Job ID = 14168296 SRX = SRX7175265 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 81225684 spots for SRR10485705/SRR10485705.sra Written 81225684 spots for SRR10485705/SRR10485705.sra fastq に変換しました。 bowtie でマッピング中... Your job 14169884 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 03:50:34 81225684 reads; of these: 81225684 (100.00%) were paired; of these: 12390327 (15.25%) aligned concordantly 0 times 47361225 (58.31%) aligned concordantly exactly 1 time 21474132 (26.44%) aligned concordantly >1 times ---- 12390327 pairs aligned concordantly 0 times; of these: 569306 (4.59%) aligned discordantly 1 time ---- 11821021 pairs aligned 0 times concordantly or discordantly; of these: 23642042 mates make up the pairs; of these: 21034436 (88.97%) aligned 0 times 1537033 (6.50%) aligned exactly 1 time 1070573 (4.53%) aligned >1 times 87.05% overall alignment rate Time searching: 03:50:35 Overall time: 03:50:35 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 60 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 31190872 / 69267352 = 0.4503 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 21:40:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 21:40:38: #1 read tag files... INFO @ Fri, 10 Dec 2021 21:40:38: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 21:40:46: 1000000 INFO @ Fri, 10 Dec 2021 21:40:53: 2000000 INFO @ Fri, 10 Dec 2021 21:41:01: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 21:41:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 21:41:08: #1 read tag files... INFO @ Fri, 10 Dec 2021 21:41:08: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 21:41:08: 4000000 INFO @ Fri, 10 Dec 2021 21:41:18: 1000000 INFO @ Fri, 10 Dec 2021 21:41:18: 5000000 INFO @ Fri, 10 Dec 2021 21:41:25: 6000000 INFO @ Fri, 10 Dec 2021 21:41:27: 2000000 INFO @ Fri, 10 Dec 2021 21:41:33: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 21:41:37: 3000000 INFO @ Fri, 10 Dec 2021 21:41:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 21:41:38: #1 read tag files... INFO @ Fri, 10 Dec 2021 21:41:38: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 21:41:41: 8000000 INFO @ Fri, 10 Dec 2021 21:41:47: 4000000 INFO @ Fri, 10 Dec 2021 21:41:48: 1000000 INFO @ Fri, 10 Dec 2021 21:41:50: 9000000 INFO @ Fri, 10 Dec 2021 21:41:57: 5000000 INFO @ Fri, 10 Dec 2021 21:41:58: 2000000 INFO @ Fri, 10 Dec 2021 21:41:58: 10000000 INFO @ Fri, 10 Dec 2021 21:42:07: 6000000 INFO @ Fri, 10 Dec 2021 21:42:07: 11000000 INFO @ Fri, 10 Dec 2021 21:42:09: 3000000 INFO @ Fri, 10 Dec 2021 21:42:15: 12000000 INFO @ Fri, 10 Dec 2021 21:42:16: 7000000 INFO @ Fri, 10 Dec 2021 21:42:19: 4000000 INFO @ Fri, 10 Dec 2021 21:42:24: 13000000 INFO @ Fri, 10 Dec 2021 21:42:27: 8000000 INFO @ Fri, 10 Dec 2021 21:42:29: 5000000 INFO @ Fri, 10 Dec 2021 21:42:32: 14000000 INFO @ Fri, 10 Dec 2021 21:42:37: 9000000 INFO @ Fri, 10 Dec 2021 21:42:39: 6000000 INFO @ Fri, 10 Dec 2021 