Job ID = 12265384 SRX = SRX6817537 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 53841163 spots for SRR10084528/SRR10084528.sra Written 53841163 spots for SRR10084528/SRR10084528.sra fastq に変換しました。 bowtie でマッピング中... Your job 12267197 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:40:44 53841163 reads; of these: 53841163 (100.00%) were paired; of these: 25125011 (46.67%) aligned concordantly 0 times 22879485 (42.49%) aligned concordantly exactly 1 time 5836667 (10.84%) aligned concordantly >1 times ---- 25125011 pairs aligned concordantly 0 times; of these: 7233872 (28.79%) aligned discordantly 1 time ---- 17891139 pairs aligned 0 times concordantly or discordantly; of these: 35782278 mates make up the pairs; of these: 29414246 (82.20%) aligned 0 times 2248671 (6.28%) aligned exactly 1 time 4119361 (11.51%) aligned >1 times 72.68% overall alignment rate Time searching: 02:40:45 Overall time: 02:40:45 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 60 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8720540 / 35774720 = 0.2438 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:26:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:26:22: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:26:22: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:26:32: 1000000 INFO @ Sat, 03 Apr 2021 10:26:42: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:26:52: 3000000 INFO @ Sat, 03 Apr 2021 10:26:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:26:52: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:26:52: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:27:03: 4000000 INFO @ Sat, 03 Apr 2021 10:27:05: 1000000 INFO @ Sat, 03 Apr 2021 10:27:15: 5000000 INFO @ Sat, 03 Apr 2021 10:27:16: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:27:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:27:22: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:27:22: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:27:26: 6000000 INFO @ Sat, 03 Apr 2021 10:27:28: 3000000 INFO @ Sat, 03 Apr 2021 10:27:33: 1000000 INFO @ Sat, 03 Apr 2021 10:27:37: 7000000 INFO @ Sat, 03 Apr 2021 10:27:40: 4000000 INFO @ Sat, 03 Apr 2021 10:27:44: 2000000 INFO @ Sat, 03 Apr 2021 10:27:50: 8000000 INFO @ Sat, 03 Apr 2021 10:27:54: 5000000 INFO @ Sat, 03 Apr 2021 10:27:54: 3000000 INFO @ Sat, 03 Apr 2021 10:28:02: 9000000 INFO @ Sat, 03 Apr 2021 10:28:05: 4000000 INFO @ Sat, 03 Apr 2021 10:28:06: 6000000 INFO @ Sat, 03 Apr 2021 10:28:14: 10000000 INFO @ Sat, 03 Apr 2021 10:28:16: 5000000 INFO @ Sat, 03 Apr 2021 10:28:17: 7000000 INFO @ Sat, 03 Apr 2021 10:28:25: 11000000 INFO @ Sat, 03 Apr 2021 10:28:26: 6000000 INFO @ Sat, 03 Apr 2021 10:28:29: 8000000 INFO @ Sat, 03 Apr 2021 10:28:37: 12000000 INFO @ Sat, 03 Apr 2021 10:28:37: 7000000 INFO @ Sat, 03 Apr 2021 10:28:41: 9000000 INFO @ Sat, 03 Apr 2021 10:28:49: 8000000 INFO @ Sat, 03 Apr 2021 10:28:49: 13000000 INFO @ Sat, 03 Apr 2021 10:28:53: 10000000 INFO @ Sat, 03 Apr 2021 10:28:59: 9000000 INFO @ Sat, 03 Apr 2021 10:29:00: 14000000 INFO @ Sat, 03 Apr 2021 10:29:05: 11000000 INFO @ Sat, 03 Apr 2021 10:29:10: 10000000 INFO @ Sat, 03 Apr 2021 10:29:12: 15000000 INFO @ Sat, 03 Apr 2021 10:29:17: 12000000 INFO @ Sat, 03 Apr 2021 10:29:20: 11000000 INFO @ Sat, 03 Apr 2021 10:29:25: 16000000 INFO @ Sat, 03 Apr 2021 10:29:31: 12000000 INFO @ Sat, 03 Apr 2021 10:29:31: 13000000 INFO @ Sat, 03 Apr 2021 10:29:37: 17000000 INFO @ Sat, 03 Apr 2021 10:29:41: 13000000 INFO @ Sat, 03 Apr 2021 10:29:43: 14000000 INFO @ Sat, 03 Apr 2021 10:29:49: 18000000 INFO @ Sat, 03 Apr 2021 10:29:52: 14000000 INFO @ Sat, 03 Apr 2021 10:29:54: 15000000 INFO @ Sat, 03 Apr 2021 10:30:01: 19000000 INFO @ Sat, 03 Apr 2021 10:30:03: 15000000 INFO @ Sat, 03 Apr 2021 10:30:06: 16000000 INFO @ Sat, 03 Apr 2021 10:30:13: 20000000 INFO @ Sat, 03 Apr 2021 10:30:14: 16000000 INFO @ Sat, 03 Apr 2021 10:30:19: 17000000 INFO @ Sat, 03 Apr 2021 10:30:25: 17000000 INFO @ Sat, 03 Apr 2021 10:30:25: 21000000 INFO @ Sat, 03 Apr 2021 10:30:31: 18000000 INFO @ Sat, 03 Apr 2021 10:30:36: 18000000 INFO @ Sat, 03 Apr 2021 10:30:37: 22000000 INFO @ Sat, 03 Apr 2021 10:30:42: 19000000 INFO @ Sat, 03 Apr 2021 10:30:46: 19000000 INFO @ Sat, 03 Apr 2021 10:30:49: 23000000 INFO @ Sat, 03 Apr 2021 10:30:54: 20000000 INFO @ Sat, 03 Apr 2021 10:30:57: 20000000 INFO @ Sat, 03 Apr 2021 10:31:02: 24000000 INFO @ Sat, 03 Apr 2021 10:31:08: 21000000 INFO @ Sat, 03 Apr 2021 10:31:08: 21000000 INFO @ Sat, 03 Apr 2021 10:31:14: 25000000 INFO @ Sat, 03 Apr 2021 10:31:19: 22000000 INFO @ Sat, 03 Apr 2021 10:31:20: 22000000 INFO @ Sat, 03 Apr 2021 10:31:26: 26000000 INFO @ Sat, 03 Apr 2021 10:31:29: 23000000 INFO @ Sat, 03 Apr 2021 10:31:32: 23000000 INFO @ Sat, 03 Apr 2021 10:31:38: 27000000 INFO @ Sat, 03 Apr 2021 10:31:40: 24000000 INFO @ Sat, 03 Apr 2021 10:31:43: 24000000 INFO @ Sat, 03 Apr 2021 10:31:51: 28000000 INFO @ Sat, 03 Apr 2021 10:31:51: 25000000 INFO @ Sat, 03 Apr 2021 10:31:56: 25000000 INFO @ Sat, 03 Apr 2021 10:32:02: 29000000 INFO @ Sat, 03 Apr 2021 10:32:03: 26000000 INFO @ Sat, 03 Apr 2021 10:32:08: 26000000 INFO @ Sat, 03 Apr 2021 10:32:13: 27000000 INFO @ Sat, 03 Apr 2021 10:32:14: 30000000 INFO @ Sat, 03 Apr 2021 10:32:20: 27000000 INFO @ Sat, 03 Apr 2021 10:32:24: 28000000 INFO @ Sat, 03 Apr 2021 10:32:26: 31000000 INFO @ Sat, 03 Apr 2021 10:32:32: 28000000 INFO @ Sat, 03 Apr 2021 10:32:34: 29000000 INFO @ Sat, 03 Apr 2021 10:32:39: 32000000 INFO @ Sat, 03 Apr 2021 10:32:45: 30000000 INFO @ Sat, 03 Apr 2021 10:32:45: 29000000 INFO @ Sat, 03 Apr 2021 10:32:51: 33000000 INFO @ Sat, 03 Apr 2021 10:32:55: 31000000 INFO @ Sat, 03 Apr 2021 10:32:57: 30000000 INFO @ Sat, 03 Apr 2021 10:33:03: 34000000 INFO @ Sat, 03 Apr 2021 10:33:06: 32000000 INFO @ Sat, 03 Apr 2021 10:33:08: 31000000 INFO @ Sat, 03 Apr 2021 10:33:14: 35000000 INFO @ Sat, 03 Apr 2021 10:33:17: 33000000 INFO @ Sat, 03 Apr 2021 10:33:20: 32000000 INFO @ Sat, 03 Apr 2021 10:33:27: 36000000 INFO @ Sat, 03 Apr 2021 10:33:28: 34000000 INFO @ Sat, 03 Apr 2021 10:33:32: 33000000 INFO @ Sat, 03 Apr 2021 10:33:39: 37000000 INFO @ Sat, 03 Apr 2021 10:33:40: 35000000 INFO @ Sat, 03 Apr 2021 10:33:44: 34000000 INFO @ Sat, 03 Apr 2021 10:33:50: 36000000 INFO @ Sat, 03 Apr 2021 10:33:50: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 