Job ID = 12265392 SRX = SRX6817545 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 79483583 spots for SRR10084536/SRR10084536.sra Written 79483583 spots for SRR10084536/SRR10084536.sra fastq に変換しました。 bowtie でマッピング中... Your job 12267456 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:50:32 79483583 reads; of these: 79483583 (100.00%) were paired; of these: 44499413 (55.99%) aligned concordantly 0 times 24701395 (31.08%) aligned concordantly exactly 1 time 10282775 (12.94%) aligned concordantly >1 times ---- 44499413 pairs aligned concordantly 0 times; of these: 5193781 (11.67%) aligned discordantly 1 time ---- 39305632 pairs aligned 0 times concordantly or discordantly; of these: 78611264 mates make up the pairs; of these: 69877466 (88.89%) aligned 0 times 1436735 (1.83%) aligned exactly 1 time 7297063 (9.28%) aligned >1 times 56.04% overall alignment rate Time searching: 02:50:32 Overall time: 02:50:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 68 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 14683459 / 39711787 = 0.3698 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:32:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:32:06: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:32:06: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:32:15: 1000000 INFO @ Sat, 03 Apr 2021 10:32:23: 2000000 INFO @ Sat, 03 Apr 2021 10:32:31: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:32:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:32:36: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:32:36: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:32:39: 4000000 INFO @ Sat, 03 Apr 2021 10:32:46: 1000000 INFO @ Sat, 03 Apr 2021 10:32:48: 5000000 INFO @ Sat, 03 Apr 2021 10:32:55: 2000000 INFO @ Sat, 03 Apr 2021 10:32:57: 6000000 INFO @ Sat, 03 Apr 2021 10:33:04: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:33:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:33:06: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:33:06: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:33:07: 7000000 INFO @ Sat, 03 Apr 2021 10:33:14: 4000000 INFO @ Sat, 03 Apr 2021 10:33:16: 1000000 INFO @ Sat, 03 Apr 2021 10:33:17: 8000000 INFO @ Sat, 03 Apr 2021 10:33:24: 5000000 INFO @ Sat, 03 Apr 2021 10:33:27: 9000000 INFO @ Sat, 03 Apr 2021 10:33:27: 2000000 INFO @ Sat, 03 Apr 2021 10:33:34: 6000000 INFO @ Sat, 03 Apr 2021 10:33:36: 10000000 INFO @ Sat, 03 Apr 2021 10:33:36: 3000000 INFO @ Sat, 03 Apr 2021 10:33:44: 7000000 INFO @ Sat, 03 Apr 2021 10:33:45: 11000000 INFO @ Sat, 03 Apr 2021 10:33:46: 4000000 INFO @ Sat, 03 Apr 2021 10:33:53: 8000000 INFO @ Sat, 03 Apr 2021 10:33:54: 12000000 INFO @ Sat, 03 Apr 2021 10:33:55: 5000000 INFO @ Sat, 03 Apr 2021 10:34:03: 9000000 INFO @ Sat, 03 Apr 2021 10:34:03: 13000000 INFO @ Sat, 03 Apr 2021 10:34:05: 6000000 INFO @ Sat, 03 Apr 2021 10:34:12: 10000000 INFO @ Sat, 03 Apr 2021 10:34:12: 14000000 INFO @ Sat, 03 Apr 2021 10:34:15: 7000000 INFO @ Sat, 03 Apr 2021 10:34:21: 15000000 INFO @ Sat, 03 Apr 2021 10:34:22: 11000000 INFO @ Sat, 03 Apr 2021 10:34:24: 8000000 INFO @ Sat, 03 Apr 2021 10:34:31: 16000000 