Job ID = 12265483 SRX = SRX7192199 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 16975744 spots for SRR10503245/SRR10503245.sra Written 16975744 spots for SRR10503245/SRR10503245.sra Read 16531802 spots for SRR10503246/SRR10503246.sra Written 16531802 spots for SRR10503246/SRR10503246.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265749 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:35:30 33507546 reads; of these: 33507546 (100.00%) were paired; of these: 3833605 (11.44%) aligned concordantly 0 times 26219054 (78.25%) aligned concordantly exactly 1 time 3454887 (10.31%) aligned concordantly >1 times ---- 3833605 pairs aligned concordantly 0 times; of these: 1279181 (33.37%) aligned discordantly 1 time ---- 2554424 pairs aligned 0 times concordantly or discordantly; of these: 5108848 mates make up the pairs; of these: 3749219 (73.39%) aligned 0 times 996693 (19.51%) aligned exactly 1 time 362936 (7.10%) aligned >1 times 94.41% overall alignment rate Time searching: 00:35:30 Overall time: 00:35:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4284399 / 30770931 = 0.1392 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:11:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:11:09: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:11:09: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:11:15: 1000000 INFO @ Sat, 03 Apr 2021 08:11:21: 2000000 INFO @ Sat, 03 Apr 2021 08:11:27: 3000000 INFO @ Sat, 03 Apr 2021 08:11:33: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:11:39: 5000000 INFO @ Sat, 03 Apr 2021 08:11:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:11:40: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:11:40: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:11:45: 6000000 INFO @ Sat, 03 Apr 2021 08:11:46: 1000000 INFO @ Sat, 03 Apr 2021 08:11:51: 7000000 INFO @ Sat, 03 Apr 2021 08:11:51: 2000000 INFO @ Sat, 03 Apr 2021 08:11:57: 8000000 INFO @ Sat, 03 Apr 2021 08:11:57: 3000000 INFO @ Sat, 03 Apr 2021 08:12:03: 9000000 INFO @ Sat, 03 Apr 2021 08:12:03: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:12:09: 5000000 INFO @ Sat, 03 Apr 2021 08:12:09: 10000000 INFO @ Sat, 03 Apr 2021 08:12:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:12:10: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:12:10: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:12:15: 6000000 INFO @ Sat, 03 Apr 2021 08:12:15: 11000000 INFO @ Sat, 03 Apr 2021 08:12:16: 1000000 INFO @ Sat, 03 Apr 2021 08:12:20: 7000000 INFO @ Sat, 03 Apr 2021 08:12:21: 12000000 INFO @ Sat, 03 Apr 2021 08:12:22: 2000000 INFO @ Sat, 03 Apr 2021 08:12:26: 8000000 INFO @ Sat, 03 Apr 2021 08:12:27: 13000000 INFO @ Sat, 03 Apr 2021 08:12:28: 3000000 INFO @ Sat, 03 Apr 2021 08:12:32: 9000000 INFO @ Sat, 03 Apr 2021 08:12:33: 14000000 INFO @ Sat, 03 Apr 2021 08:12:34: 4000000 INFO @ Sat, 03 Apr 2021 08:12:38: 10000000 INFO @ Sat, 03 Apr 2021 08:12:39: 15000000 INFO @ Sat, 03 Apr 2021 08:12:40: 5000000 INFO @ Sat, 03 Apr 2021 08:12:44: 11000000 INFO @ Sat, 03 Apr 2021 08:12:45: 16000000 INFO @ Sat, 03 Apr 2021 08:12:46: 6000000 INFO @ Sat, 03 Apr 2021 08:12:50: 12000000 INFO @ Sat, 03 Apr 2021 08:12:51: 17000000 INFO @ Sat, 03 Apr 2021 08:12:52: 7000000 INFO @ Sat, 03 Apr 2021 08:12:55: 13000000 INFO @ Sat, 03 Apr 2021 08:12:57: 18000000 INFO @ Sat, 03 Apr 2021 08:12:58: 8000000 INFO @ Sat, 03 Apr 2021 08:13:01: 14000000 INFO @ Sat, 03 Apr 2021 08:13:03: 9000000 INFO @ Sat, 03 Apr 2021 08:13:03: 19000000 INFO @ Sat, 03 Apr 2021 08:13:07: 15000000 INFO @ Sat, 03 Apr 2021 08:13:09: 10000000 INFO @ Sat, 03 Apr 2021 08:13:09: 20000000 INFO @ Sat, 03 Apr 2021 08:13:13: 16000000 INFO @ Sat, 03 Apr 2021 08:13:15: 11000000 INFO @ Sat, 03 Apr 2021 08:13:15: 21000000 INFO @ Sat, 03 Apr 2021 08:13:19: 17000000 INFO @ Sat, 03 Apr 2021 08:13:21: 12000000 INFO @ Sat, 03 Apr 2021 08:13:21: 22000000 INFO @ Sat, 03 Apr 2021 08:13:25: 18000000 INFO @ Sat, 03 Apr 2021 08:13:27: 13000000 INFO @ Sat, 03 Apr 2021 08:13:27: 23000000 INFO @ Sat, 03 Apr 2021 08:13:31: 19000000 INFO @ Sat, 03 Apr 2021 08:13:33: 14000000 INFO @ Sat, 03 Apr 2021 08:13:33: 24000000 INFO @ Sat, 03 Apr 2021 08:13:37: 20000000 INFO @ Sat, 03 Apr 2021 08:13:39: 15000000 INFO @ Sat, 03 Apr 2021 08:13:39: 25000000 INFO @ Sat, 03 Apr 2021 08:13:42: 21000000 INFO @ Sat, 03 Apr 2021 08:13:45: 16000000 INFO @ Sat, 03 Apr 2021 08:13:46: 26000000 INFO @ Sat, 03 Apr 2021 08:13:48: 22000000 INFO @ Sat, 03 Apr 2021 08:13:51: 17000000 INFO @ Sat, 03 Apr 2021 08:13:52: 27000000 INFO @ Sat, 03 Apr 2021 08:13:54: 23000000 INFO @ Sat, 03 Apr 2021 08:13:56: 18000000 INFO @ Sat, 03 Apr 2021 08:13:58: 28000000 INFO @ Sat, 03 Apr 2021 08:14:00: 24000000 INFO @ Sat, 03 Apr 2021 08:14:02: 19000000 INFO @ Sat, 03 Apr 2021 08:14:04: 29000000 INFO @ Sat, 03 Apr 2021 08:14:06: 25000000 INFO @ Sat, 03 Apr 2021 08:14:08: 20000000 INFO @ Sat, 03 Apr 2021 08:14:10: 30000000 INFO @ Sat, 03 Apr 2021 08:14:12: 26000000 INFO @ Sat, 03 Apr 2021 08:14:14: 21000000 INFO @ Sat, 03 Apr 2021 08:14:16: 31000000 INFO @ Sat, 03 Apr 2021 08:14:18: 27000000 INFO @ Sat, 03 Apr 2021 08:14:20: 22000000 INFO @ Sat, 03 Apr 2021 08:14:22: 32000000 INFO @ Sat, 03 Apr 2021 08:14:24: 28000000 INFO @ Sat, 03 Apr 2021 08:14:25: 23000000 INFO @ Sat, 03 Apr 2021 08:14:28: 33000000 INFO @ Sat, 03 Apr 2021 08:14:30: 29000000 INFO @ Sat, 03 Apr 2021 08:14:31: 24000000 INFO @ Sat, 03 Apr 2021 08:14:34: 34000000 INFO @ Sat, 03 Apr 2021 08:14:36: 30000000 INFO @ Sat, 03 Apr 2021 08:14:37: 25000000 INFO @ Sat, 03 Apr 2021 08:14:40: 35000000 INFO @ Sat, 03 Apr 2021 08:14:42: 31000000 INFO @ Sat, 03 Apr 2021 08:14:43: 26000000 INFO @ Sat, 03 Apr 2021 08:14:47: 36000000 INFO @ Sat, 03 Apr 2021 08:14:48: 32000000 INFO @ Sat, 03 Apr 2021 08:14:49: 27000000 INFO @ Sat, 03 Apr 2021 08:14:53: 37000000 INFO @ Sat, 03 Apr 2021 08:14:53: 33000000 INFO @ Sat, 03 Apr 2021 08:14:55: 28000000 INFO @ Sat, 03 Apr 2021 08:14:59: 38000000 INFO @ Sat, 03 Apr 2021 08:14:59: 34000000 INFO @ Sat, 03 Apr 2021 08:15:01: 29000000 INFO @ Sat, 03 Apr 2021 08:15:05: 39000000 INFO @ Sat, 03 Apr 2021 08:15:05: 35000000 INFO @ Sat, 03 Apr 2021 08:15:06: 30000000 INFO @ Sat, 03 Apr 2021 08:15:11: 40000000 INFO @ Sat, 03 Apr 2021 08:15:11: 36000000 INFO @ Sat, 03 Apr 2021 08:15:12: 31000000 INFO @ Sat, 03 Apr 2021 08:15:17: 41000000 INFO @ Sat, 03 Apr 2021 08:15:17: 37000000 INFO @ Sat, 03 Apr 2021 08:15:18: 32000000 INFO @ Sat, 03 Apr 2021 08:15:23: 42000000 INFO @ Sat, 03 Apr 2021 08:15:23: 38000000 INFO @ Sat, 03 Apr 2021 08:15:24: 33000000 INFO @ Sat, 03 Apr 2021 08:15:29: 43000000 INFO @ Sat, 03 Apr 2021 08:15:29: 39000000 INFO @ Sat, 03 Apr 2021 08:15:30: 34000000 INFO @ Sat, 03 Apr 2021 08:15:35: 44000000 INFO @ Sat, 03 Apr 2021 08:15:35: 40000000 INFO @ Sat, 03 Apr 2021 08:15:36: 35000000 INFO @ Sat, 03 Apr 2021 08:15:41: 41000000 INFO @ Sat, 03 Apr 2021 08:15:41: 45000000 INFO @ Sat, 03 Apr 2021 08:15:42: 36000000 INFO @ Sat, 03 Apr 2021 08:15:46: 42000000 INFO @ Sat, 03 Apr 2021 08:15:47: 46000000 INFO @ Sat, 03 Apr 2021 08:15:48: 37000000 INFO @ Sat, 03 Apr 2021 08:15:52: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:15:53: 47000000 