10:33:56: 35000000 INFO @ Sat, 03 Apr 2021 10:34:01: 37000000 INFO @ Sat, 03 Apr 2021 10:34:02: 39000000 INFO @ Sat, 03 Apr 2021 10:34:08: 36000000 INFO @ Sat, 03 Apr 2021 10:34:12: 38000000 INFO @ Sat, 03 Apr 2021 10:34:14: 40000000 INFO @ Sat, 03 Apr 2021 10:34:21: 37000000 INFO @ Sat, 03 Apr 2021 10:34:23: 39000000 INFO @ Sat, 03 Apr 2021 10:34:27: 41000000 INFO @ Sat, 03 Apr 2021 10:34:32: 38000000 INFO @ Sat, 03 Apr 2021 10:34:33: 40000000 INFO @ Sat, 03 Apr 2021 10:34:38: 42000000 INFO @ Sat, 03 Apr 2021 10:34:44: 39000000 INFO @ Sat, 03 Apr 2021 10:34:44: 41000000 INFO @ Sat, 03 Apr 2021 10:34:49: 43000000 INFO @ Sat, 03 Apr 2021 10:34:55: 40000000 INFO @ Sat, 03 Apr 2021 10:34:56: 42000000 INFO @ Sat, 03 Apr 2021 10:35:01: 44000000 INFO @ Sat, 03 Apr 2021 10:35:06: 43000000 INFO @ Sat, 03 Apr 2021 10:35:07: 41000000 INFO @ Sat, 03 Apr 2021 10:35:12: 45000000 INFO @ Sat, 03 Apr 2021 10:35:17: 44000000 INFO @ Sat, 03 Apr 2021 10:35:18: 42000000 INFO @ Sat, 03 Apr 2021 10:35:23: 46000000 INFO @ Sat, 03 Apr 2021 10:35:28: 45000000 INFO @ Sat, 03 Apr 2021 10:35:30: 43000000 INFO @ Sat, 03 Apr 2021 10:35:35: 47000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 10:35:38: 46000000 INFO @ Sat, 03 Apr 2021 10:35:41: 44000000 INFO @ Sat, 03 Apr 2021 10:35:48: 48000000 INFO @ Sat, 03 Apr 2021 10:35:49: 47000000 INFO @ Sat, 03 Apr 2021 10:35:54: 45000000 INFO @ Sat, 03 Apr 2021 10:36:00: 48000000 INFO @ Sat, 03 Apr 2021 10:36:01: 49000000 INFO @ Sat, 03 Apr 2021 10:36:07: 46000000 INFO @ Sat, 03 Apr 2021 10:36:11: 49000000 INFO @ Sat, 03 Apr 2021 10:36:13: 50000000 INFO @ Sat, 03 Apr 2021 10:36:18: 47000000 INFO @ Sat, 03 Apr 2021 10:36:22: 50000000 INFO @ Sat, 03 Apr 2021 10:36:26: 51000000 INFO @ Sat, 03 Apr 2021 10:36:31: 48000000 INFO @ Sat, 03 Apr 2021 10:36:34: 51000000 INFO @ Sat, 03 Apr 2021 10:36:39: 52000000 INFO @ Sat, 03 Apr 2021 10:36:44: 49000000 INFO @ Sat, 03 Apr 2021 10:36:45: 52000000 INFO @ Sat, 03 Apr 2021 10:36:51: 53000000 INFO @ Sat, 03 Apr 2021 10:36:56: 53000000 INFO @ Sat, 03 Apr 2021 10:36:57: 50000000 INFO @ Sat, 03 Apr 2021 10:37:04: 54000000 INFO @ Sat, 03 Apr 2021 10:37:07: 54000000 INFO @ Sat, 03 Apr 2021 10:37:09: 51000000 INFO @ Sat, 03 Apr 2021 10:37:16: 55000000 INFO @ Sat, 03 Apr 2021 10:37:18: 55000000 INFO @ Sat, 03 Apr 2021 10:37:23: 52000000 INFO @ Sat, 03 Apr 2021 10:37:30: 56000000 INFO @ Sat, 03 Apr 2021 10:37:30: 56000000 INFO @ Sat, 03 Apr 2021 10:37:36: 53000000 INFO @ Sat, 03 Apr 2021 10:37:40: 57000000 INFO @ Sat, 03 Apr 2021 10:37:42: 57000000 INFO @ Sat, 03 Apr 2021 10:37:48: 54000000 INFO @ Sat, 03 Apr 2021 10:37:51: 58000000 INFO @ Sat, 03 Apr 2021 10:37:55: 58000000 INFO @ Sat, 03 Apr 2021 10:38:00: 55000000 INFO @ Sat, 03 Apr 2021 10:38:03: 59000000 INFO @ Sat, 03 Apr 2021 10:38:07: 59000000 INFO @ Sat, 03 Apr 2021 10:38:13: 56000000 INFO @ Sat, 03 Apr 2021 10:38:14: 60000000 INFO @ Sat, 03 Apr 2021 10:38:20: 60000000 INFO @ Sat, 03 Apr 2021 10:38:24: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:38:24: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:38:24: #1 total tags in treatment: 21153027 