Job ID = 4178625 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 26,205,548 reads read : 26,205,548 reads written : 26,205,548 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:08:39 26205548 reads; of these: 26205548 (100.00%) were unpaired; of these: 2796939 (10.67%) aligned 0 times 15948737 (60.86%) aligned exactly 1 time 7459872 (28.47%) aligned >1 times 89.33% overall alignment rate Time searching: 00:08:40 Overall time: 00:08:40 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 12 files... [bam_rmdupse_core] 6273338 / 23408609 = 0.2680 in library ' ' BAM に変換しました。 Bed ファイルを作成中... INFO @ Thu, 05 Dec 2019 13:46:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 05 Dec 2019 13:46:58: #1 read tag files... INFO @ Thu, 05 Dec 2019 13:46:58: #1 read treatment tags... INFO @ Thu, 05 Dec 2019 13:47:04: 1000000 INFO @ Thu, 05 Dec 2019 13:47:09: 2000000 INFO @ Thu, 05 Dec 2019 13:47:15: 3000000 INFO @ Thu, 05 Dec 2019 13:47:20: 4000000 INFO @ Thu, 05 Dec 2019 13:47:25: 5000000 INFO @ Thu, 05 Dec 2019 13:47:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 05 Dec 2019 13:47:27: #1 read tag files... INFO @ Thu, 05 Dec 2019 13:47:27: #1 read treatment tags... INFO @ Thu, 05 Dec 2019 13:47:32: 6000000 INFO @ Thu, 05 Dec 2019 13:47:32: 1000000 INFO @ Thu, 05 Dec 2019 13:47:38: 7000000 INFO @ Thu, 05 Dec 2019 13:47:38: 2000000 INFO @ Thu, 05 Dec 2019 13:47:43: 8000000 INFO @ Thu, 05 Dec 2019 13:47:44: 3000000 INFO @ Thu, 05 Dec 2019 13:47:49: 9000000 INFO @ Thu, 05 Dec 2019 13:47:50: 4000000 BedGraph に変換中... INFO @ Thu, 05 Dec 2019 13:47:56: 10000000 INFO @ Thu, 05 Dec 2019 13:47:56: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 05 Dec 2019 13:47:56: #1 read tag files... INFO @ Thu, 05 Dec 2019 13:47:56: #1 read treatment tags... INFO @ Thu, 05 Dec 2019 13:47:56: 5000000 INFO @ Thu, 05 Dec 2019 13:48:01: 1000000 INFO @ Thu, 05 Dec 2019 13:48:02: 11000000 INFO @ Thu, 05 Dec 2019 13:48:02: 6000000 INFO @ Thu, 05 Dec 2019 13:48:07: 2000000 INFO @ Thu, 05 Dec 2019 13:48:08: 12000000 INFO @ Thu, 05 Dec 2019 13:48:08: 7000000 INFO @ Thu, 05 Dec 2019 13:48:12: 3000000 INFO @ Thu, 05 Dec 2019 13:48:14: 13000000 INFO @ Thu, 05 Dec 2019 13:48:14: 8000000 INFO @ Thu, 05 Dec 2019 13:48:19: 4000000 INFO @ Thu, 05 Dec 2019 13:48:20: 14000000 INFO @ Thu, 05 Dec 2019 13:48:20: 9000000 INFO @ Thu, 05 Dec 2019 13:48:25: 5000000 INFO @ Thu, 05 Dec 2019 13:48:26: 10000000 INFO @ Thu, 05 Dec 2019 13:48:26: 15000000 INFO @ Thu, 05 Dec 2019 13:48:30: 6000000 INFO @ Thu, 05 Dec 2019 13:48:32: 11000000 INFO @ Thu, 05 Dec 2019 13:48:32: 16000000 INFO @ Thu, 05 Dec 2019 13:48:36: 7000000 INFO @ Thu, 05 Dec 2019 13:48:38: 12000000 INFO @ Thu, 05 Dec 2019 13:48:38: 17000000 INFO @ Thu, 05 Dec 2019 13:48:39: #1 tag size is determined as 51 bps INFO @ Thu, 05 Dec 2019 13:48:39: #1 tag size = 51 INFO @ Thu, 05 Dec 2019 13:48:39: #1 total tags in treatment: 17135271 INFO @ Thu, 05 Dec 2019 13:48:39: #1 user defined the maximum tags... INFO @ Thu, 05 Dec 2019 13:48:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 05 Dec 2019 13:48:39: #1 tags