INFO @ Sat, 03 Apr 2021 08:15:54: 38000000 INFO @ Sat, 03 Apr 2021 08:15:58: 44000000 INFO @ Sat, 03 Apr 2021 08:15:59: 48000000 INFO @ Sat, 03 Apr 2021 08:16:00: 39000000 INFO @ Sat, 03 Apr 2021 08:16:04: 45000000 INFO @ Sat, 03 Apr 2021 08:16:05: 40000000 INFO @ Sat, 03 Apr 2021 08:16:05: 49000000 INFO @ Sat, 03 Apr 2021 08:16:09: 46000000 INFO @ Sat, 03 Apr 2021 08:16:11: 41000000 INFO @ Sat, 03 Apr 2021 08:16:12: 50000000 INFO @ Sat, 03 Apr 2021 08:16:15: 47000000 INFO @ Sat, 03 Apr 2021 08:16:17: 42000000 INFO @ Sat, 03 Apr 2021 08:16:18: 51000000 INFO @ Sat, 03 Apr 2021 08:16:21: 48000000 INFO @ Sat, 03 Apr 2021 08:16:22: 43000000 INFO @ Sat, 03 Apr 2021 08:16:24: 52000000 INFO @ Sat, 03 Apr 2021 08:16:27: 49000000 INFO @ Sat, 03 Apr 2021 08:16:28: 44000000 INFO @ Sat, 03 Apr 2021 08:16:30: 53000000 INFO @ Sat, 03 Apr 2021 08:16:33: 50000000 INFO @ Sat, 03 Apr 2021 08:16:34: 45000000 INFO @ Sat, 03 Apr 2021 08:16:36: 54000000 INFO @ Sat, 03 Apr 2021 08:16:39: 51000000 INFO @ Sat, 03 Apr 2021 08:16:39: 46000000 INFO @ Sat, 03 Apr 2021 08:16:41: #1 tag size is determined as 51 bps INFO @ Sat, 03 Apr 2021 08:16:41: #1 tag size = 51 INFO @ Sat, 03 Apr 2021 08:16:41: #1 total tags in treatment: 25525156 INFO @ Sat, 03 Apr 2021 08:16:41: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:16:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:16:42: #1 tags after filtering in treatment: 16438017 INFO @ Sat, 03 Apr 2021 08:16:42: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 08:16:42: #1 finished! INFO @ Sat, 03 Apr 2021 08:16:42: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:16:42: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:16:43: #2 number of paired peaks: 1212 INFO @ Sat, 03 Apr 2021 08:16:43: start model_add_line... INFO @ Sat, 03 Apr 2021 08:16:43: start X-correlation... INFO @ Sat, 03 Apr 2021 08:16:43: end of X-cor INFO @ Sat, 03 Apr 2021 08:16:43: #2 finished! INFO @ Sat, 03 Apr 2021 08:16:43: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:16:43: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 08:16:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.05_model.r WARNING @ Sat, 03 Apr 2021 08:16:43: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:16:43: #2 You may need to consider one of the other alternative d(s): 86 WARNING @ Sat, 03 Apr 2021 08:16:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:16:43: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:16:43: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:16:45: 52000000 INFO @ Sat, 03 Apr 2021 08:16:45: 47000000 INFO @ Sat, 03 Apr 2021 08:16:51: 48000000 INFO @ Sat, 03 Apr 2021 08:16:51: 53000000 INFO @ Sat, 03 Apr 2021 08:16:56: 49000000 INFO @ Sat, 03 Apr 2021 08:16:58: 54000000 INFO @ Sat, 03 Apr 2021 08:17:02: #1 tag size is determined as 51 bps INFO @ Sat, 03 Apr 2021 08:17:02: #1 tag size = 51 INFO @ Sat, 03 Apr 2021 08:17:02: #1 total tags in treatment: 25525156 INFO @ Sat, 03 Apr 2021 08:17:02: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:17:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:17:02: 50000000 INFO @ Sat, 03 Apr 2021 08:17:03: #1 tags after filtering in treatment: 16438017 INFO @ Sat, 03 Apr 2021 08:17:03: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 08:17:03: #1 finished! INFO @ Sat, 03 Apr 2021 08:17:03: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:17:03: #2 looking for paired plus/minus strand peaks... BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:17:04: #2 number of paired peaks: 1212 INFO @ Sat, 03 Apr 2021 08:17:04: start