Job ID = 12265393 SRX = SRX6817546 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 70564124 spots for SRR10084537/SRR10084537.sra Written 70564124 spots for SRR10084537/SRR10084537.sra fastq に変換しました。 bowtie でマッピング中... Your job 12267260 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:36:51 70564124 reads; of these: 70564124 (100.00%) were paired; of these: 36685151 (51.99%) aligned concordantly 0 times 24650817 (34.93%) aligned concordantly exactly 1 time 9228156 (13.08%) aligned concordantly >1 times ---- 36685151 pairs aligned concordantly 0 times; of these: 4891765 (13.33%) aligned discordantly 1 time ---- 31793386 pairs aligned 0 times concordantly or discordantly; of these: 63586772 mates make up the pairs; of these: 56094458 (88.22%) aligned 0 times 1428135 (2.25%) aligned exactly 1 time 6064179 (9.54%) aligned >1 times 60.25% overall alignment rate Time searching: 02:36:51 Overall time: 02:36:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 12286709 / 38352762 = 0.3204 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:21:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:21:25: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:21:25: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:21:36: 1000000 INFO @ Sat, 03 Apr 2021 10:21:48: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:21:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:21:55: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:21:55: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:22:00: 3000000 INFO @ Sat, 03 Apr 2021 10:22:09: 1000000 INFO @ Sat, 03 Apr 2021 10:22:13: 4000000 INFO @ Sat, 03 Apr 2021 10:22:23: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:22:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:22:25: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:22:25: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:22:27: 5000000 INFO @ Sat, 03 Apr 2021 10:22:37: 3000000 INFO @ Sat, 03 Apr 2021 10:22:38: 1000000 INFO @ Sat, 03 Apr 2021 10:22:40: 6000000 INFO @ Sat, 03 Apr 2021 10:22:50: 2000000 INFO @ Sat, 03 Apr 2021 10:22:51: 4000000 INFO @ Sat, 03 Apr 2021 10:22:54: 7000000 INFO @ Sat, 03 Apr 2021 10:23:03: 3000000 INFO @ Sat, 03 Apr 2021 10:23:04: 5000000 INFO @ Sat, 03 Apr 2021 10:23:08: 8000000 INFO @ Sat, 03 Apr 2021 10:23:15: 4000000 INFO @ Sat, 03 Apr 2021 10:23:18: 6000000 INFO @ Sat, 03 Apr 2021 10:23:22: 9000000 INFO @ Sat, 03 Apr 2021 10:23:28: 5000000 INFO @ Sat, 03 Apr 2021 10:23:31: 7000000 INFO @ Sat, 03 Apr 2021 10:23:36: 10000000 INFO @ Sat, 03 Apr 2021 10:23:41: 6000000 INFO @ Sat, 03 Apr 2021 10:23:45: 8000000 INFO @ Sat, 03 Apr 2021 10:23:50: 11000000 INFO @ Sat, 03 Apr 2021 10:23:54: 7000000 INFO @ Sat, 03 Apr 2021 10:23:59: 9000000 INFO @ Sat, 03 Apr 2021 10:24:04: 12000000 INFO @ Sat, 03 Apr 2021 10:24:07: 8000000 INFO @ Sat, 03 Apr 2021 10:24:13: 10000000 INFO @ Sat, 03 Apr 2021 10:24:18: 13000000 INFO @ Sat, 03 Apr 2021 10:24:20: 9000000 INFO @ Sat, 03 Apr 2021 10:24:27: 11000000 INFO @ Sat, 03 Apr 2021 10:24:32: 10000000 INFO @ Sat, 03 Apr 2021 10:24:33: 14000000 INFO @ Sat, 03 Apr 2021 10:24:41: 12000000 INFO @ Sat, 03 Apr 2021 