INFO @ Sat, 03 Apr 2021 10:34:31: 12000000 INFO @ Sat, 03 Apr 2021 10:34:34: 9000000 INFO @ Sat, 03 Apr 2021 10:34:40: 17000000 INFO @ Sat, 03 Apr 2021 10:34:41: 13000000 INFO @ Sat, 03 Apr 2021 10:34:43: 10000000 INFO @ Sat, 03 Apr 2021 10:34:49: 18000000 INFO @ Sat, 03 Apr 2021 10:34:50: 14000000 INFO @ Sat, 03 Apr 2021 10:34:52: 11000000 INFO @ Sat, 03 Apr 2021 10:34:58: 19000000 INFO @ Sat, 03 Apr 2021 10:35:00: 15000000 INFO @ Sat, 03 Apr 2021 10:35:02: 12000000 INFO @ Sat, 03 Apr 2021 10:35:07: 20000000 INFO @ Sat, 03 Apr 2021 10:35:09: 16000000 INFO @ Sat, 03 Apr 2021 10:35:11: 13000000 INFO @ Sat, 03 Apr 2021 10:35:16: 21000000 INFO @ Sat, 03 Apr 2021 10:35:19: 17000000 INFO @ Sat, 03 Apr 2021 10:35:21: 14000000 INFO @ Sat, 03 Apr 2021 10:35:25: 22000000 INFO @ Sat, 03 Apr 2021 10:35:28: 18000000 INFO @ Sat, 03 Apr 2021 10:35:31: 15000000 INFO @ Sat, 03 Apr 2021 10:35:34: 23000000 INFO @ Sat, 03 Apr 2021 10:35:38: 19000000 INFO @ Sat, 03 Apr 2021 10:35:40: 16000000 INFO @ Sat, 03 Apr 2021 10:35:43: 24000000 INFO @ Sat, 03 Apr 2021 10:35:47: 20000000 INFO @ Sat, 03 Apr 2021 10:35:50: 17000000 INFO @ Sat, 03 Apr 2021 10:35:52: 25000000 INFO @ Sat, 03 Apr 2021 10:35:57: 21000000 INFO @ Sat, 03 Apr 2021 10:35:59: 18000000 INFO @ Sat, 03 Apr 2021 10:36:01: 26000000 INFO @ Sat, 03 Apr 2021 10:36:06: 22000000 INFO @ Sat, 03 Apr 2021 10:36:09: 19000000 INFO @ Sat, 03 Apr 2021 10:36:09: 27000000 INFO @ Sat, 03 Apr 2021 10:36:16: 23000000 INFO @ Sat, 03 Apr 2021 10:36:18: 20000000 INFO @ Sat, 03 Apr 2021 10:36:18: 28000000 INFO @ Sat, 03 Apr 2021 10:36:25: 24000000 INFO @ Sat, 03 Apr 2021 10:36:27: 29000000 INFO @ Sat, 03 Apr 2021 10:36:28: 21000000 INFO @ Sat, 03 Apr 2021 10:36:35: 25000000 INFO @ Sat, 03 Apr 2021 10:36:36: 30000000 INFO @ Sat, 03 Apr 2021 10:36:37: 22000000 INFO @ Sat, 03 Apr 2021 10:36:44: 26000000 INFO @ Sat, 03 Apr 2021 10:36:45: 31000000 INFO @ Sat, 03 Apr 2021 10:36:47: 23000000 INFO @ Sat, 03 Apr 2021 10:36:53: 27000000 INFO @ Sat, 03 Apr 2021 10:36:53: 32000000 INFO @ Sat, 03 Apr 2021 10:36:56: 24000000 INFO @ Sat, 03 Apr 2021 10:37:02: 33000000 INFO @ Sat, 03 Apr 2021 10:37:03: 28000000 INFO @ Sat, 03 Apr 2021 10:37:05: 25000000 INFO @ Sat, 03 Apr 2021 10:37:12: 29000000 INFO @ Sat, 03 Apr 2021 10:37:13: 34000000 INFO @ Sat, 03 Apr 2021 10:37:15: 26000000 INFO @ Sat, 03 Apr 2021 10:37:22: 30000000 INFO @ Sat, 03 Apr 2021 10:37:23: 35000000 INFO @ Sat, 03 Apr 2021 10:37:25: 27000000 INFO @ Sat, 03 Apr 2021 10:37:32: 31000000 INFO @ Sat, 03 Apr 2021 10:37:34: 36000000 INFO @ Sat, 03 Apr 2021 10:37:35: 28000000 INFO @ Sat, 03 Apr 2021 10:37:42: 32000000 INFO @ Sat, 03 Apr 2021 10:37:45: 29000000 INFO @ Sat, 03 Apr 2021 10:37:45: 37000000 INFO @ Sat, 03 Apr 2021 10:37:52: 33000000 INFO @ Sat, 03 Apr 2021 10:37:55: 30000000 INFO @ Sat, 03 Apr 2021 10:37:56: 38000000 INFO @ Sat, 03 Apr 2021 10:38:02: 34000000 INFO @ Sat, 03 Apr 2021 10:38:04: 31000000 INFO @ Sat, 03 Apr 2021 10:38:07: 39000000 INFO @ Sat, 03 Apr 2021 10:38:12: 35000000 INFO @ Sat, 03 Apr 2021 10:38:14: 32000000 INFO @ Sat, 03 Apr 2021 10:38:18: 40000000 INFO @ Sat, 03 Apr 2021 10:38:22: 36000000 