Job ID = 12265386 SRX = SRX6817539 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 43637584 spots for SRR10084530/SRR10084530.sra Written 43637584 spots for SRR10084530/SRR10084530.sra fastq に変換しました。 bowtie でマッピング中... Your job 12266891 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:14:35 43637584 reads; of these: 43637584 (100.00%) were paired; of these: 19454321 (44.58%) aligned concordantly 0 times 18361685 (42.08%) aligned concordantly exactly 1 time 5821578 (13.34%) aligned concordantly >1 times ---- 19454321 pairs aligned concordantly 0 times; of these: 5367009 (27.59%) aligned discordantly 1 time ---- 14087312 pairs aligned 0 times concordantly or discordantly; of these: 28174624 mates make up the pairs; of these: 22827361 (81.02%) aligned 0 times 1662112 (5.90%) aligned exactly 1 time 3685151 (13.08%) aligned >1 times 73.84% overall alignment rate Time searching: 02:14:36 Overall time: 02:14:36 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8815926 / 29411021 = 0.2997 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:54:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:54:48: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:54:48: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:54:58: 1000000 INFO @ Sat, 03 Apr 2021 09:55:08: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:55:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:55:18: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:55:18: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:55:18: 3000000 INFO @ Sat, 03 Apr 2021 09:55:28: 1000000 INFO @ Sat, 03 Apr 2021 09:55:29: 4000000 INFO @ Sat, 03 Apr 2021 09:55:39: 2000000 INFO @ Sat, 03 Apr 2021 09:55:39: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:55:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:55:48: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:55:48: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:55:49: 3000000 INFO @ Sat, 03 Apr 2021 09:55:50: 6000000 INFO @ Sat, 03 Apr 2021 09:56:00: 4000000 INFO @ Sat, 03 Apr 2021 09:56:00: 7000000 INFO @ Sat, 03 Apr 2021 09:56:02: 1000000 INFO @ Sat, 03 Apr 2021 09:56:11: 5000000 INFO @ Sat, 03 Apr 2021 09:56:11: 8000000 INFO @ Sat, 03 Apr 2021 09:56:17: 2000000 INFO @ Sat, 03 Apr 2021 09:56:21: 6000000 INFO @ Sat, 03 Apr 2021 09:56:21: 9000000 INFO @ Sat, 03 Apr 2021 09:56:32: 3000000 INFO @ Sat, 03 Apr 2021 09:56:32: 7000000 INFO @ Sat, 03 Apr 2021 09:56:32: 10000000 INFO @ Sat, 03 Apr 2021 09:56:43: 8000000 INFO @ Sat, 03 Apr 2021 09:56:43: 11000000 INFO @ Sat, 03 Apr 2021 09:56:47: 4000000 INFO @ Sat, 03 Apr 2021 09:56:53: 9000000 INFO @ Sat, 03 Apr 2021 09:56:54: 12000000 INFO @ Sat, 03 Apr 2021 09:57:02: 5000000 INFO @ Sat, 03 Apr 2021 09:57:04: 10000000 INFO @ Sat, 03 Apr 2021 09:57:04: 13000000 INFO @ Sat, 03 Apr 2021 09:57:15: 11000000 INFO @ Sat, 03 Apr 2021 09:57:15: 14000000 INFO @ Sat, 03 Apr 2021 09:57:17: 6000000 INFO @ Sat, 03 Apr 2021 09:57:25: 12000000 INFO @ Sat, 03 Apr 2021 09:57:26: 15000000 INFO @ Sat, 03 Apr 2021 09:57:33: 7000000 INFO @ Sat, 03 Apr 2021 09:57:36: 13000000 INFO @ Sat, 03 Apr 2021 09:57:36: 16000000 INFO @ Sat, 03 Apr 2021 09:57:47: 14000000 INFO @ Sat, 03 Apr 2021 09:57:47: 17000000 INFO @ Sat, 03 Apr 2021 09:57:50: 8000000 INFO @ Sat, 03 Apr 2021 09:57:57: 15000000 INFO @ Sat, 03 Apr 2021 09:57:58: 18000000 INFO @ Sat, 03 Apr 2021 09:58:06: 9000000 INFO @ Sat, 03 Apr 2021 09:58:08: 16000000 INFO @ Sat, 03 Apr 2021 09:58:08: 19000000 