after filtering in treatment: 17135271 INFO @ Thu, 05 Dec 2019 13:48:39: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 05 Dec 2019 13:48:39: #1 finished! INFO @ Thu, 05 Dec 2019 13:48:39: #2 Build Peak Model... INFO @ Thu, 05 Dec 2019 13:48:39: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 05 Dec 2019 13:48:41: #2 number of paired peaks: 7 WARNING @ Thu, 05 Dec 2019 13:48:41: Too few paired peaks (7) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 05 Dec 2019 13:48:41: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Thu, 05 Dec 2019 13:48:42: 8000000 INFO @ Thu, 05 Dec 2019 13:48:44: 13000000 INFO @ Thu, 05 Dec 2019 13:48:47: 9000000 INFO @ Thu, 05 Dec 2019 13:48:49: 14000000 INFO @ Thu, 05 Dec 2019 13:48:53: 10000000 INFO @ Thu, 05 Dec 2019 13:48:55: 15000000 INFO @ Thu, 05 Dec 2019 13:48:58: 11000000 INFO @ Thu, 05 Dec 2019 13:49:01: 16000000 INFO @ Thu, 05 Dec 2019 13:49:03: 12000000 INFO @ Thu, 05 Dec 2019 13:49:06: 17000000 INFO @ Thu, 05 Dec 2019 13:49:07: #1 tag size is determined as 51 bps INFO @ Thu, 05 Dec 2019 13:49:07: #1 tag size = 51 INFO @ Thu, 05 Dec 2019 13:49:07: #1 total tags in treatment: 17135271 INFO @ Thu, 05 Dec 2019 13:49:07: #1 user defined the maximum tags... INFO @ Thu, 05 Dec 2019 13:49:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 05 Dec 2019 13:49:07: #1 tags after filtering in treatment: 17135271 INFO @ Thu, 05 Dec 2019 13:49:07: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 05 Dec 2019 13:49:07: #1 finished! INFO @ Thu, 05 Dec 2019 13:49:07: #2 Build Peak Model... INFO @ Thu, 05 Dec 2019 13:49:07: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 05 Dec 2019 13:49:08: 13000000 INFO @ Thu, 05 Dec 2019 13:49:09: #2 number of paired peaks: 7 WARNING @ Thu, 05 Dec 2019 13:49:09: Too few paired peaks (7) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 05 Dec 2019 13:49:09: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Thu, 05 Dec 2019 13:49:14: 14000000 INFO @ Thu, 05 Dec 2019 13:49:19: 15000000 INFO @ Thu, 05 Dec 2019 13:49:24: 16000000 INFO @ Thu, 05 Dec 2019 13:49:29: 17000000 INFO @ Thu, 05 Dec 2019 13:49:30: #1 tag size is determined as 51 bps INFO @ Thu, 05 Dec 2019 13:49:30: #1 tag size = 51 INFO @ Thu, 05 Dec 2019 13:49:30: #1 total tags in treatment: 17135271 INFO @ Thu, 05 Dec 2019 13:49:30: #1 user defined the maximum tags... INFO @ Thu, 05 Dec 2019 13:49:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 05 Dec 2019 13:49:30: #1 tags after filtering in treatment: 17135271 INFO @ Thu, 05 Dec 2019 13:49:30: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 05 Dec 2019 13:49:30: #1 finished! INFO @ Thu, 05 Dec 2019 13:49:30: #2 Build Peak Model... INFO @ Thu, 05 Dec 2019 13:49:30: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 05 Dec 2019 13:49:31: #2 number of paired peaks: 7 WARNING @ Thu, 05 Dec 2019 13:49:31: Too few paired peaks (7) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 05 Dec 2019 13:49:31: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX6468499/SRX6468499.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。