INFO @ Sat, 03 Apr 2021 10:38:24: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:38:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:38:24: #1 tags after filtering in treatment: 16216891 INFO @ Sat, 03 Apr 2021 10:38:24: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 10:38:24: #1 finished! INFO @ Sat, 03 Apr 2021 10:38:24: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:38:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:38:26: #2 number of paired peaks: 153 WARNING @ Sat, 03 Apr 2021 10:38:26: Fewer paired peaks (153) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 153 pairs to build model! INFO @ Sat, 03 Apr 2021 10:38:26: start model_add_line... INFO @ Sat, 03 Apr 2021 10:38:26: start X-correlation... INFO @ Sat, 03 Apr 2021 10:38:26: 57000000 INFO @ Sat, 03 Apr 2021 10:38:26: end of X-cor INFO @ Sat, 03 Apr 2021 10:38:26: #2 finished! INFO @ Sat, 03 Apr 2021 10:38:26: #2 predicted fragment length is 203 bps INFO @ Sat, 03 Apr 2021 10:38:26: #2 alternative fragment length(s) may be 203 bps INFO @ Sat, 03 Apr 2021 10:38:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.20_model.r WARNING @ Sat, 03 Apr 2021 10:38:26: #2 Since the d (203) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:38:26: #2 You may need to consider one of the other alternative d(s): 203 WARNING @ Sat, 03 Apr 2021 10:38:26: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:38:26: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:38:26: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:38:30: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:38:30: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:38:30: #1 total tags in treatment: 21153027 INFO @ Sat, 03 Apr 2021 10:38:30: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:38:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:38:31: #1 tags after filtering in treatment: 16216891 INFO @ Sat, 03 Apr 2021 10:38:31: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 10:38:31: #1 finished! INFO @ Sat, 03 Apr 2021 10:38:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:38:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:38:32: #2 number of paired peaks: 153 WARNING @ Sat, 03 Apr 2021 10:38:32: Fewer paired peaks (153) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 153 pairs to build model! INFO @ Sat, 03 Apr 2021 10:38:32: start model_add_line... INFO @ Sat, 03 Apr 2021 10:38:32: start X-correlation... INFO @ Sat, 03 Apr 2021 10:38:32: end of X-cor INFO @ Sat, 03 Apr 2021 10:38:32: #2 finished! INFO @ Sat, 03 Apr 2021 10:38:32: #2 predicted fragment length is 203 bps INFO @ Sat, 03 Apr 2021 10:38:32: #2 alternative fragment length(s) may be 203 bps INFO @ Sat, 03 Apr 2021 10:38:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.05_model.r WARNING @ Sat, 03 Apr 2021 10:38:32: #2 Since the d (203) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:38:32: #2 You may need to consider one of the other alternative d(s): 203 WARNING @ Sat, 03 Apr 2021 10:38:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:38:32: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:38:32: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:38:36: 