INFO @ Sat, 03 Apr 2021 09:58:19: 17000000 INFO @ Sat, 03 Apr 2021 09:58:19: 20000000 INFO @ Sat, 03 Apr 2021 09:58:21: 10000000 INFO @ Sat, 03 Apr 2021 09:58:29: 21000000 INFO @ Sat, 03 Apr 2021 09:58:29: 18000000 INFO @ Sat, 03 Apr 2021 09:58:37: 11000000 INFO @ Sat, 03 Apr 2021 09:58:39: 22000000 INFO @ Sat, 03 Apr 2021 09:58:40: 19000000 INFO @ Sat, 03 Apr 2021 09:58:50: 23000000 INFO @ Sat, 03 Apr 2021 09:58:51: 20000000 INFO @ Sat, 03 Apr 2021 09:58:53: 12000000 INFO @ Sat, 03 Apr 2021 09:59:00: 24000000 INFO @ Sat, 03 Apr 2021 09:59:01: 21000000 INFO @ Sat, 03 Apr 2021 09:59:09: 13000000 INFO @ Sat, 03 Apr 2021 09:59:10: 25000000 INFO @ Sat, 03 Apr 2021 09:59:11: 22000000 INFO @ Sat, 03 Apr 2021 09:59:20: 26000000 INFO @ Sat, 03 Apr 2021 09:59:21: 23000000 INFO @ Sat, 03 Apr 2021 09:59:25: 14000000 INFO @ Sat, 03 Apr 2021 09:59:31: 27000000 INFO @ Sat, 03 Apr 2021 09:59:32: 24000000 INFO @ Sat, 03 Apr 2021 09:59:40: 28000000 INFO @ Sat, 03 Apr 2021 09:59:41: 15000000 INFO @ Sat, 03 Apr 2021 09:59:42: 25000000 INFO @ Sat, 03 Apr 2021 09:59:50: 29000000 INFO @ Sat, 03 Apr 2021 09:59:52: 26000000 INFO @ Sat, 03 Apr 2021 09:59:57: 16000000 INFO @ Sat, 03 Apr 2021 10:00:01: 30000000 INFO @ Sat, 03 Apr 2021 10:00:02: 27000000 INFO @ Sat, 03 Apr 2021 10:00:11: 31000000 INFO @ Sat, 03 Apr 2021 10:00:12: 28000000 INFO @ Sat, 03 Apr 2021 10:00:13: 17000000 INFO @ Sat, 03 Apr 2021 10:00:21: 32000000 INFO @ Sat, 03 Apr 2021 10:00:22: 29000000 INFO @ Sat, 03 Apr 2021 10:00:29: 18000000 INFO @ Sat, 03 Apr 2021 10:00:31: 33000000 INFO @ Sat, 03 Apr 2021 10:00:32: 30000000 INFO @ Sat, 03 Apr 2021 10:00:41: 34000000 INFO @ Sat, 03 Apr 2021 10:00:42: 31000000 INFO @ Sat, 03 Apr 2021 10:00:45: 19000000 INFO @ Sat, 03 Apr 2021 10:00:50: 35000000 INFO @ Sat, 03 Apr 2021 10:00:53: 32000000 INFO @ Sat, 03 Apr 2021 10:01:00: 36000000 INFO @ Sat, 03 Apr 2021 10:01:00: 20000000 INFO @ Sat, 03 Apr 2021 10:01:03: 33000000 INFO @ Sat, 03 Apr 2021 10:01:10: 37000000 INFO @ Sat, 03 Apr 2021 10:01:13: 34000000 INFO @ Sat, 03 Apr 2021 10:01:15: 21000000 INFO @ Sat, 03 Apr 2021 10:01:20: 38000000 INFO @ Sat, 03 Apr 2021 10:01:22: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 10:01:30: 39000000 INFO @ Sat, 03 Apr 2021 10:01:30: 22000000 INFO @ Sat, 03 Apr 2021 10:01:32: 36000000 INFO @ Sat, 03 Apr 2021 10:01:40: 40000000 INFO @ Sat, 03 Apr 2021 10:01:42: 37000000 INFO @ Sat, 03 Apr 2021 10:01:45: 23000000 INFO @ Sat, 03 Apr 2021 10:01:50: 41000000 INFO @ Sat, 03 Apr 2021 10:01:51: 38000000 INFO @ Sat, 03 Apr 2021 10:02:00: 24000000 INFO @ Sat, 03 Apr 2021 10:02:01: 42000000 INFO @ Sat, 03 Apr 2021 10:02:02: 39000000 INFO @ Sat, 03 Apr 2021 10:02:11: 43000000 INFO @ Sat, 03 Apr 2021 10:02:12: 40000000 INFO @ Sat, 03 Apr 2021 10:02:14: 25000000 INFO @ Sat, 03 Apr 2021 10:02:21: 44000000 INFO @ Sat, 03 Apr 2021 10:02:23: 41000000 INFO @ Sat, 03 Apr 2021 10:02:29: 26000000 INFO @ Sat, 03 Apr 2021 10:02:31: 45000000 INFO @ Sat, 03 Apr 2021 10:02:33: 42000000 INFO @ Sat, 03 Apr 2021 10:02:41: 46000000 INFO @ Sat, 03 Apr 2021 10:02:43: 43000000 INFO @ Sat, 03 Apr 2021 10:02:44: 27000000 INFO @ Sat, 03 Apr 2021 10:02:50: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:02:50: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:02:50: #1 total tags in treatment: 16439076 INFO @ Sat, 03 Apr 2021 10:02:50: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:02:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:02:50: #1 tags