21:42:41: 15000000 INFO @ Fri, 10 Dec 2021 21:42:48: 10000000 INFO @ Fri, 10 Dec 2021 21:42:49: 16000000 INFO @ Fri, 10 Dec 2021 21:42:49: 7000000 INFO @ Fri, 10 Dec 2021 21:42:57: 17000000 INFO @ Fri, 10 Dec 2021 21:42:59: 11000000 INFO @ Fri, 10 Dec 2021 21:43:00: 8000000 INFO @ Fri, 10 Dec 2021 21:43:06: 18000000 INFO @ Fri, 10 Dec 2021 21:43:09: 12000000 INFO @ Fri, 10 Dec 2021 21:43:10: 9000000 INFO @ Fri, 10 Dec 2021 21:43:14: 19000000 INFO @ Fri, 10 Dec 2021 21:43:19: 13000000 INFO @ Fri, 10 Dec 2021 21:43:20: 10000000 INFO @ Fri, 10 Dec 2021 21:43:23: 20000000 INFO @ Fri, 10 Dec 2021 21:43:29: 14000000 INFO @ Fri, 10 Dec 2021 21:43:30: 11000000 INFO @ Fri, 10 Dec 2021 21:43:31: 21000000 INFO @ Fri, 10 Dec 2021 21:43:39: 15000000 INFO @ Fri, 10 Dec 2021 21:43:40: 22000000 INFO @ Fri, 10 Dec 2021 21:43:40: 12000000 INFO @ Fri, 10 Dec 2021 21:43:48: 23000000 INFO @ Fri, 10 Dec 2021 21:43:49: 16000000 INFO @ Fri, 10 Dec 2021 21:43:50: 13000000 INFO @ Fri, 10 Dec 2021 21:43:56: 24000000 INFO @ Fri, 10 Dec 2021 21:43:59: 17000000 INFO @ Fri, 10 Dec 2021 21:44:01: 14000000 INFO @ Fri, 10 Dec 2021 21:44:04: 25000000 INFO @ Fri, 10 Dec 2021 21:44:10: 18000000 INFO @ Fri, 10 Dec 2021 21:44:10: 15000000 INFO @ Fri, 10 Dec 2021 21:44:13: 26000000 INFO @ Fri, 10 Dec 2021 21:44:20: 16000000 INFO @ Fri, 10 Dec 2021 21:44:20: 19000000 INFO @ Fri, 10 Dec 2021 21:44:21: 27000000 INFO @ Fri, 10 Dec 2021 21:44:29: 17000000 INFO @ Fri, 10 Dec 2021 21:44:30: 28000000 INFO @ Fri, 10 Dec 2021 21:44:31: 20000000 INFO @ Fri, 10 Dec 2021 21:44:38: 29000000 INFO @ Fri, 10 Dec 2021 21:44:40: 18000000 INFO @ Fri, 10 Dec 2021 21:44:40: 21000000 INFO @ Fri, 10 Dec 2021 21:44:47: 30000000 INFO @ Fri, 10 Dec 2021 21:44:50: 19000000 INFO @ Fri, 10 Dec 2021 21:44:50: 22000000 INFO @ Fri, 10 Dec 2021 21:44:55: 31000000 INFO @ Fri, 10 Dec 2021 21:45:00: 23000000 INFO @ Fri, 10 Dec 2021 21:45:00: 20000000 INFO @ Fri, 10 Dec 2021 21:45:03: 32000000 INFO @ Fri, 10 Dec 2021 21:45:09: 24000000 INFO @ Fri, 10 Dec 2021 21:45:10: 21000000 INFO @ Fri, 10 Dec 2021 21:45:12: 33000000 INFO @ Fri, 10 Dec 2021 21:45:20: 25000000 INFO @ Fri, 10 Dec 2021 21:45:20: 22000000 INFO @ Fri, 10 Dec 2021 21:45:20: 34000000 INFO @ Fri, 10 Dec 2021 21:45:29: 35000000 INFO @ Fri, 10 Dec 2021 21:45:30: 26000000 INFO @ Fri, 10 Dec 2021 21:45:31: 23000000 INFO @ Fri, 10 Dec 2021 21:45:37: 36000000 INFO @ Fri, 10 Dec 2021 21:45:41: 27000000 INFO @ Fri, 10 Dec 2021 21:45:41: 24000000 INFO @ Fri, 10 Dec 2021 21:45:45: 37000000 INFO @ Fri, 10 Dec 2021 21:45:50: 28000000 INFO @ Fri, 10 Dec 2021 21:45:51: 25000000 INFO @ Fri, 10 Dec 2021 21:45:54: 38000000 INFO @ Fri, 10 Dec 2021 21:45:58: 29000000 INFO @ Fri, 10 Dec 2021 21:46:01: 26000000 INFO @ Fri, 10 Dec 2021 21:46:02: 39000000 INFO @ Fri, 10 Dec 2021 21:46:08: 30000000 INFO @ Fri, 10 Dec 2021 21:46:11: 40000000 INFO @ Fri, 10 Dec 2021 21:46:11: 27000000 INFO @ Fri, 10 Dec 2021 