 Jul 2020 08:36:45: 28000000 INFO @ Tue, 14 Jul 2020 08:36:46: 21000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 14 Jul 2020 08:36:51: 26000000 INFO @ Tue, 14 Jul 2020 08:36:54: 29000000 INFO @ Tue, 14 Jul 2020 08:36:55: 22000000 INFO @ Tue, 14 Jul 2020 08:37:00: 27000000 INFO @ Tue, 14 Jul 2020 08:37:03: 30000000 INFO @ Tue, 14 Jul 2020 08:37:04: 23000000 INFO @ Tue, 14 Jul 2020 08:37:09: 28000000 INFO @ Tue, 14 Jul 2020 08:37:12: 31000000 INFO @ Tue, 14 Jul 2020 08:37:14: 24000000 INFO @ Tue, 14 Jul 2020 08:37:18: 29000000 INFO @ Tue, 14 Jul 2020 08:37:21: 32000000 INFO @ Tue, 14 Jul 2020 08:37:23: 25000000 INFO @ Tue, 14 Jul 2020 08:37:26: 30000000 INFO @ Tue, 14 Jul 2020 08:37:31: 33000000 INFO @ Tue, 14 Jul 2020 08:37:32: 26000000 INFO @ Tue, 14 Jul 2020 08:37:35: 31000000 INFO @ Tue, 14 Jul 2020 08:37:40: 34000000 INFO @ Tue, 14 Jul 2020 08:37:41: 27000000 INFO @ Tue, 14 Jul 2020 08:37:44: 32000000 INFO @ Tue, 14 Jul 2020 08:37:49: 35000000 INFO @ Tue, 14 Jul 2020 08:37:50: 28000000 INFO @ Tue, 14 Jul 2020 08:37:54: 33000000 INFO @ Tue, 14 Jul 2020 08:37:58: 36000000 INFO @ Tue, 14 Jul 2020 08:37:59: 29000000 BigWig に変換しました。 INFO @ Tue, 14 Jul 2020 08:38:03: 34000000 INFO @ Tue, 14 Jul 2020 08:38:07: 30000000 INFO @ Tue, 14 Jul 2020 08:38:07: 37000000 INFO @ Tue, 14 Jul 2020 08:38:12: 35000000 INFO @ Tue, 14 Jul 2020 08:38:16: 31000000 INFO @ Tue, 14 Jul 2020 08:38:16: 38000000 INFO @ Tue, 14 Jul 2020 08:38:21: 36000000 INFO @ Tue, 14 Jul 2020 08:38:25: 32000000 INFO @ Tue, 14 Jul 2020 08:38:25: 39000000 INFO @ Tue, 14 Jul 2020 08:38:30: 37000000 INFO @ Tue, 14 Jul 2020 08:38:33: 33000000 INFO @ Tue, 14 Jul 2020 08:38:35: 40000000 INFO @ Tue, 14 Jul 2020 08:38:39: 38000000 INFO @ Tue, 14 Jul 2020 08:38:42: 34000000 INFO @ Tue, 14 Jul 2020 08:38:44: 41000000 INFO @ Tue, 14 Jul 2020 08:38:47: #1 tag size is determined as 78 bps INFO @ Tue, 14 Jul 2020 08:38:47: #1 tag size = 78 INFO @ Tue, 14 Jul 2020 08:38:47: #1 total tags in treatment: 20077031 INFO @ Tue, 14 Jul 2020 08:38:47: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 08:38:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 08:38:47: #1 tags after filtering in treatment: 18625209 INFO @ Tue, 14 Jul 2020 08:38:47: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 14 Jul 2020 08:38:47: #1 finished! INFO @ Tue, 14 Jul 2020 08:38:47: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 08:38:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 08:38:47: 39000000 INFO @ Tue, 14 Jul 2020 08:38:48: #2 number of paired peaks: 136 WARNING @ Tue, 14 Jul 2020 08:38:48: Fewer paired peaks (136) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 136 pairs to build model! INFO @ Tue, 14 Jul 2020 08:38:48: start model_add_line... INFO @ Tue, 14 Jul 2020 08:38:48: start X-correlation... INFO @ Tue, 14 Jul 2020 08:38:48: end of X-cor INFO @ Tue, 14 Jul 2020 08:38:48: #2 finished! INFO @ Tue, 14 Jul 2020 08:38:48: #2 predicted fragment length is 114 bps INFO @ Tue, 14 Jul 2020 08:38:48: #2 alternative fragment length(s) may be 1,21,98,114,149,168,189,216,266,348,381,488,520,537,550,571,595 bps INFO @ Tue, 14 Jul 2020 08:38:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.05_model.r WARNING @ Tue, 14 Jul 2020 08:38:48: #2 Since the d (114) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 14 Jul 2020 08:38:48: #2 You may need to consider one of the other alternative d(s): 1,21,98,114,149,168,189,216,266,348,381,488,520,537,550,571,595 WARNING @ Tue, 14 Jul 2020 08:38:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 14 Jul 2020 08:38:48: #3 Call peaks... INFO @ Tue, 14 Jul 2020 08:38:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 08:38:51: 35000000 INFO @ Tue, 14 Jul 2020 08:38:56: 40000000 INFO @ Tue, 14 Jul 2020 08:38:59: 36000000 INFO @ Tue, 14 Jul 2020 08:39:05: 41000000 INFO @ Tue, 14 Jul 2020 08:39:07: 37000000 INFO @ Tue, 14 Jul 2020 08:39:08: #1 tag size is determined as 78 bps INFO @ Tue, 14 Jul 2020 08:39:08: #1 tag size = 78 INFO @ Tue, 14 Jul 2020 08:39:08: #1 total tags in treatment: 20077031 INFO @ Tue, 14 Jul 2020 08:39:08: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 08:39:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 08:39:08: #1 tags after filtering in treatment: 18625209 INFO @ Tue, 14 Jul 2020 08:39:08: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 14 Jul 2020 08:39:08: #1 finished! INFO @ Tue, 14 Jul 2020 08:39:08: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 08:39:08: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 08:39:09: #2 number of paired peaks: 136 WARNING @ Tue, 14 Jul 2020 08:39:09: Fewer paired peaks (136) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 