10:24:45: 11000000 INFO @ Sat, 03 Apr 2021 10:24:47: 15000000 INFO @ Sat, 03 Apr 2021 10:24:55: 13000000 INFO @ Sat, 03 Apr 2021 10:24:58: 12000000 INFO @ Sat, 03 Apr 2021 10:25:02: 16000000 INFO @ Sat, 03 Apr 2021 10:25:09: 14000000 INFO @ Sat, 03 Apr 2021 10:25:11: 13000000 INFO @ Sat, 03 Apr 2021 10:25:17: 17000000 INFO @ Sat, 03 Apr 2021 10:25:23: 15000000 INFO @ Sat, 03 Apr 2021 10:25:23: 14000000 INFO @ Sat, 03 Apr 2021 10:25:32: 18000000 INFO @ Sat, 03 Apr 2021 10:25:36: 15000000 INFO @ Sat, 03 Apr 2021 10:25:38: 16000000 INFO @ Sat, 03 Apr 2021 10:25:46: 19000000 INFO @ Sat, 03 Apr 2021 10:25:48: 16000000 INFO @ Sat, 03 Apr 2021 10:25:52: 17000000 INFO @ Sat, 03 Apr 2021 10:26:00: 20000000 INFO @ Sat, 03 Apr 2021 10:26:01: 17000000 INFO @ Sat, 03 Apr 2021 10:26:06: 18000000 INFO @ Sat, 03 Apr 2021 10:26:13: 18000000 INFO @ Sat, 03 Apr 2021 10:26:14: 21000000 INFO @ Sat, 03 Apr 2021 10:26:20: 19000000 INFO @ Sat, 03 Apr 2021 10:26:26: 19000000 INFO @ Sat, 03 Apr 2021 10:26:29: 22000000 INFO @ Sat, 03 Apr 2021 10:26:34: 20000000 INFO @ Sat, 03 Apr 2021 10:26:38: 20000000 INFO @ Sat, 03 Apr 2021 10:26:43: 23000000 INFO @ Sat, 03 Apr 2021 10:26:48: 21000000 INFO @ Sat, 03 Apr 2021 10:26:51: 21000000 INFO @ Sat, 03 Apr 2021 10:26:56: 24000000 INFO @ Sat, 03 Apr 2021 10:27:02: 22000000 INFO @ Sat, 03 Apr 2021 10:27:03: 22000000 INFO @ Sat, 03 Apr 2021 10:27:10: 25000000 INFO @ Sat, 03 Apr 2021 10:27:15: 23000000 INFO @ Sat, 03 Apr 2021 10:27:16: 23000000 INFO @ Sat, 03 Apr 2021 10:27:24: 26000000 INFO @ Sat, 03 Apr 2021 10:27:29: 24000000 INFO @ Sat, 03 Apr 2021 10:27:29: 24000000 INFO @ Sat, 03 Apr 2021 10:27:37: 27000000 INFO @ Sat, 03 Apr 2021 10:27:42: 25000000 INFO @ Sat, 03 Apr 2021 10:27:43: 25000000 INFO @ Sat, 03 Apr 2021 10:27:50: 28000000 INFO @ Sat, 03 Apr 2021 10:27:55: 26000000 INFO @ Sat, 03 Apr 2021 10:27:56: 26000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 10:28:04: 29000000 INFO @ Sat, 03 Apr 2021 10:28:08: 27000000 INFO @ Sat, 03 Apr 2021 10:28:09: 27000000 INFO @ Sat, 03 Apr 2021 10:28:17: 30000000 INFO @ Sat, 03 Apr 2021 10:28:22: 28000000 INFO @ Sat, 03 Apr 2021 10:28:22: 28000000 INFO @ Sat, 03 Apr 2021 10:28:31: 31000000 INFO @ Sat, 03 Apr 2021 10:28:35: 29000000 INFO @ Sat, 03 Apr 2021 10:28:36: 29000000 INFO @ Sat, 03 Apr 2021 10:28:45: 32000000 INFO @ Sat, 03 Apr 2021 10:28:48: 30000000 INFO @ Sat, 03 Apr 2021 10:28:49: 30000000 INFO @ Sat, 03 Apr 2021 10:28:58: 33000000 INFO @ Sat, 03 Apr 2021 10:29:01: 31000000 INFO @ Sat, 03 Apr 2021 10:29:02: 31000000 INFO @ Sat, 03 Apr 2021 10:29:12: 34000000 INFO @ Sat, 03 Apr 2021 10:29:15: 32000000 INFO @ Sat, 03 Apr 2021 10:29:15: 32000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 10:29:26: 35000000 INFO @ Sat, 03 Apr 2021 10:29:28: 33000000 INFO @ Sat, 03 Apr 2021 10:29:29: 33000000 INFO @ Sat, 03 Apr 2021 10:29:39: 36000000 INFO @ Sat, 03 Apr 2021 10:29:42: 34000000 INFO @ Sat, 03 Apr 2021 10:29:42: 34000000 INFO @ Sat, 03 Apr 2021 10:29:52: 37000000 INFO @ Sat, 03 Apr 2021 10:29:55: 35000000 INFO @ Sat, 03 Apr 2021 10:29:56: 35000000 INFO @ Sat, 03 Apr 2021 10:30:06: 38000000 INFO @ Sat, 03 Apr 