after filtering in treatment: 12892226 INFO @ Sat, 03 Apr 2021 10:02:50: #1 Redundant rate of treatment: 0.22 INFO @ Sat, 03 Apr 2021 10:02:50: #1 finished! INFO @ Sat, 03 Apr 2021 10:02:50: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:02:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:02:51: #2 number of paired peaks: 283 WARNING @ Sat, 03 Apr 2021 10:02:51: Fewer paired peaks (283) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 283 pairs to build model! INFO @ Sat, 03 Apr 2021 10:02:51: start model_add_line... INFO @ Sat, 03 Apr 2021 10:02:51: start X-correlation... INFO @ Sat, 03 Apr 2021 10:02:51: end of X-cor INFO @ Sat, 03 Apr 2021 10:02:51: #2 finished! INFO @ Sat, 03 Apr 2021 10:02:51: #2 predicted fragment length is 202 bps INFO @ Sat, 03 Apr 2021 10:02:51: #2 alternative fragment length(s) may be 202 bps INFO @ Sat, 03 Apr 2021 10:02:51: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.05_model.r WARNING @ Sat, 03 Apr 2021 10:02:51: #2 Since the d (202) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:02:51: #2 You may need to consider one of the other alternative d(s): 202 WARNING @ Sat, 03 Apr 2021 10:02:51: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:02:51: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:02:51: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:02:53: 44000000 INFO @ Sat, 03 Apr 2021 10:02:58: 28000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 10:03:03: 45000000 INFO @ Sat, 03 Apr 2021 10:03:12: 29000000 INFO @ Sat, 03 Apr 2021 10:03:14: 46000000 INFO @ Sat, 03 Apr 2021 10:03:22: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:03:22: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:03:22: #1 total tags in treatment: 16439076 INFO @ Sat, 03 Apr 2021 10:03:22: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:03:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:03:22: #1 tags after filtering in treatment: 12892226 INFO @ Sat, 03 Apr 2021 10:03:22: #1 Redundant rate of treatment: 0.22 INFO @ Sat, 03 Apr 2021 10:03:22: #1 finished! INFO @ Sat, 03 Apr 2021 10:03:22: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:03:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:03:23: #2 number of paired peaks: 283 WARNING @ Sat, 03 Apr 2021 10:03:23: Fewer paired peaks (283) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 283 pairs to build model! INFO @ Sat, 03 Apr 2021 10:03:23: start model_add_line... INFO @ Sat, 03 Apr 2021 10:03:23: start X-correlation... INFO @ Sat, 03 Apr 2021 10:03:23: end of X-cor INFO @ Sat, 03 Apr 2021 10:03:23: #2 finished! INFO @ Sat, 03 Apr 2021 10:03:23: #2 predicted fragment length is 202 bps INFO @ Sat, 03 Apr 2021 10:03:23: #2 alternative fragment length(s) may be 202 bps INFO @ Sat, 03 Apr 2021 10:03:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.10_model.r WARNING @ Sat, 03 Apr 2021 10:03:23: #2 Since the d (202) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:03:23: #2 You may need to consider one of the other alternative d(s): 202 WARNING @ Sat, 03 Apr 2021 10:03:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:03:23: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:03:23: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:03:26: 30000000 INFO @ Sat, 03 Apr 2021 10:03:29: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:03:40: 31000000 INFO @ Sat, 03 Apr 2021 10:03:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.05_peaks.xls INFO @ Sat, 03 