INFO @ Sat, 03 Apr 2021 10:38:24: 33000000 INFO @ Sat, 03 Apr 2021 10:38:28: 41000000 INFO @ Sat, 03 Apr 2021 10:38:31: 37000000 INFO @ Sat, 03 Apr 2021 10:38:33: 34000000 INFO @ Sat, 03 Apr 2021 10:38:36: 42000000 INFO @ Sat, 03 Apr 2021 10:38:41: 38000000 INFO @ Sat, 03 Apr 2021 10:38:43: 35000000 INFO @ Sat, 03 Apr 2021 10:38:45: 43000000 INFO @ Sat, 03 Apr 2021 10:38:50: 39000000 INFO @ Sat, 03 Apr 2021 10:38:52: 36000000 INFO @ Sat, 03 Apr 2021 10:38:54: 44000000 INFO @ Sat, 03 Apr 2021 10:38:59: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 10:39:01: 37000000 INFO @ Sat, 03 Apr 2021 10:39:04: 45000000 INFO @ Sat, 03 Apr 2021 10:39:09: 41000000 INFO @ Sat, 03 Apr 2021 10:39:11: 38000000 INFO @ Sat, 03 Apr 2021 10:39:14: 46000000 INFO @ Sat, 03 Apr 2021 10:39:18: 42000000 INFO @ Sat, 03 Apr 2021 10:39:20: 39000000 INFO @ Sat, 03 Apr 2021 10:39:23: 47000000 INFO @ Sat, 03 Apr 2021 10:39:27: 43000000 INFO @ Sat, 03 Apr 2021 10:39:30: 40000000 INFO @ Sat, 03 Apr 2021 10:39:33: 48000000 INFO @ Sat, 03 Apr 2021 10:39:36: 44000000 INFO @ Sat, 03 Apr 2021 10:39:39: 41000000 INFO @ Sat, 03 Apr 2021 10:39:43: 49000000 INFO @ Sat, 03 Apr 2021 10:39:46: 45000000 INFO @ Sat, 03 Apr 2021 10:39:49: 42000000 INFO @ Sat, 03 Apr 2021 10:39:54: 50000000 INFO @ Sat, 03 Apr 2021 10:39:56: 46000000 INFO @ Sat, 03 Apr 2021 10:39:58: 43000000 INFO @ Sat, 03 Apr 2021 10:40:05: 51000000 INFO @ Sat, 03 Apr 2021 10:40:05: 47000000 INFO @ Sat, 03 Apr 2021 10:40:08: 44000000 INFO @ Sat, 03 Apr 2021 10:40:15: 48000000 INFO @ Sat, 03 Apr 2021 10:40:16: 52000000 INFO @ Sat, 03 Apr 2021 10:40:18: 45000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 10:40:25: 49000000 INFO @ Sat, 03 Apr 2021 10:40:27: 53000000 INFO @ Sat, 03 Apr 2021 10:40:27: 46000000 INFO @ Sat, 03 Apr 2021 10:40:36: 50000000 INFO @ Sat, 03 Apr 2021 10:40:37: 47000000 INFO @ Sat, 03 Apr 2021 10:40:38: 54000000 INFO @ Sat, 03 Apr 2021 10:40:46: 51000000 INFO @ Sat, 03 Apr 2021 10:40:47: 48000000 INFO @ Sat, 03 Apr 2021 10:40:50: 55000000 INFO @ Sat, 03 Apr 2021 10:40:56: 52000000 INFO @ Sat, 03 Apr 2021 10:40:57: 49000000 INFO @ Sat, 03 Apr 2021 10:41:01: 56000000 INFO @ Sat, 03 Apr 2021 10:41:06: 53000000 INFO @ Sat, 03 Apr 2021 10:41:08: 50000000 INFO @ Sat, 03 Apr 2021 10:41:12: 57000000 INFO @ Sat, 03 Apr 2021 10:41:16: 54000000 INFO @ Sat, 03 Apr 2021 10:41:18: 51000000 INFO @ Sat, 03 Apr 2021 10:41:23: 58000000 INFO @ Sat, 03 Apr 2021 10:41:27: 55000000 INFO @ Sat, 03 Apr 2021 10:41:28: 52000000 INFO @ Sat, 03 Apr 2021 10:41:34: 59000000 INFO @ Sat, 03 Apr 2021 10:41:37: 56000000 INFO @ Sat, 03 Apr 2021 10:41:38: 53000000 INFO @ Sat, 03 Apr 2021 10:41:42: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:41:42: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:41:42: #1 total tags in treatment: 21990875 INFO @ Sat, 03 Apr 2021 10:41:42: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:41:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:41:43: #1 tags after filtering in treatment: 16870797 INFO @ Sat, 03 Apr 2021 10:41:43: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 10:41:43: #1 finished! INFO @ Sat, 