2021 10:30:10: 36000000 INFO @ Sat, 03 Apr 2021 10:30:10: 36000000 INFO @ Sat, 03 Apr 2021 10:30:20: 39000000 INFO @ Sat, 03 Apr 2021 10:30:24: 37000000 INFO @ Sat, 03 Apr 2021 10:30:24: 37000000 INFO @ Sat, 03 Apr 2021 10:30:34: 40000000 INFO @ Sat, 03 Apr 2021 10:30:39: 38000000 INFO @ Sat, 03 Apr 2021 10:30:40: 38000000 INFO @ Sat, 03 Apr 2021 10:30:48: 41000000 INFO @ Sat, 03 Apr 2021 10:30:54: 39000000 INFO @ Sat, 03 Apr 2021 10:30:55: 39000000 INFO @ Sat, 03 Apr 2021 10:31:01: 42000000 INFO @ Sat, 03 Apr 2021 10:31:09: 40000000 INFO @ Sat, 03 Apr 2021 10:31:10: 40000000 INFO @ Sat, 03 Apr 2021 10:31:15: 43000000 INFO @ Sat, 03 Apr 2021 10:31:24: 41000000 INFO @ Sat, 03 Apr 2021 10:31:24: 41000000 INFO @ Sat, 03 Apr 2021 10:31:28: 44000000 INFO @ Sat, 03 Apr 2021 10:31:37: 42000000 INFO @ Sat, 03 Apr 2021 10:31:38: 42000000 INFO @ Sat, 03 Apr 2021 10:31:42: 45000000 INFO @ Sat, 03 Apr 2021 10:31:49: 43000000 INFO @ Sat, 03 Apr 2021 10:31:51: 43000000 INFO @ Sat, 03 Apr 2021 10:31:56: 46000000 INFO @ Sat, 03 Apr 2021 10:32:01: 44000000 INFO @ Sat, 03 Apr 2021 10:32:05: 44000000 INFO @ Sat, 03 Apr 2021 10:32:10: 47000000 INFO @ Sat, 03 Apr 2021 10:32:13: 45000000 INFO @ Sat, 03 Apr 2021 10:32:18: 45000000 INFO @ Sat, 03 Apr 2021 10:32:23: 48000000 INFO @ Sat, 03 Apr 2021 10:32:25: 46000000 INFO @ Sat, 03 Apr 2021 10:32:32: 46000000 INFO @ Sat, 03 Apr 2021 10:32:37: 49000000 INFO @ Sat, 03 Apr 2021 10:32:38: 47000000 INFO @ Sat, 03 Apr 2021 10:32:45: 47000000 INFO @ Sat, 03 Apr 2021 10:32:50: 48000000 INFO @ Sat, 03 Apr 2021 10:32:52: 50000000 INFO @ Sat, 03 Apr 2021 10:32:59: 48000000 INFO @ Sat, 03 Apr 2021 10:33:02: 49000000 INFO @ Sat, 03 Apr 2021 10:33:05: 51000000 INFO @ Sat, 03 Apr 2021 10:33:12: 49000000 INFO @ Sat, 03 Apr 2021 10:33:14: 50000000 INFO @ Sat, 03 Apr 2021 10:33:19: 52000000 INFO @ Sat, 03 Apr 2021 10:33:26: 50000000 INFO @ Sat, 03 Apr 2021 10:33:27: 51000000 INFO @ Sat, 03 Apr 2021 10:33:33: 53000000 INFO @ Sat, 03 Apr 2021 10:33:39: 52000000 INFO @ Sat, 03 Apr 2021 10:33:39: 51000000 INFO @ Sat, 03 Apr 2021 10:33:46: 54000000 INFO @ Sat, 03 Apr 2021 10:33:52: 53000000 INFO @ Sat, 03 Apr 2021 10:33:53: 52000000 INFO @ Sat, 03 Apr 2021 10:34:01: 55000000 INFO @ Sat, 03 Apr 2021 10:34:04: 54000000 INFO @ Sat, 03 Apr 2021 10:34:06: 53000000 INFO @ Sat, 03 Apr 2021 10:34:15: 56000000 INFO @ Sat, 03 Apr 2021 10:34:17: 55000000 INFO @ Sat, 03 Apr 2021 10:34:20: 54000000 INFO @ Sat, 03 Apr 2021 10:34:28: 56000000 INFO @ Sat, 03 Apr 2021 10:34:29: 57000000 INFO @ Sat, 03 Apr 2021 10:34:34: 55000000 INFO @ Sat, 03 Apr 2021 10:34:41: 57000000 INFO @ Sat, 03 Apr 2021 10:34:42: 58000000 INFO @ Sat, 03 Apr 2021 10:34:48: 56000000 INFO @ Sat, 03 Apr 2021 10:34:53: 58000000 INFO @ Sat, 03 Apr 2021 10:34:56: 59000000 INFO @ Sat, 03 Apr 2021 10:35:02: 57000000 INFO @ Sat, 03 Apr 2021 10:35:05: 59000000 INFO @ Sat, 03 Apr 2021 10:35:10: 60000000 INFO @ Sat, 03 Apr 2021 10:35:16: 58000000 INFO @ Sat, 03 Apr 2021 10:35:16: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:35:16: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:35:16: #1 total tags in treatment: 22940092 INFO @ Sat, 03 Apr 2021 10:35:16: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:35:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:35:17: 60000000 INFO @ Sat, 03 Apr 2021 10:35:17: #1 tags after filtering in treatment: 17447249 INFO @ Sat, 03 Apr 2021 10:35:17: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 10:35:17: #1 finished! INFO @ Sat, 03 Apr 2021 10:35:17: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:35:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:35:18: #2 number of paired peaks: 178 WARNING @ Sat, 03 Apr 2021 10:35:18: Fewer paired peaks (178) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 178 pairs to build model! INFO @ Sat, 03 Apr 2021 10:35:18: start model_add_line... INFO @ Sat, 03 Apr 2021 10:35:18: start X-correlation... INFO @ Sat, 03 Apr 2021 10:35:18: end of X-cor INFO @ Sat, 03 Apr 2021 10:35:18: #2 finished! INFO @ Sat, 03 Apr 2021 10:35:18: #2 predicted fragment length is 169 bps INFO @ Sat, 03 Apr 2021 10:35:18: #2 alternative fragment length(s) may be 169 bps INFO @ Sat, 03 Apr 2021 10:35:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.05_model.r WARNING @ Sat, 03 Apr 2021 10:35:18: #2 Since the d (169) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:35:18: #2 You may need to consider one of the other alternative d(s): 169 WARNING @ Sat, 03 Apr 2021 10:35:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:35:18: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:35:18: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:35:22: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:35:22: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:35:22: #1 total tags in treatment: 22940092 INFO @ Sat, 03 Apr 2021 10:35:22: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:35:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:35:23: #1 tags after filtering in treatment: 17447249 INFO @ Sat, 03 Apr 2021 10:35:23: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 10:35:23: #1 finished! INFO @ Sat, 03 Apr 2021 10:35:23: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:35:23: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:35:24: #2 number of paired peaks: 178 WARNING @ Sat, 03 Apr 2021 10:35:24: Fewer paired peaks (178) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 178 pairs to build model! INFO @ Sat, 03 Apr 2021 10:35:24: start model_add_line... INFO @ Sat, 03 Apr 2021 10:35:24: start X-correlation... INFO @ Sat, 03 Apr 2021 10:35:24: end of X-cor INFO @ Sat, 03 Apr 2021 10:35:24: #2 finished! INFO @ Sat, 03 Apr 2021 10:35:24: #2 predicted fragment length is 169 bps INFO @ Sat, 03 Apr 2021 10:35:24: #2 alternative fragment length(s) may be 169 bps INFO @ Sat, 03 Apr 2021 10:35:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.20_model.r WARNING @ Sat, 03 Apr 2021 10:35:24: #2 Since the d (169) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:35:24: #2 You may need to consider one of the other alternative d(s): 169 WARNING @ Sat, 03 Apr 2021 10:35:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:35:24: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:35:24: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:35:28: 