Apr 2021 10:03:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:03:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.05_summits.bed INFO @ Sat, 03 Apr 2021 10:03:49: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (5808 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:03:53: 32000000 INFO @ Sat, 03 Apr 2021 10:04:01: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:04:07: 33000000 INFO @ Sat, 03 Apr 2021 10:04:20: 34000000 INFO @ Sat, 03 Apr 2021 10:04:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.10_peaks.xls INFO @ Sat, 03 Apr 2021 10:04:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:04:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.10_summits.bed INFO @ Sat, 03 Apr 2021 10:04:21: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (2086 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:04:32: 35000000 INFO @ Sat, 03 Apr 2021 10:04:43: 36000000 INFO @ Sat, 03 Apr 2021 10:04:55: 37000000 INFO @ Sat, 03 Apr 2021 10:05:05: 38000000 INFO @ Sat, 03 Apr 2021 10:05:16: 39000000 INFO @ Sat, 03 Apr 2021 10:05:26: 40000000 INFO @ Sat, 03 Apr 2021 10:05:36: 41000000 INFO @ Sat, 03 Apr 2021 10:05:46: 42000000 INFO @ Sat, 03 Apr 2021 10:05:56: 43000000 INFO @ Sat, 03 Apr 2021 10:06:05: 44000000 INFO @ Sat, 03 Apr 2021 10:06:15: 45000000 INFO @ Sat, 03 Apr 2021 10:06:25: 46000000 INFO @ Sat, 03 Apr 2021 10:06:33: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:06:33: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:06:33: #1 total tags in treatment: 16439076 INFO @ Sat, 03 Apr 2021 10:06:33: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:06:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:06:33: #1 tags after filtering in treatment: 12892226 INFO @ Sat, 03 Apr 2021 10:06:33: #1 Redundant rate of treatment: 0.22 INFO @ Sat, 03 Apr 2021 10:06:33: #1 finished! INFO @ Sat, 03 Apr 2021 10:06:33: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:06:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:06:34: #2 number of paired peaks: 283 WARNING @ Sat, 03 Apr 2021 10:06:34: Fewer paired peaks (283) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 283 pairs to build model! INFO @ Sat, 03 Apr 2021 10:06:34: start model_add_line... INFO @ Sat, 03 Apr 2021 10:06:34: start X-correlation... INFO @ Sat, 03 Apr 2021 10:06:34: end of X-cor INFO @ Sat, 03 Apr 2021 10:06:34: #2 finished! INFO @ Sat, 03 Apr 2021 10:06:34: #2 predicted fragment length is 202 bps INFO @ Sat, 03 Apr 2021 10:06:34: #2 alternative fragment length(s) may be 202 bps INFO @ Sat, 03 Apr 2021 10:06:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.20_model.r WARNING @ Sat, 03 Apr 2021 10:06:34: #2 Since the d (202) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:06:34: #2 You may need to consider one of the other alternative d(s): 202 WARNING @ Sat, 03 Apr 2021 10:06:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:06:34: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:06:34: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:07:12: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:07:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.20_peaks.xls INFO @ Sat, 03 Apr 2021 10:07:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:07:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817539/SRX6817539.20_summits.bed INFO @ Sat, 03 Apr 2021 10:07:31: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (517 records, 4 fields): 5 millis CompletedMACS2peakCalling