136 pairs to build model! INFO @ Tue, 14 Jul 2020 08:39:09: start model_add_line... INFO @ Tue, 14 Jul 2020 08:39:09: start X-correlation... INFO @ Tue, 14 Jul 2020 08:39:09: end of X-cor INFO @ Tue, 14 Jul 2020 08:39:09: #2 finished! INFO @ Tue, 14 Jul 2020 08:39:09: #2 predicted fragment length is 114 bps INFO @ Tue, 14 Jul 2020 08:39:09: #2 alternative fragment length(s) may be 1,21,98,114,149,168,189,216,266,348,381,488,520,537,550,571,595 bps INFO @ Tue, 14 Jul 2020 08:39:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.10_model.r WARNING @ Tue, 14 Jul 2020 08:39:09: #2 Since the d (114) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 14 Jul 2020 08:39:09: #2 You may need to consider one of the other alternative d(s): 1,21,98,114,149,168,189,216,266,348,381,488,520,537,550,571,595 WARNING @ Tue, 14 Jul 2020 08:39:09: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 14 Jul 2020 08:39:09: #3 Call peaks... INFO @ Tue, 14 Jul 2020 08:39:09: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 08:39:15: 38000000 INFO @ Tue, 14 Jul 2020 08:39:22: 39000000 INFO @ Tue, 14 Jul 2020 08:39:23: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 08:39:30: 40000000 INFO @ Tue, 14 Jul 2020 08:39:38: 41000000 INFO @ Tue, 14 Jul 2020 08:39:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.05_peaks.xls INFO @ Tue, 14 Jul 2020 08:39:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.05_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 08:39:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.05_summits.bed INFO @ Tue, 14 Jul 2020 08:39:39: Done! pass1 - making usageList (14 chroms): 0 millis pass2 - checking and writing primary data (478 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 08:39:41: #1 tag size is determined as 78 bps INFO @ Tue, 14 Jul 2020 08:39:41: #1 tag size = 78 INFO @ Tue, 14 Jul 2020 08:39:41: #1 total tags in treatment: 20077031 INFO @ Tue, 14 Jul 2020 08:39:41: #1 user defined the maximum tags... INFO @ Tue, 14 Jul 2020 08:39:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 14 Jul 2020 08:39:41: #1 tags after filtering in treatment: 18625209 INFO @ Tue, 14 Jul 2020 08:39:41: #1 Redundant rate of treatment: 0.07 INFO @ Tue, 14 Jul 2020 08:39:41: #1 finished! INFO @ Tue, 14 Jul 2020 08:39:41: #2 Build Peak Model... INFO @ Tue, 14 Jul 2020 08:39:41: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 14 Jul 2020 08:39:42: #2 number of paired peaks: 136 WARNING @ Tue, 14 Jul 2020 08:39:42: Fewer paired peaks (136) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 136 pairs to build model! INFO @ Tue, 14 Jul 2020 08:39:42: start model_add_line... INFO @ Tue, 14 Jul 2020 08:39:42: start X-correlation... INFO @ Tue, 14 Jul 2020 08:39:42: end of X-cor INFO @ Tue, 14 Jul 2020 08:39:42: #2 finished! INFO @ Tue, 14 Jul 2020 08:39:42: #2 predicted fragment length is 114 bps INFO @ Tue, 14 Jul 2020 08:39:42: #2 alternative fragment length(s) may be 1,21,98,114,149,168,189,216,266,348,381,488,520,537,550,571,595 bps INFO @ Tue, 14 Jul 2020 08:39:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.20_model.r WARNING @ Tue, 14 Jul 2020 08:39:42: #2 Since the d (114) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 14 Jul 2020 08:39:42: #2 You may need to consider one of the other alternative d(s): 1,21,98,114,149,168,189,216,266,348,381,488,520,537,550,571,595 WARNING @ Tue, 14 Jul 2020 08:39:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 14 Jul 2020 08:39:42: #3 Call peaks... INFO @ Tue, 14 Jul 2020 08:39:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 14 Jul 2020 08:39:43: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 08:40:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.10_peaks.xls INFO @ Tue, 14 Jul 2020 08:40:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.10_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 08:40:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.10_summits.bed INFO @ Tue, 14 Jul 2020 08:40:00: Done! pass1 - making usageList (12 chroms): 0 millis pass2 - checking and writing primary data (212 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Tue, 14 Jul 2020 08:40:15: #3 Call peaks for each chromosome... INFO @ Tue, 14 Jul 2020 08:40:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.20_peaks.xls INFO @ Tue, 14 Jul 2020 08:40:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.20_peaks.narrowPeak INFO @ Tue, 14 Jul 2020 08:40:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7224581/SRX7224581.20_summits.bed INFO @ Tue, 14 Jul 2020 08:40:31: Done! pass1 - making usageList (8 chroms): 0 millis pass2 - checking and writing primary data (59 records, 4 fields): 1 millis CompletedMACS2peakCalling