59000000 INFO @ Sat, 03 Apr 2021 10:35:40: 60000000 INFO @ Sat, 03 Apr 2021 10:35:45: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:35:45: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:35:45: #1 total tags in treatment: 22940092 INFO @ Sat, 03 Apr 2021 10:35:45: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:35:45: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:35:45: #1 tags after filtering in treatment: 17447249 INFO @ Sat, 03 Apr 2021 10:35:45: #1 Redundant rate of treatment: 0.24 INFO @ Sat, 03 Apr 2021 10:35:45: #1 finished! INFO @ Sat, 03 Apr 2021 10:35:45: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:35:45: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:35:46: #2 number of paired peaks: 178 WARNING @ Sat, 03 Apr 2021 10:35:46: Fewer paired peaks (178) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 178 pairs to build model! INFO @ Sat, 03 Apr 2021 10:35:46: start model_add_line... INFO @ Sat, 03 Apr 2021 10:35:47: start X-correlation... INFO @ Sat, 03 Apr 2021 10:35:47: end of X-cor INFO @ Sat, 03 Apr 2021 10:35:47: #2 finished! INFO @ Sat, 03 Apr 2021 10:35:47: #2 predicted fragment length is 169 bps INFO @ Sat, 03 Apr 2021 10:35:47: #2 alternative fragment length(s) may be 169 bps INFO @ Sat, 03 Apr 2021 10:35:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.10_model.r WARNING @ Sat, 03 Apr 2021 10:35:47: #2 Since the d (169) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:35:47: #2 You may need to consider one of the other alternative d(s): 169 WARNING @ Sat, 03 Apr 2021 10:35:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:35:47: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:35:47: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:35:59: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:36:03: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:36:20: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.05_peaks.xls INFO @ Sat, 03 Apr 2021 10:36:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:36:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.05_summits.bed INFO @ Sat, 03 Apr 2021 10:36:21: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (7838 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:36:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.20_peaks.xls INFO @ Sat, 03 Apr 2021 10:36:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:36:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.20_summits.bed INFO @ Sat, 03 Apr 2021 10:36:22: Done! pass1 - making usageList (14 chroms): 0 millis pass2 - checking and writing primary data (649 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:36:27: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:36:48: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.10_peaks.xls INFO @ Sat, 03 Apr 2021 10:36:48: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:36:48: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817546/SRX6817546.10_summits.bed INFO @ Sat, 03 Apr 2021 10:36:48: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2908 records, 4 fields): 4 millis CompletedMACS2peakCalling