58000000 INFO @ Sat, 03 Apr 2021 10:38:47: 59000000 INFO @ Sat, 03 Apr 2021 10:38:58: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:38:59: 60000000 INFO @ Sat, 03 Apr 2021 10:39:05: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:39:08: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 10:39:08: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 10:39:08: #1 total tags in treatment: 21153027 INFO @ Sat, 03 Apr 2021 10:39:08: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 10:39:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 10:39:08: #1 tags after filtering in treatment: 16216891 INFO @ Sat, 03 Apr 2021 10:39:08: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 10:39:08: #1 finished! INFO @ Sat, 03 Apr 2021 10:39:08: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 10:39:08: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 10:39:10: #2 number of paired peaks: 153 WARNING @ Sat, 03 Apr 2021 10:39:10: Fewer paired peaks (153) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 153 pairs to build model! INFO @ Sat, 03 Apr 2021 10:39:10: start model_add_line... INFO @ Sat, 03 Apr 2021 10:39:10: start X-correlation... INFO @ Sat, 03 Apr 2021 10:39:10: end of X-cor INFO @ Sat, 03 Apr 2021 10:39:10: #2 finished! INFO @ Sat, 03 Apr 2021 10:39:10: #2 predicted fragment length is 203 bps INFO @ Sat, 03 Apr 2021 10:39:10: #2 alternative fragment length(s) may be 203 bps INFO @ Sat, 03 Apr 2021 10:39:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.10_model.r WARNING @ Sat, 03 Apr 2021 10:39:10: #2 Since the d (203) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 10:39:10: #2 You may need to consider one of the other alternative d(s): 203 WARNING @ Sat, 03 Apr 2021 10:39:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 10:39:10: #3 Call peaks... INFO @ Sat, 03 Apr 2021 10:39:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 10:39:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.20_peaks.xls INFO @ Sat, 03 Apr 2021 10:39:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:39:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.20_summits.bed INFO @ Sat, 03 Apr 2021 10:39:15: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (455 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:39:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.05_peaks.xls INFO @ Sat, 03 Apr 2021 10:39:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:39:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.05_summits.bed INFO @ Sat, 03 Apr 2021 10:39:22: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (6510 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 10:39:42: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 10:39:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.10_peaks.xls INFO @ Sat, 03 Apr 2021 10:39:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 10:39:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817537/SRX6817537.10_summits.bed INFO @ Sat, 03 Apr 2021 10:39:59: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2508 records, 4 fields): 5 millis CompletedMACS2peakCalling