21:46:19: 31000000 INFO @ Fri, 10 Dec 2021 21:46:19: 41000000 INFO @ Fri, 10 Dec 2021 21:46:20: 28000000 INFO @ Fri, 10 Dec 2021 21:46:27: 42000000 INFO @ Fri, 10 Dec 2021 21:46:28: 32000000 INFO @ Fri, 10 Dec 2021 21:46:28: 29000000 INFO @ Fri, 10 Dec 2021 21:46:35: 43000000 INFO @ Fri, 10 Dec 2021 21:46:38: 33000000 INFO @ Fri, 10 Dec 2021 21:46:39: 30000000 INFO @ Fri, 10 Dec 2021 21:46:43: 44000000 INFO @ Fri, 10 Dec 2021 21:46:48: 34000000 INFO @ Fri, 10 Dec 2021 21:46:49: 31000000 INFO @ Fri, 10 Dec 2021 21:46:51: 45000000 INFO @ Fri, 10 Dec 2021 21:46:58: 35000000 INFO @ Fri, 10 Dec 2021 21:46:59: 32000000 INFO @ Fri, 10 Dec 2021 21:47:00: 46000000 INFO @ Fri, 10 Dec 2021 21:47:07: 36000000 INFO @ Fri, 10 Dec 2021 21:47:08: 47000000 INFO @ Fri, 10 Dec 2021 21:47:09: 33000000 INFO @ Fri, 10 Dec 2021 21:47:16: 48000000 INFO @ Fri, 10 Dec 2021 21:47:17: 37000000 INFO @ Fri, 10 Dec 2021 21:47:19: 34000000 INFO @ Fri, 10 Dec 2021 21:47:24: 49000000 INFO @ Fri, 10 Dec 2021 21:47:27: 38000000 INFO @ Fri, 10 Dec 2021 21:47:29: 35000000 INFO @ Fri, 10 Dec 2021 21:47:33: 50000000 INFO @ Fri, 10 Dec 2021 21:47:38: 39000000 INFO @ Fri, 10 Dec 2021 21:47:40: 36000000 INFO @ Fri, 10 Dec 2021 21:47:41: 51000000 INFO @ Fri, 10 Dec 2021 21:47:48: 40000000 INFO @ Fri, 10 Dec 2021 21:47:49: 52000000 INFO @ Fri, 10 Dec 2021 21:47:50: 37000000 INFO @ Fri, 10 Dec 2021 21:47:57: 53000000 INFO @ Fri, 10 Dec 2021 21:47:59: 41000000 INFO @ Fri, 10 Dec 2021 21:48:01: 38000000 INFO @ Fri, 10 Dec 2021 21:48:05: 54000000 INFO @ Fri, 10 Dec 2021 21:48:10: 42000000 INFO @ Fri, 10 Dec 2021 21:48:11: 39000000 INFO @ Fri, 10 Dec 2021 21:48:14: 55000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 21:48:20: 43000000 INFO @ Fri, 10 Dec 2021 21:48:21: 40000000 INFO @ Fri, 10 Dec 2021 21:48:22: 56000000 INFO @ Fri, 10 Dec 2021 21:48:30: 57000000 INFO @ Fri, 10 Dec 2021 21:48:30: 44000000 INFO @ Fri, 10 Dec 2021 21:48:32: 41000000 INFO @ Fri, 10 Dec 2021 21:48:38: 58000000 INFO @ Fri, 10 Dec 2021 21:48:41: 45000000 INFO @ Fri, 10 Dec 2021 21:48:42: 42000000 INFO @ Fri, 10 Dec 2021 21:48:46: 59000000 INFO @ Fri, 10 Dec 2021 21:48:49: 46000000 INFO @ Fri, 10 Dec 2021 21:48:52: 43000000 INFO @ Fri, 10 Dec 2021 21:48:54: 60000000 INFO @ Fri, 10 Dec 2021 21:49:00: 47000000 INFO @ Fri, 10 Dec 2021 21:49:02: 61000000 INFO @ Fri, 10 Dec 2021 21:49:03: 44000000 INFO @ Fri, 10 Dec 2021 21:49:10: 48000000 INFO @ Fri, 10 Dec 2021 21:49:11: 62000000 INFO @ Fri, 10 Dec 2021 21:49:13: 45000000 INFO @ Fri, 10 Dec 2021 21:49:19: 63000000 INFO @ Fri, 10 Dec 2021 21:49:20: 49000000 INFO @ Fri, 10 Dec 2021 21:49:21: 46000000 INFO @ Fri, 10 Dec 2021 21:49:28: 64000000 INFO @ Fri, 10 Dec 2021 21:49:30: 47000000 INFO @ Fri, 10 Dec 2021 21:49:30: 50000000 INFO @ Fri, 10 Dec 2021 21:49:36: 65000000 INFO @ Fri, 10 Dec 2021 21:49:39: 48000000 INFO @ Fri, 10 Dec 2021 21:49:40: 51000000 INFO @ Fri, 10 Dec 2021 21:49:44: 