03 Apr 2021 10:41:43: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:41:43: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:41:44: #2 number of paired peaks: 190 WARNING @ Sat, 03 Apr 2021 10:41:44: Fewer paired peaks (190) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 190 pairs to build model! INFO @ Sat, 03 Apr 2021 10:41:44: start model_add_line... INFO @ Sat, 03 Apr 2021 10:41:44: start X-correlation... INFO @ Sat, 03 Apr 2021 10:41:44: end of X-cor INFO @ Sat, 03 Apr 2021 10:41:44: #2 finished! INFO @ Sat, 03 Apr 2021 10:41:44: #2 predicted fragment length is 172 bps INFO @ Sat, 03 Apr 2021 10:41:44: #2 alternative fragment length(s) may be 172 bps INFO @ Sat, 03 Apr 2021 10:41:44: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.05_model.r WARNING @ Sat, 03 Apr 2021 10:41:44: #2 Since the d (172) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:41:44: #2 You may need to consider one of the other alternative d(s): 172 WARNING @ Sat, 03 Apr 2021 10:41:44: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:41:44: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:41:44: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:41:47: 57000000 INFO @ Sat, 03 Apr 2021 10:41:48: 54000000 INFO @ Sat, 03 Apr 2021 10:41:56: 58000000 INFO @ Sat, 03 Apr 2021 10:41:58: 55000000 INFO @ Sat, 03 Apr 2021 10:42:05: 59000000 INFO @ Sat, 03 Apr 2021 10:42:07: 56000000 INFO @ Sat, 03 Apr 2021 10:42:12: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:42:12: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:42:12: #1 total tags in treatment: 21990875 INFO @ Sat, 03 Apr 2021 10:42:12: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:42:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:42:13: #1 tags after filtering in treatment: 16870797 INFO @ Sat, 03 Apr 2021 10:42:13: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 10:42:13: #1 finished! INFO @ Sat, 03 Apr 2021 10:42:13: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:42:13: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:42:14: #2 number of paired peaks: 190 WARNING @ Sat, 03 Apr 2021 10:42:14: Fewer paired peaks (190) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 190 pairs to build model! INFO @ Sat, 03 Apr 2021 10:42:14: start model_add_line... INFO @ Sat, 03 Apr 2021 10:42:14: start X-correlation... INFO @ Sat, 03 Apr 2021 10:42:14: end of X-cor INFO @ Sat, 03 Apr 2021 10:42:14: #2 finished! INFO @ Sat, 03 Apr 2021 10:42:14: #2 predicted fragment length is 172 bps INFO @ Sat, 03 Apr 2021 10:42:14: #2 alternative fragment length(s) may be 172 bps INFO @ Sat, 03 Apr 2021 10:42:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.10_model.r WARNING @ Sat, 03 Apr 2021 10:42:14: #2 Since the d (172) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:42:14: #2 You may need to consider one of the other alternative d(s): 172 WARNING @ Sat, 03 Apr 2021 10:42:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:42:14: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:42:14: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:42:16: 57000000 INFO @ Sat, 03 Apr 2021 