model_add_line... INFO @ Sat, 03 Apr 2021 08:17:04: start X-correlation... INFO @ Sat, 03 Apr 2021 08:17:04: end of X-cor INFO @ Sat, 03 Apr 2021 08:17:04: #2 finished! INFO @ Sat, 03 Apr 2021 08:17:04: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:17:04: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 08:17:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.10_model.r WARNING @ Sat, 03 Apr 2021 08:17:04: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:17:04: #2 You may need to consider one of the other alternative d(s): 86 WARNING @ Sat, 03 Apr 2021 08:17:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:17:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:17:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:17:08: 51000000 INFO @ Sat, 03 Apr 2021 08:17:13: 52000000 INFO @ Sat, 03 Apr 2021 08:17:19: 53000000 INFO @ Sat, 03 Apr 2021 08:17:20: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:17:24: 54000000 INFO @ Sat, 03 Apr 2021 08:17:28: #1 tag size is determined as 51 bps INFO @ Sat, 03 Apr 2021 08:17:28: #1 tag size = 51 INFO @ Sat, 03 Apr 2021 08:17:28: #1 total tags in treatment: 25525156 INFO @ Sat, 03 Apr 2021 08:17:28: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:17:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:17:29: #1 tags after filtering in treatment: 16438017 INFO @ Sat, 03 Apr 2021 08:17:29: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 08:17:29: #1 finished! INFO @ Sat, 03 Apr 2021 08:17:29: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:17:29: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:17:30: #2 number of paired peaks: 1212 INFO @ Sat, 03 Apr 2021 08:17:30: start model_add_line... INFO @ Sat, 03 Apr 2021 08:17:30: start X-correlation... INFO @ Sat, 03 Apr 2021 08:17:30: end of X-cor INFO @ Sat, 03 Apr 2021 08:17:30: #2 finished! INFO @ Sat, 03 Apr 2021 08:17:30: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:17:30: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 08:17:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.20_model.r WARNING @ Sat, 03 Apr 2021 08:17:30: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:17:30: #2 You may need to consider one of the other alternative d(s): 86 WARNING @ Sat, 03 Apr 2021 08:17:30: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:17:30: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:17:30: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:17:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:17:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:17:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.05_summits.bed INFO @ Sat, 03 Apr 2021 08:17:39: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (18323 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:17:44: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:18:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:18:07: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:18:07: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.10_summits.bed INFO @ Sat, 03 Apr 2021 08:18:07: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (11551 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:18:10: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:18:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:18:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:18:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7192199/SRX7192199.20_summits.bed INFO @ Sat, 03 Apr 2021 08:18:31: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (4376 records, 4 fields): 7 millis CompletedMACS2peakCalling