66000000 INFO @ Fri, 10 Dec 2021 21:49:49: 49000000 INFO @ Fri, 10 Dec 2021 21:49:51: 52000000 INFO @ Fri, 10 Dec 2021 21:49:52: 67000000 INFO @ Fri, 10 Dec 2021 21:49:58: 50000000 INFO @ Fri, 10 Dec 2021 21:50:01: 68000000 INFO @ Fri, 10 Dec 2021 21:50:01: 53000000 INFO @ Fri, 10 Dec 2021 21:50:08: 51000000 INFO @ Fri, 10 Dec 2021 21:50:09: 69000000 INFO @ Fri, 10 Dec 2021 21:50:12: 54000000 INFO @ Fri, 10 Dec 2021 21:50:18: 52000000 INFO @ Fri, 10 Dec 2021 21:50:18: 70000000 INFO @ Fri, 10 Dec 2021 21:50:22: 55000000 INFO @ Fri, 10 Dec 2021 21:50:26: 71000000 INFO @ Fri, 10 Dec 2021 21:50:27: 53000000 INFO @ Fri, 10 Dec 2021 21:50:32: 56000000 INFO @ Fri, 10 Dec 2021 21:50:34: 72000000 INFO @ Fri, 10 Dec 2021 21:50:37: 54000000 INFO @ Fri, 10 Dec 2021 21:50:42: 57000000 INFO @ Fri, 10 Dec 2021 21:50:43: 73000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 21:50:47: 55000000 INFO @ Fri, 10 Dec 2021 21:50:51: 74000000 INFO @ Fri, 10 Dec 2021 21:50:53: 58000000 INFO @ Fri, 10 Dec 2021 21:50:56: 56000000 INFO @ Fri, 10 Dec 2021 21:51:00: 75000000 INFO @ Fri, 10 Dec 2021 21:51:03: 59000000 INFO @ Fri, 10 Dec 2021 21:51:06: 57000000 INFO @ Fri, 10 Dec 2021 21:51:08: 76000000 INFO @ Fri, 10 Dec 2021 21:51:13: 60000000 INFO @ Fri, 10 Dec 2021 21:51:16: 58000000 INFO @ Fri, 10 Dec 2021 21:51:17: 77000000 INFO @ Fri, 10 Dec 2021 21:51:24: 61000000 INFO @ Fri, 10 Dec 2021 21:51:25: 78000000 INFO @ Fri, 10 Dec 2021 21:51:26: 59000000 INFO @ Fri, 10 Dec 2021 21:51:33: 79000000 INFO @ Fri, 10 Dec 2021 21:51:34: 62000000 INFO @ Fri, 10 Dec 2021 21:51:34: #1 tag size is determined as 50 bps INFO @ Fri, 10 Dec 2021 21:51:34: #1 tag size = 50 INFO @ Fri, 10 Dec 2021 21:51:34: #1 total tags in treatment: 37798399 INFO @ Fri, 10 Dec 2021 21:51:34: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 21:51:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 21:51:35: #1 tags after filtering in treatment: 31856962 INFO @ Fri, 10 Dec 2021 21:51:35: #1 Redundant rate of treatment: 0.16 INFO @ Fri, 10 Dec 2021 21:51:35: #1 finished! INFO @ Fri, 10 Dec 2021 21:51:35: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 21:51:35: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 21:51:36: 60000000 INFO @ Fri, 10 Dec 2021 21:51:38: #2 number of paired peaks: 354 WARNING @ Fri, 10 Dec 2021 21:51:38: Fewer paired peaks (354) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 354 pairs to build model! INFO @ Fri, 10 Dec 2021 21:51:38: start model_add_line... INFO @ Fri, 10 Dec 2021 21:51:38: start X-correlation... INFO @ Fri, 10 Dec 2021 21:51:38: end of X-cor INFO @ Fri, 10 Dec 2021 21:51:38: #2 finished! INFO @ Fri, 10 Dec 2021 21:51:38: #2 predicted fragment length is 135 bps INFO @ Fri, 10 Dec 2021 21:51:38: #2 alternative fragment length(s) may be 135 bps INFO @ Fri, 10 Dec 2021 21:51:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.05_model.r INFO @ Fri, 10 Dec 2021 21:51:38: #3 Call peaks... INFO @ Fri, 10 Dec 2021 21:51:38: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 21:51:44: 63000000 INFO @ Fri, 10 Dec 2021 21:51:46: 61000000 INFO @ Fri, 10 Dec 2021 21:51:54: 64000000 INFO @ Fri, 10 Dec 2021 21:51:56: 62000000 INFO @ Fri, 10 Dec 2021 21:52:04: 65000000 INFO @ Fri, 10 Dec 2021 21:52:06: 63000000 INFO @ Fri, 10 Dec 2021 21:52:15: 66000000 INFO @ Fri, 10 Dec 2021 21:52:16: 64000000 INFO @ Fri, 10 Dec 2021 21:52:25: 67000000 INFO @ Fri, 10 Dec 2021 21:52:26: 65000000 INFO @ Fri, 10 Dec 2021 21:52:35: 68000000 INFO @ Fri, 10 Dec 2021 21:52:37: 66000000 INFO @ Fri, 10 Dec 2021 21:52:46: 69000000 INFO @ Fri, 10 Dec 2021 21:52:46: 67000000 INFO @ Fri, 10 Dec 2021 21:52:56: 68000000 INFO @ Fri, 10 Dec 2021 21:52:56: 70000000 INFO @ Fri, 10 Dec 2021 21:52:57: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 21:53:06: 69000000 INFO @ Fri, 10 Dec 2021 21:53:07: 71000000 INFO @ Fri, 10 Dec 2021 21:53:17: 70000000 INFO @ Fri, 10 Dec 2021 21:53:17: 72000000 INFO @ Fri, 10 Dec 2021 21:53:27: 73000000 INFO @ Fri, 10 Dec 2021 21:53:27: 71000000 INFO @ Fri, 10 Dec 2021 21:53:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.05_peaks.xls INFO @ Fri, 10 Dec 2021 21:53:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 21:53:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.05_summits.bed INFO @ Fri, 10 Dec 2021 21:53:35: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (13127 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 21:53:37: 74000000 INFO @ Fri, 10 Dec 2021 21:53:38: 72000000 INFO @ Fri, 10 Dec 2021 21:53:47: 75000000 INFO @ Fri, 10 Dec 2021 21:53:48: 73000000 INFO @ Fri, 10 Dec 2021 21:53:57: 76000000 INFO @ Fri, 10 Dec 2021 21:53:59: 74000000 INFO @ Fri, 10 Dec 2021 21:54:07: 77000000 INFO @ Fri, 10 Dec 2021 21:54:09: 75000000 INFO @ Fri, 10 Dec 2021 21:54:17: 78000000 INFO @ Fri, 10 Dec 2021 21:54:19: 76000000 INFO @ Fri, 10 Dec 2021 21:54:28: 79000000 INFO @ Fri, 10 Dec 2021 21:54:28: #1 tag size is determined as 50 bps INFO @ Fri, 10 Dec 2021 21:54:28: #1 tag size = 50 INFO @ Fri, 10 Dec 2021 21:54:28: #1 total tags in treatment: 37798399 INFO @ Fri, 10 Dec 2021 21:54:28: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 21:54:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 21:54:29: 77000000 INFO @ Fri, 10 Dec 2021 21:54:29: #1 tags after filtering in treatment: 31856962 INFO @ Fri, 10 Dec 2021 21:54:29: #1 Redundant rate of treatment: 0.16 INFO @ Fri, 10 Dec 2021 21:54:29: #1 finished! INFO @ Fri, 10 Dec 2021 21:54:29: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 21:54:29: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 21:54:32: #2 number of paired peaks: 354 WARNING @ Fri, 10 Dec 2021 21:54:32: Fewer paired peaks (354) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 354 pairs to build model! INFO @ Fri, 10 Dec 2021 21:54:32: start model_add_line... INFO @ Fri, 10 Dec 2021 21:54:32: start X-correlation... INFO @ Fri, 10 Dec 2021 21:54:32: end of X-cor INFO @ Fri, 10 Dec 2021 21:54:32: #2 finished! INFO @ Fri, 10 Dec 2021 21:54:32: #2 predicted fragment length is 135 bps INFO @ Fri, 10 Dec 2021 21:54:32: #2 alternative fragment length(s) may be 135 bps INFO @ Fri, 10 Dec 2021 21:54:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.10_model.r INFO @ Fri, 10 Dec 2021 21:54:32: #3 Call peaks... INFO @ Fri, 10 Dec 2021 21:54:32: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 21:54:38: 78000000 INFO @ Fri, 10 Dec 2021 21:54:47: 79000000 INFO @ Fri, 10 Dec 2021 21:54:47: #1 tag size is determined as 50 bps INFO @ Fri, 10 Dec 2021 21:54:47: #1 tag size = 50 INFO @ Fri, 10 Dec 2021 21:54:47: #1 total tags in treatment: 37798399 INFO @ Fri, 10 Dec 2021 21:54:47: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 21:54:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 21:54:48: #1 tags after filtering in treatment: 31856962 INFO @ Fri, 10 Dec 2021 21:54:48: #1 Redundant rate of treatment: 0.16 INFO @ Fri, 10 Dec 2021 21:54:48: #1 finished! INFO @ Fri, 10 Dec 2021 21:54:48: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 21:54:48: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 21:54:51: #2 number of paired peaks: 354 WARNING @ Fri, 10 Dec 2021 21:54:51: Fewer paired peaks (354) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 354 pairs to build model! INFO @ Fri, 10 Dec 2021 21:54:51: start model_add_line... INFO @ Fri, 10 Dec 2021 21:54:51: start X-correlation... INFO @ Fri, 10 Dec 2021 21:54:51: end of X-cor INFO @ Fri, 10 Dec 2021 21:54:51: #2 finished! INFO @ Fri, 10 Dec 2021 21:54:51: #2 predicted fragment length is 135 bps INFO @ Fri, 10 Dec 2021 21:54:51: #2 alternative fragment length(s) may be 135 bps INFO @ Fri, 10 Dec 2021 21:54:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.20_model.r INFO @ Fri, 10 Dec 2021 21:54:51: #3 Call peaks... INFO @ Fri, 10 Dec 2021 21:54:51: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 21:55:51: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 21:56:10: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 21:56:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.10_peaks.xls INFO @ Fri, 10 Dec 2021 21:56:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 21:56:28: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.10_summits.bed INFO @ Fri, 10 Dec 2021 21:56:28: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (7658 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 21:56:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.20_peaks.xls INFO @ Fri, 10 Dec 2021 21:56:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 21:56:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7175265/SRX7175265.20_summits.bed INFO @ Fri, 10 Dec 2021 21:56:47: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (3395 records, 4 fields): 9 millis CompletedMACS2peakCalling