10:42:22: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:42:25: 58000000 INFO @ Sat, 03 Apr 2021 10:42:33: 59000000 INFO @ Sat, 03 Apr 2021 10:42:39: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:42:39: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:42:39: #1 total tags in treatment: 21990875 INFO @ Sat, 03 Apr 2021 10:42:39: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:42:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:42:40: #1 tags after filtering in treatment: 16870797 INFO @ Sat, 03 Apr 2021 10:42:40: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 10:42:40: #1 finished! INFO @ Sat, 03 Apr 2021 10:42:40: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:42:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:42:41: #2 number of paired peaks: 190 WARNING @ Sat, 03 Apr 2021 10:42:41: Fewer paired peaks (190) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 190 pairs to build model! INFO @ Sat, 03 Apr 2021 10:42:41: start model_add_line... INFO @ Sat, 03 Apr 2021 10:42:41: start X-correlation... INFO @ Sat, 03 Apr 2021 10:42:41: end of X-cor INFO @ Sat, 03 Apr 2021 10:42:41: #2 finished! INFO @ Sat, 03 Apr 2021 10:42:41: #2 predicted fragment length is 172 bps INFO @ Sat, 03 Apr 2021 10:42:41: #2 alternative fragment length(s) may be 172 bps INFO @ Sat, 03 Apr 2021 10:42:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.20_model.r WARNING @ Sat, 03 Apr 2021 10:42:41: #2 Since the d (172) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:42:41: #2 You may need to consider one of the other alternative d(s): 172 WARNING @ Sat, 03 Apr 2021 10:42:41: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:42:41: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:42:41: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:42:42: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.05_peaks.xls INFO @ Sat, 03 Apr 2021 10:42:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:42:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.05_summits.bed INFO @ Sat, 03 Apr 2021 10:42:42: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (7251 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:42:51: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:43:09: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.10_peaks.xls INFO @ Sat, 03 Apr 2021 10:43:09: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:43:09: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.10_summits.bed INFO @ Sat, 03 Apr 2021 10:43:09: Done! pass1 - making usageList (15 chroms): 0 millis pass2 - checking and writing primary data (2602 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:43:17: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:43:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.20_peaks.xls INFO @ Sat, 03 Apr 2021 10:43:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:43:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817545/SRX6817545.20_summits.bed INFO @ Sat, 03 Apr 2021 10:43:35: Done! pass1 - making usageList (13 chroms): 0 millis pass2 - checking and writing primary data (660 records, 4 fields): 2 millis CompletedMACS2peakCalling